| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3338 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 1.0 | Psest_3932 | | nitrogen regulation protein NR(I) | 0.35 | 3 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_5048 | | Dna binding response regulator PrrA (RegA) | 0.87 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.88 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.88 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | — | — |
| Pseudomonas sp. RS175 | 0.86 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.87 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | — | — |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS04140 | | response regulator transcription factor | 0.88 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | low | > 109 |
| Pseudomonas simiae WCS417 | 0.86 | PS417_04100 | | chemotaxis protein CheY | 0.88 | PS417_01635 | | nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS04140 | | response regulator transcription factor | 0.88 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | 0.87 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_05335 | | chemotaxis protein CheY | 0.87 | AO353_12145 | | nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.85 | AO356_07205 | | chemotaxis protein CheY | 0.87 | AO356_09730 | | nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.85 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.87 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | — | — |
| Pseudomonas putida KT2440 | 0.84 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.88 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | low | > 96 |
| Pseudomonas sp. S08-1 | 0.84 | OH686_08680 | | Dna binding response regulator PrrA (RegA) | 0.88 | OH686_10640 | | nitrogen regulation protein NR(I) | low | > 80 |
| Dechlorosoma suillum PS | 0.59 | Dsui_1180 | | response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein | 0.58 | Dsui_1051 | | nitrogen regulation protein NR(I) | low | > 51 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS10115 | | response regulator transcription factor | 0.42 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_10900 | | two-component system response regulator | 0.43 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS03810 | | response regulator transcription factor | 0.45 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS04040 | | response regulator transcription factor | 0.45 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.50 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | 0.54 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | — | — |
| Paraburkholderia graminis OAS925 | 0.50 | ABIE53_000420 | | two-component system response regulator RegA | 0.54 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | — | — |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS01625 | | chemotaxis protein CheY | 0.54 | BPHYT_RS12935 | | chemotaxis protein CheY | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS00325 | | response regulator transcription factor | 0.54 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS13000 | | chemotaxis protein CheY | 0.58 | HSERO_RS15680 | | chemotaxis protein CheY | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS01085 | | chemotaxis protein CheY | 0.56 | RR42_RS12980 | | chemotaxis protein CheY | low | > 128 |
| Dinoroseobacter shibae DFL-12 | 0.47 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | 0.30 | Dshi_1572 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS05135 | | response regulator transcription factor | 0.56 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.46 | CCNA_01845 | | two-component response regulator protein | 0.33 | CCNA_03424 | | AAA-family response regulator tacA | low | > 67 |
| Caulobacter crescentus NA1000 | 0.46 | CCNA_01845 | | two-component response regulator protein | 0.33 | CCNA_03424 | | AAA-family response regulator tacA | low | > 66 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS00200 | | DNA-binding response regulator | 0.56 | RS_RS06320 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS03965 | | DNA-binding response regulator | 0.56 | UW163_RS13000 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.56 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS23750 | | DNA-binding response regulator | 0.56 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | low | > 81 |
| Marinobacter adhaerens HP15 | 0.45 | HP15_3981 | | two component transcriptional regulator, Fis family | 0.74 | HP15_425 | | two-component response regulator NtrC | low | > 73 |
| Rhizobium sp. OAE497 | 0.45 | ABIE40_RS19505 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.39 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.45 | SMc02584 | | transcriptional regulator | 0.40 | SMc01043 | | nitrogen assimilation regulatory protein | — | — |
| Agrobacterium fabrum C58 | 0.44 | Atu0050 | | two component response regulator | 0.39 | Atu1446 | | two component response regulator | low | > 89 |
| Shewanella amazonensis SB2B | 0.43 | Sama_3186 | | response regulator receiver protein (RefSeq) | 0.67 | Sama_3427 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Phaeobacter inhibens DSM 17395 | 0.43 | PGA1_c35390 | | photosynthetic apparatus regulatory protein RegA | 0.30 | PGA1_c14810 | | nitrogen assimilation regulatory protein NtrX | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | 0.47 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | low | > 74 |
| Rhodopseudomonas palustris CGA009 | 0.43 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.37 | TX73_013420 | | nitrogen regulation protein NR(I) | low | > 86 |
| Bosea sp. OAE506 | 0.42 | ABIE41_RS21050 | | response regulator transcription factor | 0.38 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | low | > 77 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS04475 | | response regulator transcription factor | 0.32 | A4249_RS09115 | | sigma-54 dependent transcriptional regulator | low | > 48 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_06181 | | Photosynthetic apparatus regulatory protein RegA | 0.40 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | — | — |
| Variovorax sp. SCN45 | 0.41 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.54 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | — | — |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS07610 | | response regulator transcription factor | 0.54 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | low | > 91 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3707 | | response regulator receiver protein (RefSeq) | 0.68 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.41 | SO4172 | | DNA-binding response regulator (NCBI ptt file) | 0.68 | SO4472 | ntrC | nitrogen regulation protein NR(I) (NCBI ptt file) | low | > 76 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS09795 | | response regulator transcription factor | 0.47 | ABIE51_RS01360 | | nitrogen regulation protein NR(I) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.40 | Ga0059261_1560 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.38 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | low | > 68 |
| Azospirillum brasilense Sp245 | 0.40 | AZOBR_RS23150 | | chemotaxis protein CheY | 0.40 | AZOBR_RS14430 | | chemotaxis protein CheY | low | > 97 |
| Shewanella loihica PV-4 | 0.40 | Shew_3342 | | two component Fis family transcriptional regulator (RefSeq) | 0.66 | Shew_3561 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | low | > 60 |
Not shown: 2 genomes with orthologs for Psest_3338 only; 40 genomes with orthologs for Psest_3932 only