Conservation of cofitness between GFF817 and GFF2715 in Hydrogenophaga sp. GW460-11-11-14-LB1

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 1.0 GFF2715 rRNA small subunit methyltransferase I 0.78 5
Variovorax sp. OAS795 0.53 ABID97_RS23860 RsmD family RNA methyltransferase 0.55 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.71 3
Variovorax sp. SCN45 0.51 GFF2320 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.55 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) low > 127
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.45 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 81
Ralstonia solanacearum UW163 0.44 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Ralstonia solanacearum GMI1000 0.44 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS02815 methyltransferase 0.41 BPHYT_RS01940 16S rRNA methyltransferase low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 103
Paraburkholderia graminis OAS925 0.39 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.37 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.31 28
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.89 4
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS01990 methyltransferase 0.47 RR42_RS19740 16S rRNA methyltransferase 0.47 4
Dechlorosoma suillum PS 0.35 Dsui_1027 RNA methyltransferase, RsmD family 0.39 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family low > 51
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS20695 methyltransferase 0.45 HSERO_RS23345 16S rRNA methyltransferase 0.48 1
Pectobacterium carotovorum WPP14 0.34 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.35 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.37 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.78 39
Pseudomonas sp. RS175 0.32 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.39 PFR28_03597 Ribosomal RNA small subunit methyltransferase I low > 88
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.38 AO356_17110 methyltransferase 0.53 3
Marinobacter adhaerens HP15 0.32 HP15_3491 conserved hypothetical protein 0.36 HP15_554 tetrapyrrole methylase family protein 0.63 1
Castellaniella sp019104865 MT123 0.32 ABCV34_RS10145 RsmD family RNA methyltransferase 0.39 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 48
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.38 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase low > 62
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.39 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.21 97
Escherichia coli ECRC99 0.32 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC98 0.32 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia fergusonii Becca 0.32 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.38 EFB2_00677 Ribosomal RNA small subunit methyltransferase I low > 86
Escherichia coli Nissle 1917 0.32 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.38 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Enterobacter sp. TBS_079 0.32 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.36 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.22 9
Escherichia coli ECRC101 0.32 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC102 0.32 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC101 0.32 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli BL21 0.32 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.37 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent low > 60
Escherichia coli ECOR27 0.32 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 57
Escherichia coli ECRC62 0.32 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli BW25113 0.32 b3465 yhhF predicted methyltransferase (NCBI) 0.37 b3146 yraL predicted methyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.32 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 85
Rhodanobacter denitrificans MT42 0.31 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.35 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.35 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.60 33
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.36 GFF1521 rRNA small subunit methyltransferase I low > 78
Dickeya dianthicola 67-19 0.31 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.35 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 71
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.36 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Shewanella amazonensis SB2B 0.31 Sama_3469 hypothetical protein (RefSeq) 0.34 Sama_3353 hypothetical protein (RefSeq) 0.46 3
Erwinia tracheiphila SCR3 0.31 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.37 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.38 PfGW456L13_1643 rRNA small subunit methyltransferase I low > 87
Klebsiella michiganensis M5al 0.31 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.35 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.17 92
Dickeya dianthicola ME23 0.30 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.34 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.34 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 52
Serratia liquefaciens MT49 0.30 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.34 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Rahnella sp. WP5 0.30 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.34 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.38 5
Pseudomonas fluorescens SBW25 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.41 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.41 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.26 30
Pseudomonas simiae WCS417 0.30 PS417_26825 16S rRNA methyltransferase 0.40 PS417_04590 methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.38 AO353_15290 methyltransferase low > 101
Lysobacter sp. OAE881 0.30 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.36 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 62
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.38 Pf1N1B4_953 rRNA small subunit methyltransferase I — —
Shewanella sp. ANA-3 0.29 Shewana3_3973 putative methyltransferase (RefSeq) 0.35 Shewana3_3879 hypothetical protein (RefSeq) 0.65 2
Shewanella loihica PV-4 0.29 Shew_3607 putative methyltransferase (RefSeq) 0.36 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) low > 60
Pseudomonas sp. S08-1 0.29 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.36 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.68 9
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.37 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.37 Psyr_4112 Protein of unknown function UPF0011 low > 86
Shewanella oneidensis MR-1 0.29 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.34 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.60 1
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.33 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 40
Acinetobacter radioresistens SK82 0.28 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.32 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I low > 36
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.38 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pantoea sp. MT58 0.27 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.34 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.31 7
Pseudomonas putida KT2440 0.27 PP_5114 putative adenine methyltransferase 0.34 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 0.54 17
Pseudomonas stutzeri RCH2 0.27 Psest_0255 RNA methyltransferase, RsmD family 0.39 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.21 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 62

Not shown: 3 genomes with orthologs for GFF817 only; 19 genomes with orthologs for GFF2715 only