Conservation of cofitness between GFF4229 and GFF4253 in Hydrogenophaga sp. GW460-11-11-14-LB1

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF4229 Exopolyphosphatase (EC 3.6.1.11) 1.0 GFF4253 Recombination protein RecR 0.65 20
Acidovorax sp. GW101-3H11 0.62 Ac3H11_455 Exopolyphosphatase (EC 3.6.1.11) 0.62 Ac3H11_473 Recombination protein RecR low > 79
Variovorax sp. SCN45 0.60 GFF1091 Exopolyphosphatase (EC 3.6.1.11) 0.71 GFF1110 Recombination protein RecR low > 127
Variovorax sp. OAS795 0.59 ABID97_RS14590 Ppx/GppA phosphatase family protein 0.70 ABID97_RS14700 recombination mediator RecR low > 91
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS04855 exopolyphosphatase 0.58 QEN71_RS22285 recombination mediator RecR low > 153
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_04419 Ppx/GppA phosphatase 0.59 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Dechlorosoma suillum PS 0.34 Dsui_2813 exopolyphosphatase 0.57 Dsui_1811 recombination protein RecR low > 51
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS14105 exopolyphosphatase 0.58 BPHYT_RS09070 recombination protein RecR low > 109
Ralstonia solanacearum PSI07 0.33 RPSI07_RS15335 exopolyphosphatase 0.59 RPSI07_RS18205 recombination protein RecR low > 81
Ralstonia solanacearum GMI1000 0.33 RS_RS07710 exopolyphosphatase 0.59 RS_RS05980 recombination protein RecR low > 80
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS02110 exopolyphosphatase 0.60 RALBFv3_RS15170 recombination protein RecR low > 76
Ralstonia solanacearum UW163 0.33 UW163_RS15420 exopolyphosphatase 0.60 UW163_RS12640 recombination protein RecR
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS13430 exopolyphosphatase 0.61 RR42_RS13270 recombination protein RecR low > 128
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS14060 exopolyphosphatase 0.62 ABZR87_RS10810 recombination mediator RecR low > 80
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0294 Exopolyphosphatase 0.46 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0294 Exopolyphosphatase 0.46 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas putida KT2440 0.32 PP_5216 exopolyphosphatase 0.47 PP_4267 Recombination protein RecR low > 96
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_875 Exopolyphosphatase (EC 3.6.1.11) 0.46 PfGW456L13_4074 Recombination protein RecR low > 87
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12900 exopolyphosphatase 0.47 AO356_02495 recombination protein RecR low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4454 Exopolyphosphatase (EC 3.6.1.11) 0.47 Pf6N2E2_2325 Recombination protein RecR low > 103
Pseudomonas simiae WCS417 0.32 PS417_27425 exopolyphosphatase 0.47 PS417_20800 recombination protein RecR low > 88
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS29090 exopolyphosphatase 0.46 PFLU_RS22415 recombination protein RecR 0.24 83
Pseudomonas fluorescens SBW25 0.32 PFLU_RS29090 exopolyphosphatase 0.46 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas sp. RS175 0.32 PFR28_04344 Exopolyphosphatase 0.47 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas stutzeri RCH2 0.32 Psest_3731 exopolyphosphatase 0.47 Psest_2545 recombination protein RecR low > 67
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS09440 exopolyphosphatase 0.61 HSERO_RS18355 recombinase RecR low > 78
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_2209 Exopolyphosphatase (EC 3.6.1.11) 0.47 Pf1N1B4_3864 Recombination protein RecR low > 87
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_08880 exopolyphosphatase 0.47 AO353_00675 recombination protein RecR low > 101
Pseudomonas sp. S08-1 0.31 OH686_11275 Exopolyphosphatase 0.47 OH686_02385 recombination protein RecR low > 80
Castellaniella sp019104865 MT123 0.30 ABCV34_RS15575 Ppx/GppA phosphatase family protein 0.53 ABCV34_RS15480 recombination mediator RecR low > 48
Enterobacter sp. TBS_079 0.30 MPMX20_03357 Exopolyphosphatase 0.50 MPMX20_01074 Recombination protein RecR low > 85
Enterobacter asburiae PDN3 0.30 EX28DRAFT_0165 exopolyphosphatase 0.50 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_03775 exopolyphosphatase 0.51 CSW01_05375 recombination protein RecR low > 62
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.4065.1 Exopolyphosphatase (EC 3.6.1.11) 0.49 Xcc-8004.4012.1 Recombination protein RecR low > 74
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS15015 Ppx/GppA family phosphatase 0.48 LRK54_RS01250 recombination mediator RecR low > 59
Rhodanobacter denitrificans MT42 0.29 LRK55_RS14730 Ppx/GppA phosphatase family protein 0.48 LRK55_RS01020 recombination mediator RecR low > 63
Klebsiella michiganensis M5al 0.29 BWI76_RS21000 exopolyphosphatase 0.49 BWI76_RS06830 recombination protein RecR low > 92
Erwinia tracheiphila SCR3 0.29 LU632_RS24270 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.49 LU632_RS18105 recR recombination mediator RecR low > 74
Lysobacter sp. OAE881 0.29 ABIE51_RS14235 exopolyphosphatase 0.49 ABIE51_RS14010 recombination mediator RecR low > 62
Pantoea sp. MT58 0.29 IAI47_18540 guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.50 IAI47_14465 recombination protein RecR low > 76
Rahnella sp. WP5 0.29 EX31_RS22675 exopolyphosphatase 0.50 EX31_RS22525 recombination protein RecR low > 89
Acinetobacter radioresistens SK82 0.29 MPMX26_00569 Exopolyphosphatase 0.48 MPMX26_01643 Recombination protein RecR low > 36
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS00705 Ppx/GppA phosphatase family protein 0.47 ABZR86_RS06235 recombination mediator RecR low > 74
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_03775 ppx exopolyphosphatase 0.48 OKGIIK_05655 recR recombination mediator RecR low > 52
Dickeya dianthicola ME23 0.29 DZA65_RS16050 exopolyphosphatase 0.50 DZA65_RS06165 recombination protein RecR low > 75
Dickeya dianthicola 67-19 0.29 HGI48_RS15230 exopolyphosphatase 0.50 HGI48_RS05840 recombination protein RecR
Serratia liquefaciens MT49 0.29 IAI46_00570 exopolyphosphatase 0.50 IAI46_05240 recombination protein RecR low > 86
Dickeya dadantii 3937 0.29 DDA3937_RS15155 exopolyphosphatase 0.51 DDA3937_RS05790 recombination protein RecR low > 74
Pectobacterium carotovorum WPP14 0.28 HER17_RS06420 exopolyphosphatase 0.50 HER17_RS15695 recombination mediator RecR low > 75
Escherichia coli ECRC100 0.28 OKFHMN_14605 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 OKFHMN_08155 recR recombination mediator RecR low > 80
Escherichia coli ECRC101 0.28 MCAODC_05110 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 MCAODC_27380 recR recombination mediator RecR low > 87
Escherichia coli ECRC99 0.28 KEDOAH_13545 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 KEDOAH_19810 recR recombination mediator RecR
Escherichia coli BW25113 0.28 b3779 gpp guanosine pentaphosphatase/exopolyphosphatase (NCBI) 0.51 b0472 recR recombination protein RecR (NCBI) low > 76
Escherichia coli ECRC98 0.28 JDDGAC_18225 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 JDDGAC_11805 recR recombination mediator RecR low > 86
Escherichia coli ECRC102 0.28 NIAGMN_12360 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 NIAGMN_06210 recR recombination mediator RecR
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_04275 'Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase' transl_table=11 0.51 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli ECOR27 0.28 NOLOHH_06740 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 NOLOHH_01085 recR recombination mediator RecR low > 75
Alteromonas macleodii MIT1002 0.28 MIT1002_00871 Exopolyphosphatase 0.49 MIT1002_02649 Recombination protein RecR low > 70
Escherichia coli ECRC62 0.28 BNILDI_04785 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli BL21 0.28 ECD_03657 guanosine pentaphosphatase/exopolyphosphatase 0.51 ECD_00423 gap repair protein low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF2166 Exopolyphosphatase (EC 3.6.1.11) 0.50 GFF4390 Recombination protein RecR low > 78
Escherichia coli ECOR38 0.28 HEPCGN_13315 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 HEPCGN_06770 recR recombination mediator RecR low > 87
Escherichia coli Nissle 1917 0.28 ECOLIN_RS21695 guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.51 ECOLIN_RS02805 recombination mediator RecR
Escherichia fergusonii Becca 0.28 EFB2_04859 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 0.51 EFB2_03586 Recombination protein RecR low > 86
Shewanella oneidensis MR-1 0.27 SO2185 ppx exopolyphosphatase (NCBI ptt file) 0.44 SO2015 recR recombination protein RecR (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.27 Shewana3_2418 Ppx/GppA phosphatase (RefSeq) 0.44 Shewana3_2444 recR recombination protein RecR (RefSeq) low > 73
Shewanella amazonensis SB2B 0.26 Sama_2012 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) 0.44 Sama_1312 recR recombination protein RecR (RefSeq) low > 62
Marinobacter adhaerens HP15 0.26 HP15_228 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 0.49 HP15_1883 recombination protein RecR
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_2313 Exopolyphosphatase 0.48 B158DRAFT_2480 DNA replication and repair protein RecR low > 40
Shewanella loihica PV-4 0.24 Shew_3078 Ppx/GppA phosphatase (RefSeq) 0.45 Shew_2233 recombination protein RecR (RefSeq) low > 60
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_0477 Exopolyphosphatase 0.37 Echvi_1987 recombination protein RecR low > 79

Not shown: 0 genomes with orthologs for GFF4229 only; 30 genomes with orthologs for GFF4253 only