Conservation of cofitness between PGA1_c33580 and PGA1_c36430 in Phaeobacter inhibens DSM 17395

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c33580 ribonuclease HII 1.0 PGA1_c36430 putative ribonuclease R 0.29 9
Dinoroseobacter shibae DFL-12 0.59 Dshi_0023 Ribonuclease H (RefSeq) 0.65 Dshi_0015 ribonuclease R (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_1962 RNase HII (EC 3.1.26.4) 0.38 Ga0059261_3266 ribonuclease R low > 68
Rhizobium sp. OAE497 0.47 ABIE40_RS05340 ribonuclease HII 0.45 ABIE40_RS07350 ribonuclease R low > 107
Rahnella sp. WP5 0.46 EX31_RS12965 ribonuclease HII 0.25 EX31_RS08785 ribonuclease R low > 89
Magnetospirillum magneticum AMB-1 0.45 AMB_RS20190 ribonuclease HII 0.43 AMB_RS04465 ribonuclease R low > 64
Dickeya dianthicola 67-19 0.45 HGI48_RS05185 ribonuclease HII 0.24 HGI48_RS17315 ribonuclease R — —
Pantoea sp. MT58 0.45 IAI47_15460 ribonuclease HII 0.23 IAI47_02625 ribonuclease R low > 76
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_00383 ribonuclease HII 0.42 CCNA_02537 ribonuclease R low > 67
Pseudomonas stutzeri RCH2 0.45 Psest_2828 Ribonuclease HII 0.22 Psest_0691 ribonuclease R — —
Dickeya dianthicola ME23 0.45 DZA65_RS05525 ribonuclease HII 0.24 DZA65_RS18405 ribonuclease R — —
Caulobacter crescentus NA1000 0.45 CCNA_00383 ribonuclease HII 0.42 CCNA_02537 ribonuclease R low > 66
Dechlorosoma suillum PS 0.44 Dsui_2680 ribonuclease HII 0.25 Dsui_3128 ribonuclease R low > 51
Dickeya dadantii 3937 0.44 DDA3937_RS05185 ribonuclease HII 0.24 DDA3937_RS17260 ribonuclease R low > 74
Pseudomonas sp. S08-1 0.44 OH686_06415 Ribonuclease HII 0.22 OH686_15910 ribonuclease R — —
Shewanella loihica PV-4 0.44 Shew_2621 ribonuclease H (RefSeq) 0.26 Shew_3289 ribonuclease R (RefSeq) low > 60
Serratia liquefaciens MT49 0.44 IAI46_20190 ribonuclease HII 0.25 IAI46_01660 ribonuclease R low > 86
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS06345 ribonuclease HII 0.22 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25 0.44 PFLU_RS06345 ribonuclease HII 0.22 PFLU_RS02625 ribonuclease R low > 109
Rhodospirillum rubrum S1H 0.44 Rru_A3209 Ribonuclease H (NCBI) 0.42 Rru_A3203 ribonuclease R (NCBI) — —
Sinorhizobium meliloti 1021 0.44 SMc00867 ribonuclease HII 0.44 SMc01365 exoribonuclease II protein — —
Pseudomonas simiae WCS417 0.44 PS417_06280 ribonuclease HII 0.22 PS417_02555 exoribonuclease R low > 88
Pectobacterium carotovorum WPP14 0.43 HER17_RS16265 ribonuclease HII 0.24 HER17_RS03835 ribonuclease R low > 75
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_16530 ribonuclease HII 0.22 AO353_13200 exoribonuclease R low > 101
Erwinia tracheiphila SCR3 0.43 LU632_RS19895 rnhB ribonuclease HII 0.24 LU632_RS21750 rnr ribonuclease R — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS09510 ribonuclease HII 0.43 A4249_RS08325 ribonuclease R low > 48
Pseudomonas putida KT2440 0.43 PP_1605 Ribonuclease HII 0.24 PP_4880 exoribonuclease R low > 96
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_4694 Ribonuclease HII (EC 3.1.26.4) 0.22 PfGW456L13_144 3'-to-5' exoribonuclease RNase R — —
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_3055 Ribonuclease HII (EC 3.1.26.4) 0.22 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Agrobacterium fabrum C58 0.42 Atu0720 ribonuclease HII 0.44 Atu1303 exoribonuclease low > 89
Escherichia coli ECOR38 0.42 HEPCGN_08095 rnhB ribonuclease HII 0.26 HEPCGN_10450 rnr ribonuclease R — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_05970 ribonuclease HII 0.22 AO356_08610 exoribonuclease R low > 104
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_03480 Ribonuclease HII 0.26 OHPLBJKB_03863 Ribonuclease R 0.68 34
Escherichia coli ECRC99 0.42 KEDOAH_18015 rnhB ribonuclease HII 0.26 KEDOAH_15935 rnr ribonuclease R — —
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS21650 ribonuclease HII 0.22 ABZR86_RS08270 ribonuclease R low > 74
Escherichia coli ECRC98 0.42 JDDGAC_13735 rnhB ribonuclease HII 0.26 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli ECRC102 0.42 NIAGMN_07990 rnhB ribonuclease HII 0.26 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli BL21 0.42 ECD_00181 ribonuclease HII 0.26 ECD_04046 exoribonuclease R, RNase R low > 60
Escherichia coli BW25113 0.42 b0183 rnhB ribonuclease HII (NCBI) 0.26 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli ECOR27 0.42 NOLOHH_02485 rnhB ribonuclease HII 0.26 NOLOHH_04485 rnr ribonuclease R — —
Escherichia coli ECRC62 0.42 BNILDI_09185 rnhB ribonuclease HII 0.26 BNILDI_07005 rnr ribonuclease R — —
Escherichia coli ECRC101 0.42 MCAODC_00655 rnhB ribonuclease HII 0.26 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli Nissle 1917 0.42 ECOLIN_RS00995 ribonuclease HII 0.26 ECOLIN_RS24265 ribonuclease R — —
Escherichia coli ECRC101 0.42 OKFHMN_10140 rnhB ribonuclease HII 0.26 OKFHMN_12220 rnr ribonuclease R — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_3098 Ribonuclease HII (EC 3.1.26.4) 0.22 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Escherichia fergusonii Becca 0.42 EFB2_03861 Ribonuclease HII 0.26 EFB2_04356 Ribonuclease R low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_1357 RNase HII 0.23 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_1357 RNase HII 0.23 Psyr_0579 RNAse R low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF39 Ribonuclease HII (EC 3.1.26.4) 0.26 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 low > 78
Pseudomonas sp. RS175 0.42 PFR28_00410 Ribonuclease HII 0.22 PFR28_05130 Ribonuclease R — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11895 ribonuclease HII 0.24 ABZR87_RS10985 ribonuclease R low > 80
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS11805 ribonuclease HII 0.24 RR42_RS13065 ribonuclease R low > 128
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3771 RNase HII (EC 3.1.26.4) 0.25 EX28DRAFT_3376 ribonuclease R low > 76
Enterobacter sp. TBS_079 0.41 MPMX20_00867 Ribonuclease HII 0.25 MPMX20_00460 Ribonuclease R low > 85
Azospirillum sp. SherDot2 0.41 MPMX19_05650 Ribonuclease HII 0.41 MPMX19_01812 Ribonuclease R low > 112
Ralstonia solanacearum GMI1000 0.41 RS_RS07115 ribonuclease HII 0.24 RS_RS06155 ribonuclease R — —
Alteromonas macleodii MIT1002 0.40 MIT1002_01017 Ribonuclease HII 0.23 MIT1002_03606 Ribonuclease R low > 70
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17030 ribonuclease HII 0.24 RPSI07_RS18030 ribonuclease R low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS00445 ribonuclease HII 0.24 RALBFv3_RS15345 ribonuclease R — —
Ralstonia solanacearum UW163 0.40 UW163_RS13775 ribonuclease HII 0.24 UW163_RS12810 ribonuclease R — —
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_11440 ribonuclease HII 0.25 CSW01_13155 ribonuclease R low > 62
Shewanella amazonensis SB2B 0.40 Sama_1153 rnhB ribonuclease HII (RefSeq) 0.25 Sama_3067 exoribonuclease II (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_10205 rnhB ribonuclease HII 0.22 OKGIIK_06755 rnr ribonuclease R low > 52
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS10945 ribonuclease HII 0.21 HSERO_RS09290 ribonuclease R low > 78
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS22230 ribonuclease HII 0.17 ABZR88_RS04270 ribonuclease R low > 71
Klebsiella michiganensis M5al 0.39 BWI76_RS05285 ribonuclease HII 0.26 BWI76_RS02575 exoribonuclease R — —
Azospirillum brasilense Sp245 0.39 AZOBR_RS20300 ribonuclease HII 0.45 AZOBR_RS16165 ribonuclease R low > 97
Acidovorax sp. GW101-3H11 0.38 Ac3H11_432 Ribonuclease HII (EC 3.1.26.4) 0.23 Ac3H11_412 3'-to-5' exoribonuclease RNase R low > 79
Shewanella sp. ANA-3 0.38 Shewana3_2801 rnhB ribonuclease HII (RefSeq) 0.26 Shewana3_0697 RNAse R (RefSeq) low > 73
Shewanella oneidensis MR-1 0.37 SO1643 rnhB ribonuclease HII (NCBI ptt file) 0.26 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Fusobacterium nucleatum SB010 0.36 HUW76_08570 ribonuclease HII 0.18 HUW76_06085 ribonuclease R low > 35
Bosea sp. OAE506 0.35 ABIE41_RS22855 ribonuclease HII 0.40 ABIE41_RS18140 ribonuclease R — —
Lysobacter sp. OAE881 0.33 ABIE51_RS06875 ribonuclease HII 0.24 ABIE51_RS07475 ribonuclease R low > 62

Not shown: 20 genomes with orthologs for PGA1_c33580 only; 8 genomes with orthologs for PGA1_c36430 only