| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2221 | | pseudouridine synthase, RluA family | 1.0 | HP15_3904 | | binding-protein-dependent transport systems inner membrane component | 0.34 | 19 |
| Pantoea sp. MT58 | 0.48 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | IAI47_20550 | | ABC transporter permease | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.34 | LU632_RS19825 | | methionine ABC transporter permease MetI | low | > 74 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | 0.47 | EX28DRAFT_1675 | | ABC-type metal ion transport system, permease component | low | > 76 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | 0.48 | MPMX20_01956 | | Methionine import system permease protein MetP | low | > 85 |
| Escherichia coli ECRC102 | 0.46 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.37 | NIAGMN_07905 | metI | D-methionine transport system permease protein MetI | — | — |
| Escherichia coli ECRC99 | 0.46 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.37 | KEDOAH_18100 | metI | D-methionine transport system permease protein MetI | — | — |
| Escherichia coli ECRC101 | 0.46 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.37 | OKFHMN_10055 | metI | D-methionine transport system permease protein MetI | — | — |
| Escherichia coli ECRC101 | 0.46 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.37 | MCAODC_00570 | metI | D-methionine transport system permease protein MetI | — | — |
| Escherichia coli ECRC98 | 0.46 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.37 | JDDGAC_13650 | metI | D-methionine transport system permease protein MetI | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.46 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.38 | OHPLBJKB_03463 | | D-methionine transport system permease protein MetI | low | > 73 |
| Escherichia coli ECOR38 | 0.46 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.38 | HEPCGN_07995 | metI | D-methionine transport system permease protein MetI | low | > 85 |
| Escherichia coli BL21 | 0.46 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.38 | ECD_00197 | | DL-methionine transporter subunit | low | > 60 |
| Escherichia coli ECOR27 | 0.46 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.38 | NOLOHH_02400 | metI | D-methionine transport system permease protein MetI | low | > 57 |
| Escherichia fergusonii Becca | 0.46 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.38 | EFB2_03845 | | D-methionine transport system permease protein MetI | low | > 86 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.38 | ECOLIN_RS01090 | | methionine ABC transporter permease MetI | low | > 52 |
| Escherichia coli BW25113 | 0.46 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.38 | b0198 | metI | DL-methionine transporter subunit (NCBI) | low | > 76 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.59 | BWI76_RS16665 | | ABC transporter permease | low | > 92 |
| Escherichia coli ECRC62 | 0.46 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.38 | BNILDI_09270 | metI | D-methionine transport system permease protein MetI | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.38 | GFF22 | | Methionine ABC transporter permease protein | low | > 78 |
| Pseudomonas putida KT2440 | 0.46 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 0.58 | PP_0113 | | methionine ABC transporter, permease protein | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.59 | AO356_11515 | | metal ABC transporter permease | 0.32 | 35 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.59 | Pf6N2E2_4173 | | Methionine ABC transporter permease protein | low | > 103 |
| Rahnella sp. WP5 | 0.46 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.38 | EX31_RS15585 | | ABC transporter permease | low | > 89 |
| Pseudomonas sp. RS175 | 0.45 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.58 | PFR28_04613 | | Methionine import system permease protein MetP | low | > 88 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.61 | OH686_12265 | | Methionine ABC transporter permease protein | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.60 | PFLU_RS00345 | | ABC transporter permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.60 | PFLU_RS00345 | | ABC transporter permease | low | > 109 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.60 | PS417_00355 | | metal ABC transporter permease | low | > 88 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.40 | CSW01_04640 | | methionine ABC transporter permease | low | > 62 |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.59 | AO353_10885 | | metal ABC transporter permease | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.62 | Psyr_0282 | | Binding-protein-dependent transport systems inner membrane component | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.62 | Psyr_0282 | | Binding-protein-dependent transport systems inner membrane component | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.44 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.37 | HER17_RS04375 | | methionine ABC transporter permease MetI | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_1680 | | pseudouridine synthase, RluA family | 0.62 | Psest_4315 | | ABC-type metal ion transport system, permease component | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.59 | PfGW456L13_603 | | Methionine ABC transporter permease protein | low | > 87 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.48 | IAI46_07080 | | ABC transporter permease | low | > 86 |
| Dickeya dianthicola 67-19 | 0.44 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.41 | HGI48_RS07735 | | ABC transporter permease subunit | low | > 71 |
| Pseudomonas fluorescens FW300-N1B4 | 0.44 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.59 | Pf1N1B4_1865 | | Methionine ABC transporter permease protein | — | — |
| Dickeya dianthicola ME23 | 0.44 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.41 | DZA65_RS08330 | | ABC transporter permease subunit | low | > 75 |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | DDA3937_RS07980 | | ABC transporter permease subunit | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.58 | HSERO_RS07845 | | metal ABC transporter permease | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.45 | GFF5038 | | Methionine ABC transporter permease protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.46 | ABZR87_RS09535 | | methionine ABC transporter permease | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS14155 | | pseudouridine synthase | 0.44 | RR42_RS04560 | | methionine ABC transporter permease | low | > 128 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS08250 | | RluA family pseudouridine synthase | 0.36 | ABID97_RS21740 | | methionine ABC transporter permease | low | > 91 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.44 | RPSI07_RS19625 | | ABC transporter permease | low | > 81 |
| Ralstonia solanacearum UW163 | 0.40 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.45 | UW163_RS15965 | | ABC transporter permease | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.40 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.45 | RALBFv3_RS13845 | | ABC transporter permease | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.42 | Ac3H11_632 | | Methionine ABC transporter permease protein | low | > 79 |
| Variovorax sp. SCN45 | 0.39 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.36 | GFF3113 | | Methionine ABC transporter permease protein | low | > 127 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.47 | QEN71_RS04165 | | methionine ABC transporter permease | low | > 153 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS05155 | | RluA family pseudouridine synthase | 0.45 | RS_RS04580 | | ABC transporter permease | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.53 | Xcc-8004.4602.1 | | Methionine ABC transporter permease protein | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.44 | ABIE53_003138 | | D-methionine transport system permease protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.43 | H281DRAFT_03905 | | D-methionine transport system permease protein | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS08415 | | RluA family pseudouridine synthase | 0.53 | ABCV34_RS09540 | | methionine ABC transporter permease | low | > 48 |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.47 | BPHYT_RS14815 | | methionine ABC transporter permease | low | > 109 |
| Dechlorosoma suillum PS | 0.38 | Dsui_2437 | | pseudouridine synthase, RluA family | 0.35 | Dsui_2067 | | ABC-type metal ion transport system, permease component | low | > 51 |
| Rhodanobacter denitrificans FW104-10B01 | 0.37 | LRK54_RS17895 | | RluA family pseudouridine synthase | 0.53 | LRK54_RS14730 | | ABC transporter permease | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS17750 | | RluA family pseudouridine synthase | 0.53 | LRK55_RS14445 | | methionine ABC transporter permease | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.37 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.58 | OKGIIK_03555 | metP | metal ABC transporter permease | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS02725 | | RluA family pseudouridine synthase | 0.54 | ABZR86_RS00470 | | methionine ABC transporter permease | low | > 74 |
| Agrobacterium fabrum C58 | 0.23 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | 0.38 | Atu4488 | | ABC transporter permease | — | — |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS09915 | | RluA family pseudouridine synthase | 0.38 | ABIE40_RS15095 | | methionine ABC transporter permease | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.22 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | 0.38 | SMc03158 | | ABC transporter permease | 0.65 | 37 |
| Rhodospirillum rubrum S1H | 0.21 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | 0.43 | Rru_A0789 | | Binding-protein-dependent transport systems inner membrane component (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.20 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | 0.40 | MPMX19_05548 | | D-methionine transport system permease protein MetI | low | > 112 |
| Caulobacter crescentus NA1000 | 0.19 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | 0.55 | CCNA_02750 | | ABC transporter permease protein | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.19 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | 0.55 | CCNA_02750 | | ABC transporter permease protein | low | > 67 |
| Azospirillum brasilense Sp245 | 0.18 | AZOBR_RS06905 | | pseudouridine synthase | 0.37 | AZOBR_RS19470 | | DL-methionine transporter permease subunit | — | — |
Not shown: 11 genomes with orthologs for HP15_2221 only; 5 genomes with orthologs for HP15_3904 only