Conservation of cofitness between GFF2172 and GFF3907 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2172 Uracil permease 1.0 GFF3907 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.58 2
Klebsiella michiganensis M5al 0.95 BWI76_RS20940 uracil/xanthine transporter 0.96 BWI76_RS18950 imidazole glycerol phosphate synthase cyclase subunit low > 92
Enterobacter sp. TBS_079 0.95 MPMX20_03351 Uracil permease 0.95 MPMX20_03007 Imidazole glycerol phosphate synthase subunit HisF low > 85
Escherichia fergusonii Becca 0.95 EFB2_01401 Uracil permease 0.96 EFB2_01831 Imidazole glycerol phosphate synthase subunit HisF low > 86
Escherichia coli ECRC100 0.95 OKFHMN_21820 uraA uracil permease 0.96 OKFHMN_24490 hisF Imidazole glycerol phosphate synthase subunit HisF — —
Escherichia coli ECOR27 0.95 NOLOHH_13470 uraA uracil permease 0.95 NOLOHH_15805 hisF Imidazole glycerol phosphate synthase subunit HisF low > 75
Escherichia coli ECRC98 0.95 JDDGAC_25765 uraA uracil permease 0.96 JDDGAC_28600 hisF Imidazole glycerol phosphate synthase subunit HisF low > 86
Escherichia coli ECRC102 0.95 NIAGMN_19590 uraA uracil permease 0.96 NIAGMN_22435 hisF Imidazole glycerol phosphate synthase subunit HisF — —
Escherichia coli Nissle 1917 0.95 ECOLIN_RS14180 uracil permease 0.96 ECOLIN_RS11970 imidazole glycerol phosphate synthase subunit HisF low > 55
Escherichia coli BW25113 0.95 b2497 uraA uracil transporter (NCBI) 0.96 b2025 hisF imidazole glycerol phosphate synthase subunit HisF (NCBI) low > 76
Escherichia coli BL21 0.95 ECD_02389 uracil permease 0.95 ECD_01927 imidazole glycerol phosphate synthase, catalytic subunit with HisH — —
Escherichia coli ECRC101 0.95 MCAODC_12350 uraA uracil permease 0.96 MCAODC_20450 hisF Imidazole glycerol phosphate synthase subunit HisF low > 87
Escherichia coli ECRC99 0.95 KEDOAH_06400 uraA uracil permease 0.96 KEDOAH_03660 hisF Imidazole glycerol phosphate synthase subunit HisF — —
Escherichia coli ECRC62 0.95 BNILDI_12280 uraA uracil permease 0.96 BNILDI_14715 hisF Imidazole glycerol phosphate synthase subunit HisF low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_01229 Uracil permease 0.95 OHPLBJKB_01675 Imidazole glycerol phosphate synthase subunit HisF low > 73
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0171 uracil-xanthine permease 0.96 EX28DRAFT_0534 imidazoleglycerol phosphate synthase, cyclase subunit low > 76
Escherichia coli ECOR38 0.95 HEPCGN_20985 uraA uracil permease 0.95 HEPCGN_03195 hisF Imidazole glycerol phosphate synthase subunit HisF low > 87
Pantoea sp. MT58 0.90 IAI47_05190 uracil permease 0.90 IAI47_07065 imidazole glycerol phosphate synthase subunit HisF low > 76
Serratia liquefaciens MT49 0.89 IAI46_18875 uracil permease 0.93 IAI46_08185 imidazole glycerol phosphate synthase subunit HisF low > 86
Pectobacterium carotovorum WPP14 0.88 HER17_RS15455 uracil permease 0.89 HER17_RS12255 imidazole glycerol phosphate synthase subunit HisF low > 75
Dickeya dadantii 3937 0.87 DDA3937_RS06035 uracil permease 0.91 DDA3937_RS09710 imidazole glycerol phosphate synthase subunit HisF low > 74
Erwinia tracheiphila SCR3 0.87 LU632_RS08290 uraA uracil permease 0.90 LU632_RS08920 hisF imidazole glycerol phosphate synthase subunit HisF low > 74
Rahnella sp. WP5 0.86 EX31_RS22705 uracil permease 0.87 EX31_RS11465 imidazole glycerol phosphate synthase subunit HisF low > 89
Dickeya dianthicola ME23 0.85 DZA65_RS06430 uracil permease 0.90 DZA65_RS10030 imidazole glycerol phosphate synthase subunit HisF low > 75
Dickeya dianthicola 67-19 0.85 HGI48_RS06080 uracil permease 0.90 HGI48_RS09720 imidazole glycerol phosphate synthase subunit HisF — —
Desulfovibrio vulgaris Miyazaki F 0.60 DvMF_0910 uracil-xanthine permease (RefSeq) 0.37 DvMF_2304 imidazole glycerol phosphate synthase subunit HisF (RefSeq) low > 51
Azospirillum brasilense Sp245 0.36 AZOBR_RS31675 uracil transporter 0.40 AZOBR_RS01685 imidazole glycerol phosphate synthase low > 97
Pseudomonas putida KT2440 0.34 PP_0745 putative uracil permease 0.41 PP_0293 Imidazole glycerol phosphate synthase subunit HisF low > 96
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0968 Xanthine/uracil permease family 0.40 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0968 Xanthine/uracil permease family 0.40 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF — —
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2933 Uracil permease 0.39 Pf1N1B4_1623 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) — —
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_14850 uracil transporter 0.40 AO353_12090 imidazole glycerol phosphate synthase subunit HisF low > 101
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_1596 Uracil permease 0.39 PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) low > 87
Pseudomonas fluorescens SBW25 0.33 PFLU_RS04480 uracil-xanthine permease 0.39 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF low > 109
Pseudomonas simiae WCS417 0.33 PS417_04430 uracil transporter 0.39 PS417_01580 imidazole glycerol phosphate synthase low > 88
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS04480 uracil-xanthine permease 0.39 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF low > 109
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5234 Uracil permease 0.40 Pf6N2E2_3838 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) — —
Marinobacter adhaerens HP15 0.33 HP15_2307 xanthine/uracil permease 0.39 HP15_3009 protein containing histidine biosynthesis, HisF domain — —
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_16560 uracil transporter 0.40 AO356_09795 imidazole glycerol phosphate synthase subunit HisF low > 104
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS08125 uracil-xanthine permease family protein 0.43 HMPREF1078_RS13565 imidazole glycerol phosphate synthase subunit HisF low > 61
Dechlorosoma suillum PS 0.32 Dsui_2332 uracil-xanthine permease 0.38 Dsui_1418 imidazoleglycerol phosphate synthase, cyclase subunit — —
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_10810 uracil permease 0.86 CSW01_05775 imidazole glycerol phosphate synthase cyclase subunit low > 62
Pseudomonas stutzeri RCH2 0.32 Psest_1119 uracil-xanthine permease 0.41 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit — —
Variovorax sp. SCN45 0.32 GFF3368 Pyrimidine permease 0.39 GFF5357 Imidazole glycerol phosphate synthase cyclase subunit — —
Variovorax sp. OAS795 0.32 ABID97_RS03010 solute carrier family 23 protein 0.41 ABID97_RS23105 imidazole glycerol phosphate synthase subunit HisF — —
Pseudomonas sp. S08-1 0.31 OH686_17980 Uracil permease or Uracil:proton symporter UraA 0.42 OH686_14595 Imidazole glycerol phosphate synthase cyclase subunit low > 80
Pseudomonas sp. RS175 0.31 PFR28_03642 Uracil permease 0.39 PFR28_04933 Imidazole glycerol phosphate synthase subunit HisF low > 88
Agrobacterium fabrum C58 0.31 Atu3076 uracil transport protein 0.36 Atu0039 imidazoleglycerol-phosphate synthase cyclase low > 89
Shewanella amazonensis SB2B 0.31 Sama_1918 uracil-xanthine permease (RefSeq) 0.75 Sama_1947 imidazole glycerol phosphate synthase subunit HisF (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF2000 Uracil permease 0.39 GFF1309 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) — —
Bacteroides ovatus ATCC 8483 0.31 BACOVA_02389 putative permease 0.44 BACOVA_00219 imidazoleglycerol phosphate synthase, cyclase subunit low > 94
Desulfovibrio vulgaris Hildenborough JW710 0.31 DVU1026 uraA uracil permease (TIGR) 0.38 DVU0286 hisF imidazoleglycerol phosphate synthase, cyclase subunit (TIGR) low > 55
Bacteroides thetaiotaomicron VPI-5482 0.31 BT0686 putative uracil permease (uracil transporter) (NCBI ptt file) 0.45 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) 0.21 70
Shewanella oneidensis MR-1 0.30 SO2879 uraA uracil permease (NCBI ptt file) 0.74 SO2068 hisF hisF protein (cyclase) (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.30 Shewana3_1641 uracil-xanthine permease (RefSeq) 0.74 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.60 37
Shewanella loihica PV-4 0.30 Shew_1836 uracil-xanthine permease (RefSeq) 0.73 Shew_2203 imidazole glycerol phosphate synthase subunit HisF (RefSeq) low > 60
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_02126 uracil-xanthine permease 0.41 H281DRAFT_05659 imidazole glycerol phosphate synthase subunit hisF — —
Paraburkholderia graminis OAS925 0.30 ABIE53_000545 putative pyrimidine permease RutG 0.42 ABIE53_003695 cyclase — —
Acidovorax sp. GW101-3H11 0.30 Ac3H11_4891 Uracil permease 0.35 Ac3H11_4733 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) — —
Bosea sp. OAE506 0.30 ABIE41_RS13010 uracil-xanthine permease family protein 0.34 ABIE41_RS03810 imidazole glycerol phosphate synthase subunit HisF — —
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS00925 solute carrier family 23 protein 0.40 QEN71_RS27835 imidazole glycerol phosphate synthase subunit HisF low > 153
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS01995 pyrimidine permease 0.41 BPHYT_RS17680 imidazole glycerol phosphate synthase subunit HisF low > 109
Acinetobacter radioresistens SK82 0.30 MPMX26_01717 Putative pyrimidine permease RutG 0.39 MPMX26_02854 Imidazole glycerol phosphate synthase subunit HisF — —
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS18085 pyrimidine permease 0.38 HSERO_RS20315 imidazole glycerol phosphate synthase low > 78
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS04530 pyrimidine permease 0.42 RR42_RS18885 imidazole glycerol phosphate synthase — —
Bifidobacterium breve UCC2003 0.27 BBR_RS14875 uracil-xanthine permease 0.39 BBR_RS16095 imidazole glycerol phosphate synthase subunit HisF low > 34
Azospirillum sp. SherDot2 0.27 MPMX19_02961 Putative pyrimidine permease RutG 0.40 MPMX19_02542 Imidazole glycerol phosphate synthase subunit HisF — —
Castellaniella sp019104865 MT123 0.25 ABCV34_RS15535 solute carrier family 23 protein 0.37 ABCV34_RS11250 imidazole glycerol phosphate synthase subunit HisF 0.25 25
Methanococcus maripaludis JJ 0.19 MMJJ_RS01485 uracil-xanthine permease family protein 0.38 MMJJ_RS05490 imidazole glycerol phosphate synthase subunit HisF low > 28

Not shown: 1 genomes with orthologs for GFF2172 only; 33 genomes with orthologs for GFF3907 only