Conservation of cofitness between Psest_1242 and Psest_2714 in Pseudomonas stutzeri RCH2

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 1.0 Psest_2714 7-cyano-7-deazaguanine reductase 0.42 3
Pseudomonas sp. S08-1 0.93 OH686_17430 tRNA-guanine transglycosylase 0.80 OH686_22700 queuine synthase low > 80
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1228 tRNA-guanine transglycosylase 0.83 Psyr_1907 GTP cyclohydrolase I — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1228 tRNA-guanine transglycosylase 0.83 Psyr_1907 GTP cyclohydrolase I — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.80 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.72 2
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_15790 queuine tRNA-ribosyltransferase 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase — —
Pseudomonas sp. RS175 0.92 PFR28_00277 Queuine tRNA-ribosyltransferase 0.82 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.25 87
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.80 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.75 2
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.55 2
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_06690 queuine tRNA-ribosyltransferase 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.45 4
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.54 5
Pseudomonas fluorescens SBW25 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas simiae WCS417 0.90 PS417_23245 queuine tRNA-ribosyltransferase 0.79 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase — —
Pseudomonas putida KT2440 0.89 PP_0833 queuine tRNA-ribosyltransferase 0.79 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.21 84
Marinobacter adhaerens HP15 0.78 HP15_1479 queuine tRNA-ribosyltransferase 0.46 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.49 3
Alteromonas macleodii MIT1002 0.75 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.46 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 70
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.45 B158DRAFT_2159 7-cyano-7-deazaguanine reductase 0.57 6
Serratia liquefaciens MT49 0.74 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.49 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.49 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 78
Enterobacter asburiae PDN3 0.73 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.50 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.50 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 85
Rahnella sp. WP5 0.73 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.50 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 89
Klebsiella michiganensis M5al 0.73 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.51 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase — —
Shewanella sp. ANA-3 0.73 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.49 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.73 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 62
Acinetobacter radioresistens SK82 0.73 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.40 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.91 2
Dickeya dadantii 3937 0.73 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.46 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Dickeya dianthicola ME23 0.72 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 71
Shewanella oneidensis MR-1 0.72 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.49 SO1608 conserved hypothetical protein (NCBI ptt file) 0.43 23
Escherichia coli ECOR38 0.72 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.51 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 85
Escherichia coli ECRC99 0.72 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.51 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC98 0.72 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.51 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.50 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Escherichia coli ECRC101 0.72 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.51 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC102 0.72 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.51 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli BL21 0.72 ECD_00354 tRNA-guanine transglycosylase 0.50 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) low > 60
Escherichia coli ECRC62 0.72 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.50 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Shewanella loihica PV-4 0.72 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 60
Escherichia coli ECRC101 0.72 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.51 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli Nissle 1917 0.72 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.50 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECOR27 0.72 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.50 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 57
Escherichia fergusonii Becca 0.72 EFB2_03651 Queuine tRNA-ribosyltransferase 0.50 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 86
Escherichia coli BW25113 0.72 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.50 b2794 yqcD hypothetical protein (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.48 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Pantoea sp. MT58 0.71 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.46 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.53 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Erwinia tracheiphila SCR3 0.70 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Lysobacter sp. OAE881 0.69 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.46 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.42 40
Dechlorosoma suillum PS 0.68 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.54 Dsui_0505 7-cyano-7-deazaguanine reductase low > 51
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.45 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 74
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.87 3
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.52 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 59
Rhodanobacter denitrificans MT42 0.65 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.52 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.73 4
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.53 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.48 HSERO_RS19515 7-cyano-7-deazaguanine reductase 0.29 45
Castellaniella sp019104865 MT123 0.64 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 48
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS17400 queuine tRNA-ribosyltransferase 0.52 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 128
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.45 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.46 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 90
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.51 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.46 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.22 65
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04670 tRNA-guanine transglycosylase 0.45 H281DRAFT_01889 7-cyano-7-deazaguanine reductase low > 103
Acidovorax sp. GW101-3H11 0.60 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.53 7
Ralstonia solanacearum GMI1000 0.60 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.53 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.53 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 7
Ralstonia solanacearum UW163 0.59 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.53 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Variovorax sp. SCN45 0.59 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) low > 127
Variovorax sp. OAS795 0.59 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.45 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 91
Ralstonia solanacearum PSI07 0.58 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.53 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 81

Not shown: 30 genomes with orthologs for Psest_1242 only; 1 genomes with orthologs for Psest_2714 only