| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF4694 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | 1.0 | GFF3890 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.44 | 6 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.94 | OHPLBJKB_01034 | | Nicotinamide-nucleotide amidohydrolase PncC | 0.66 | OHPLBJKB_01663 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 73 |
| Escherichia coli BL21 | 0.94 | ECD_02550 | | nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase | 0.60 | ECD_01944 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) | — | — |
| Escherichia coli BW25113 | 0.94 | b2700 | ygaD | competence damage-inducible protein A (NCBI) | 0.65 | b2038 | rfbC | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.94 | HEPCGN_19895 | pncC | nicotinamide-nucleotide amidase | 0.60 | HEPCGN_03120 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia fergusonii Becca | 0.94 | EFB2_01224 | | Nicotinamide-nucleotide amidohydrolase PncC | 0.64 | EFB2_01816 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2786 | | amidohydrolase, PncC family | 0.53 | EX28DRAFT_0520 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS22185 | | hypothetical protein | 0.58 | BWI76_RS19055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS15740 | pncC | nicotinamide-nucleotide amidase | 0.62 | LU632_RS08865 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 74 |
| Rahnella sp. WP5 | 0.63 | EX31_RS07805 | | nicotinamide-nucleotide amidase | 0.55 | EX31_RS11510 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 89 |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS16360 | | nicotinamide-nucleotide amidase | 0.55 | HGI48_RS06765 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 71 |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS17455 | | nicotinamide-nucleotide amidase | 0.55 | DZA65_RS07120 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 75 |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS16250 | | nicotinamide-nucleotide amidase | 0.54 | DDA3937_RS06745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 74 |
| Marinobacter adhaerens HP15 | 0.51 | HP15_1046 | | competence damage-inducible protein A | 0.51 | HP15_p187g51 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 73 |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS07790 | | CinA family protein | 0.53 | ABIE51_RS15610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF3091 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | 0.62 | GFF1840 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.3118.1 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | 0.51 | Xcc-8004.4484.1 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.47 | QEN71_RS27055 | | CinA family protein | 0.60 | QEN71_RS25745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS17625 | | damage-inducible protein CinA | 0.55 | RR42_RS15830 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS07710 | | CinA family protein | 0.67 | UW163_RS00905 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS05915 | | CinA family protein | 0.67 | RALBFv3_RS12660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS11330 | | CinA family protein | 0.67 | RPSI07_RS20600 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS01580 | | CinA family protein | 0.57 | ABZR87_RS08660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS13860 | | CinA family protein | 0.67 | RS_RS03445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_1377 | | CinA, C-terminal | 0.65 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_1377 | | CinA, C-terminal | 0.65 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Burkholderia phytofirmans PsJN | 0.45 | BPHYT_RS16895 | | competence damage-inducible protein A | 0.59 | BPHYT_RS04275 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Variovorax sp. SCN45 | 0.45 | GFF6273 | | Nicotinamide-nucleotide amidase (EC 3.5.1.42) | 0.62 | GFF6879 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pseudomonas sp. S08-1 | 0.45 | OH686_18200 | | Nicotinamide-nucleotide amidase | 0.62 | OH686_14370 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_00954 | | Nicotinamide-nucleotide amidohydrolase PncC | 0.57 | MIT1002_03559 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas simiae WCS417 | 0.44 | PS417_05810 | | damage-inducible protein CinA | 0.68 | PS417_01320 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_2873 | | competence/damage-inducible protein CinA C-terminal domain | 0.68 | Psest_4264 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS00655 | | CinA family protein | 0.55 | ABZR86_RS18725 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_03735 | pncC | damage-inducible protein CinA | 0.54 | OKGIIK_01165 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 52 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_06305 | | nicotinamide-nucleotide amidase | 0.60 | H281DRAFT_04824 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS14975 | | CinA family protein | 0.53 | LRK54_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS05880 | | CinA family protein | 0.62 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas putida KT2440 | 0.44 | PP_1628 | | NMN amidohydrolase | 0.63 | PP_1782 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_16800 | | damage-inducible protein CinA | 0.66 | AO353_11875 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dechlorosoma suillum PS | 0.44 | Dsui_0710 | | competence/damage-inducible protein CinA-like protein | 0.61 | Dsui_1951 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS14690 | | CinA family protein | 0.53 | LRK55_RS05430 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS05880 | | CinA family protein | 0.62 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_738 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | 0.59 | Ac3H11_1883 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_05675 | | damage-inducible protein CinA | 0.62 | AO356_10050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_003546 | | nicotinamide-nucleotide amidase | 0.59 | ABIE53_001139 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.43 | HMPREF1078_RS09765 | | CinA family protein | 0.49 | HMPREF1078_RS00700 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_3142 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | 0.65 | Pf1N1B4_1664 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | low | > 87 |
| Magnetospirillum magneticum AMB-1 | 0.43 | AMB_RS12830 | | CinA family protein | 0.41 | AMB_RS00250 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas sp. RS175 | 0.43 | PFR28_00471 | | Nicotinamide-nucleotide amidohydrolase PncC | 0.60 | PFR28_04892 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_2994 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | 0.61 | Pf6N2E2_3880 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Azospirillum brasilense Sp245 | 0.43 | AZOBR_RS14405 | | competence damage-inducible protein A | 0.41 | AZOBR_RS33410 | | dTDP-4-dehydrorhamnose 3 5-epimerase | low | > 97 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_4669 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | 0.65 | PfGW456L13_399 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS10110 | | CinA family protein | 0.47 | ABCV34_RS02485 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS16840 | | competence damage-inducible protein A | 0.50 | HSERO_RS22055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS16315 | | CinA family protein | 0.50 | HMPREF1181_RS14380 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS09070 | | CinA family protein | 0.43 | ABIE40_RS08675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 107 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.41 | DVU1033 | cinA | competence/damage-inducible protein CinA protein, truncation (TIGR) | 0.43 | DVU0698 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) | low | > 55 |
| Caulobacter crescentus NA1000 | 0.40 | CCNA_01811 | | competence/damage-inducible protein CinA | 0.55 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.40 | CCNA_01811 | | competence/damage-inducible protein CinA | 0.55 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 67 |
| Sinorhizobium meliloti 1021 | 0.40 | SMc01039 | | hypothetical protein | 0.44 | SM_b21325 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 103 |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_01107 | | Nicotinamide-nucleotide amidohydrolase PncC | 0.46 | MPMX19_06724 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Agrobacterium fabrum C58 | 0.39 | Atu1442 | | competence/damage-inducible protein CinA | 0.42 | Atu4618 | | dTDP-rhamnose-3,5-epimerase | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c14740 | | competence/damage-inducible protein CinA C-terminal domain | 0.49 | PGA1_65p00250 | | dTDP-4-dehydrorhamnose 3,5-epimerase RfbC | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.39 | HMPREF1058_RS04115 | | CinA family protein | 0.50 | HMPREF1058_RS06635 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.38 | ABI39_RS17105 | | CinA family protein | 0.51 | ABI39_RS13380 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 72 |
| Bosea sp. OAE506 | 0.35 | ABIE41_RS16805 | | CinA family protein | 0.42 | ABIE41_RS02855 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 77 |
Not shown: 17 genomes with orthologs for GFF4694 only; 19 genomes with orthologs for GFF3890 only