Conservation of cofitness between Psest_0532 and Psest_2714 in Pseudomonas stutzeri RCH2

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 1.0 Psest_2714 7-cyano-7-deazaguanine reductase 0.26 14
Pseudomonas sp. S08-1 0.88 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.80 OH686_22700 queuine synthase low > 80
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 101
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.80 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.83 Psyr_1907 GTP cyclohydrolase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.83 Psyr_1907 GTP cyclohydrolase I — —
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.27 35
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.80 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas sp. RS175 0.85 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.82 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas fluorescens SBW25 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas simiae WCS417 0.85 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.79 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Marinobacter adhaerens HP15 0.71 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.46 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.45 B158DRAFT_2159 7-cyano-7-deazaguanine reductase low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.49 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 78
Escherichia coli ECOR27 0.69 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 57
Klebsiella michiganensis M5al 0.69 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase — —
Escherichia coli BL21 0.69 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.50 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) low > 60
Escherichia coli ECRC102 0.69 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC101 0.69 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECOR38 0.69 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.50 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Escherichia coli ECRC101 0.69 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC98 0.69 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia fergusonii Becca 0.69 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.50 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 86
Escherichia coli BW25113 0.69 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.50 b2794 yqcD hypothetical protein (NCBI) low > 76
Escherichia coli ECRC99 0.69 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Escherichia coli ECRC62 0.69 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.53 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.45 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 74
Pantoea sp. MT58 0.68 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Rhodanobacter denitrificans MT42 0.68 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 63
Shewanella amazonensis SB2B 0.68 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 62
Shewanella sp. ANA-3 0.68 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.49 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.68 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 59
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.50 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase low > 76
Dickeya dianthicola 67-19 0.68 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 71
Shewanella oneidensis MR-1 0.68 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.49 SO1608 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.68 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.46 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 70
Dickeya dadantii 3937 0.67 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Serratia liquefaciens MT49 0.67 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 86
Dickeya dianthicola ME23 0.67 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Lysobacter sp. OAE881 0.67 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.31 13
Shewanella loihica PV-4 0.67 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 60
Enterobacter sp. TBS_079 0.67 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.50 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 85
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.53 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Rahnella sp. WP5 0.66 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 89
Dechlorosoma suillum PS 0.65 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.54 Dsui_0505 7-cyano-7-deazaguanine reductase low > 51
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.45 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 153
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.46 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 109
Castellaniella sp019104865 MT123 0.63 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 48
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.45 H281DRAFT_01889 7-cyano-7-deazaguanine reductase low > 103
Ralstonia solanacearum PSI07 0.63 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.53 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 81
Ralstonia solanacearum GMI1000 0.62 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.53 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Acinetobacter radioresistens SK82 0.62 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.40 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 36
Ralstonia solanacearum UW163 0.62 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.53 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.53 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.52 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 128
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 0.48 HSERO_RS19515 7-cyano-7-deazaguanine reductase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF613 tRNA-i(6)A37 methylthiotransferase 0.46 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 90
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 79
Variovorax sp. SCN45 0.60 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) low > 127
Variovorax sp. OAS795 0.60 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.45 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 91

Not shown: 33 genomes with orthologs for Psest_0532 only; 2 genomes with orthologs for Psest_2714 only