| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | 1.0 | HP15_2229 | | phosphoenolpyruvate synthase | 0.32 | 10 |
| Pseudomonas syringae pv. syringae B728a | 0.60 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.80 | Psyr_2090 | | phosphoenolpyruvate synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.60 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.80 | Psyr_2090 | | phosphoenolpyruvate synthase | low | > 86 |
| Pseudomonas putida KT2440 | 0.59 | PP_2169 | | tRNA-dihydrouridine synthase A | 0.81 | PP_2082 | | phosphoenolpyruvate synthetase | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_2706 | | tRNA dihydrouridine synthase A | 0.81 | Psest_2316 | | phosphoenolpyruvate synthase | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.57 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | 0.79 | Pf6N2E2_2389 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_02170 | | tRNA-dihydrouridine synthase A | 0.79 | AO356_02825 | | phosphoenolpyruvate synthase | low | > 104 |
| Pseudomonas sp. RS175 | 0.56 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | 0.79 | PFR28_01038 | | Phosphoenolpyruvate synthase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.56 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | 0.81 | Pf1N1B4_3826 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.56 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.81 | PFLU_RS22630 | | phosphoenolpyruvate synthase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.56 | AO353_00295 | | tRNA-dihydrouridine synthase A | 0.81 | AO353_00865 | | phosphoenolpyruvate synthase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.56 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.81 | PFLU_RS22630 | | phosphoenolpyruvate synthase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.56 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | 0.81 | OH686_01660 | | phosphoenolpyruvate synthase | low | > 80 |
| Rahnella sp. WP5 | 0.56 | EX31_RS11865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | EX31_RS13935 | | phosphoenolpyruvate synthase | low | > 89 |
| Pseudomonas simiae WCS417 | 0.56 | PS417_07740 | | tRNA-dihydrouridine synthase A | 0.81 | PS417_21020 | | phosphoenolpyruvate synthase | low | > 88 |
| Shewanella loihica PV-4 | 0.55 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.71 | Shew_1549 | | phosphoenolpyruvate synthase (RefSeq) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.55 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.70 | CSW01_19050 | | phosphoenolpyruvate synthase | low | > 62 |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | 0.71 | EX28DRAFT_1704 | | phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 76 |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS01900 | | tRNA-dihydrouridine synthase A | 0.70 | BWI76_RS17065 | | phosphoenolpyruvate synthase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF1418 | | tRNA dihydrouridine synthase A (EC 1.-.-.-) | 0.70 | GFF3539 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | 0.71 | MPMX20_01922 | | Phosphoenolpyruvate synthase | low | > 85 |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_11560 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | HEPCGN_05510 | ppsA | phosphoenolpyruvate synthase | low | > 87 |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | ECOLIN_RS09510 | | phosphoenolpyruvate synthase | — | — |
| Escherichia coli BW25113 | 0.54 | b4049 | dusA | tRNA-dihydrouridine synthase A (RefSeq) | 0.71 | b1702 | pps | phosphoenolpyruvate synthase (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.54 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | 0.71 | EFB2_02289 | | Phosphoenolpyruvate synthase | low | > 86 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_05195 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | NOLOHH_17665 | ppsA | phosphoenolpyruvate synthase | low | > 75 |
| Escherichia coli BL21 | 0.54 | ECD_03921 | | tRNA-dihydrouridine synthase A | 0.71 | ECD_01671 | | phosphoenolpyruvate synthase | low | > 61 |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_10790 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | NIAGMN_00920 | ppsA | phosphoenolpyruvate synthase | — | — |
| Escherichia coli ECRC62 | 0.54 | BNILDI_06330 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | BNILDI_16455 | ppsA | phosphoenolpyruvate synthase | low | > 75 |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | 0.79 | PfGW456L13_4112 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 87 |
| Escherichia coli ECRC100 | 0.54 | OKFHMN_12945 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | OKFHMN_27145 | ppsA | phosphoenolpyruvate synthase | low | > 80 |
| Escherichia coli ECRC99 | 0.54 | KEDOAH_15205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | KEDOAH_00965 | ppsA | phosphoenolpyruvate synthase | — | — |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_16580 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | JDDGAC_01720 | ppsA | phosphoenolpyruvate synthase | low | > 86 |
| Shewanella amazonensis SB2B | 0.54 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.73 | Sama_2072 | | phosphoenolpyruvate synthase (RefSeq) | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS03680 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.70 | HER17_RS08885 | | phosphoenolpyruvate synthase | low | > 75 |
| Escherichia coli ECRC101 | 0.53 | MCAODC_03455 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | MCAODC_18265 | ppsA | phosphoenolpyruvate synthase | low | > 87 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.72 | Shewana3_1736 | | phosphoenolpyruvate synthase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.53 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | 0.72 | SO2644 | ppsA | phosphoenolpyruvate synthase (NCBI ptt file) | low | > 76 |
| Pantoea sp. MT58 | 0.53 | IAI47_17865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | IAI47_10905 | | phosphoenolpyruvate synthase | low | > 76 |
| Kangiella aquimarina DSM 16071 | 0.53 | B158DRAFT_2018 | | tRNA dihydrouridine synthase A | 0.74 | B158DRAFT_1553 | | phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 40 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.70 | IAI46_11115 | | phosphoenolpyruvate synthase | low | > 86 |
| Dickeya dadantii 3937 | 0.53 | DDA3937_RS17480 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.70 | DDA3937_RS12805 | | phosphoenolpyruvate synthase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.52 | HGI48_RS17540 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | HGI48_RS12875 | | phosphoenolpyruvate synthase | low | > 71 |
| Dickeya dianthicola ME23 | 0.52 | DZA65_RS18620 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.70 | DZA65_RS13340 | | phosphoenolpyruvate synthase | low | > 75 |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.65 | QEN71_RS06505 | | phosphoenolpyruvate synthase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | 0.66 | BPHYT_RS12055 | | phosphoenolpyruvate synthase | low | > 109 |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS23765 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.71 | LU632_RS11025 | ppsA | phosphoenolpyruvate synthase | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_00482 | | tRNA-dihydrouridine(20/20a) synthase | 0.77 | MPMX26_01166 | | Phosphoenolpyruvate synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.50 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.65 | RS_RS07130 | | phosphoenolpyruvate synthase | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.50 | ABZR87_RS11300 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.66 | ABZR87_RS11925 | | phosphoenolpyruvate synthase | low | > 80 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS03925 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.65 | ABIE51_RS09520 | | phosphoenolpyruvate synthase | low | > 62 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS13915 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.67 | ABID97_RS10815 | | phosphoenolpyruvate synthase | low | > 91 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | 0.66 | H281DRAFT_00627 | | phosphoenolpyruvate synthase | low | > 103 |
| Synechococcus elongatus PCC 7942 | 0.49 | Synpcc7942_2066 | | tRNA-dihydrouridine synthase A | 0.55 | Synpcc7942_0781 | ppsA | phosphoenolpyruvate synthase | low | > 38 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | 0.66 | ABIE53_002485 | | pyruvate,water dikinase | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS12665 | | tRNA-dihydrouridine synthase A | 0.65 | RR42_RS11790 | | phosphoenolpyruvate synthase | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.49 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.65 | RPSI07_RS17015 | | phosphoenolpyruvate synthase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.48 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.65 | RALBFv3_RS00475 | | phosphoenolpyruvate synthase | — | — |
| Ralstonia solanacearum UW163 | 0.48 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.64 | UW163_RS13805 | | phosphoenolpyruvate synthase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.48 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.65 | ABZR86_RS07250 | | phosphoenolpyruvate synthase | low | > 74 |
| Variovorax sp. SCN45 | 0.48 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | 0.67 | GFF2818 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | 0.61 | 96 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.67 | LRK55_RS16585 | | phosphoenolpyruvate synthase | 0.78 | 37 |
| Rhodanobacter denitrificans FW104-10B01 | 0.47 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.67 | LRK54_RS16870 | | phosphoenolpyruvate synthase | low | > 59 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF4791 | | tRNA dihydrouridine synthase A | 0.67 | GFF3920 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 90 |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_00625 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.67 | OKGIIK_07970 | ppsA | phosphoenolpyruvate synthase | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.46 | Xcc-8004.5010.1 | | tRNA dihydrouridine synthase A | 0.66 | Xcc-8004.2412.1 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | 0.72 | MIT1002_01816 | | Phosphoenolpyruvate synthase | low | > 70 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_2288 | | tRNA dihydrouridine synthase A | 0.67 | Ac3H11_206 | | Phosphoenolpyruvate synthase (EC 2.7.9.2) | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.40 | ABCV34_RS04335 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.67 | ABCV34_RS04025 | | phosphoenolpyruvate synthase | — | — |