| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2180 | | transcriptional regulator, RpiR family protein | 1.0 | HP15_1829 | | tRNA pseudouridine synthase A | 0.42 | 10 |
| Pseudomonas stutzeri RCH2 | 0.61 | Psest_0851 | | Transcriptional regulators | 0.44 | Psest_2585 | | pseudouridylate synthase I | low | > 67 |
| Pseudomonas sp. RS175 | 0.60 | PFR28_00572 | | HTH-type transcriptional regulator HexR | 0.45 | PFR28_02817 | | tRNA pseudouridine synthase A | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.60 | PfGW456L13_1900 | | Phosphogluconate repressor HexR, RpiR family | 0.45 | PfGW456L13_3941 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas putida KT2440 | 0.60 | PP_1021 | | DNA-binding transcriptional regulator | 0.47 | PP_1994 | | tRNA pseudouridine (38-40)synthase | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.60 | Pf6N2E2_2886 | | Phosphogluconate repressor HexR, RpiR family | 0.46 | Pf6N2E2_70 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.28 | 54 |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_05165 | | transcriptional regulator | 0.46 | AO356_21435 | | pseudouridine synthase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.60 | Pf1N1B4_590 | | Phosphogluconate repressor HexR, RpiR family | 0.46 | Pf1N1B4_7 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | 0.46 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | 0.46 | Psyr_1662 | | tRNA pseudouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | 0.46 | Psyr_1662 | | tRNA pseudouridine synthase | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | 0.46 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_03365 | | transcriptional regulator | 0.45 | AO353_20660 | | pseudouridine synthase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.59 | PS417_22115 | | transcriptional regulator | 0.46 | PS417_18565 | | pseudouridine synthase | — | — |
| Pseudomonas sp. S08-1 | 0.59 | OH686_02440 | | Phosphogluconate repressor HexR, RpiR family | 0.47 | OH686_04450 | | tRNA pseudouridine(38-40) synthase | low | > 80 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_14580 | | MurR/RpiR family transcriptional regulator | 0.47 | IAI46_17840 | | tRNA pseudouridine(38-40) synthase TruA | 0.38 | 80 |
| Shewanella amazonensis SB2B | 0.56 | Sama_1813 | | DNA-binding transcriptional regulator HexR (RefSeq) | 0.49 | Sama_2150 | truA | tRNA pseudouridine synthase A (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.55 | EX31_RS10635 | | MurR/RpiR family transcriptional regulator | 0.47 | EX31_RS19600 | | tRNA pseudouridine(38-40) synthase TruA | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS11785 | | MurR/RpiR family transcriptional regulator | 0.46 | HER17_RS06990 | | tRNA pseudouridine(38-40) synthase TruA | low | > 75 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS10575 | | MurR/RpiR family transcriptional regulator | 0.47 | DZA65_RS15370 | | tRNA pseudouridine(38-40) synthase TruA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS10160 | | MurR/RpiR family transcriptional regulator | 0.47 | HGI48_RS14435 | | tRNA pseudouridine(38-40) synthase TruA | low | > 71 |
| Dickeya dadantii 3937 | 0.54 | DDA3937_RS10130 | | MurR/RpiR family transcriptional regulator | 0.47 | DDA3937_RS14465 | | tRNA pseudouridine(38-40) synthase TruA | low | > 74 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_2152 | | DNA-binding transcriptional regulator HexR (RefSeq) | 0.48 | Shewana3_1479 | truA | tRNA pseudouridine synthase A (RefSeq) | low | > 73 |
| Escherichia coli ECRC101 | 0.54 | OKFHMN_26325 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | OKFHMN_22670 | truA | aspartate-semialdehyde dehydrogenase | — | — |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_00900 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | JDDGAC_26630 | truA | aspartate-semialdehyde dehydrogenase | — | — |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_16840 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | NOLOHH_14305 | truA | tRNA pseudouridine(38-40) synthase TruA | low | > 57 |
| Escherichia coli ECRC99 | 0.54 | KEDOAH_01780 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | KEDOAH_05525 | truA | aspartate-semialdehyde dehydrogenase | — | — |
| Escherichia coli ECRC101 | 0.54 | MCAODC_19080 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | MCAODC_13710 | truA | aspartate-semialdehyde dehydrogenase | — | — |
| Escherichia coli ECRC62 | 0.54 | BNILDI_15635 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | BNILDI_13225 | truA | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_04730 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | HEPCGN_21875 | truA | aspartate-semialdehyde dehydrogenase | low | > 85 |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_01735 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | NIAGMN_20445 | truA | aspartate-semialdehyde dehydrogenase | — | — |
| Shewanella loihica PV-4 | 0.54 | Shew_2049 | | DNA-binding transcriptional regulator HexR (RefSeq) | 0.47 | Shew_2306 | | tRNA pseudouridine synthase A (RefSeq) | — | — |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS10325 | | DNA-binding transcriptional regulator HexR | 0.46 | ECOLIN_RS13435 | | tRNA pseudouridine(38-40) synthase TruA | low | > 52 |
| Escherichia coli BW25113 | 0.54 | b1853 | yebK | predicted DNA-binding transcriptional regulator (NCBI) | 0.47 | b2318 | truA | tRNA pseudouridine synthase A (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.54 | EFB2_02089 | | HTH-type transcriptional regulator HexR | 0.46 | EFB2_01540 | | tRNA pseudouridine synthase A | low | > 86 |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS18110 | | transcriptional regulator HexR | 0.46 | BWI76_RS20380 | | tRNA pseudouridine(38-40) synthase TruA | low | > 92 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.54 | OHPLBJKB_01875 | | HTH-type transcriptional regulator HexR | 0.46 | OHPLBJKB_01387 | | tRNA pseudouridine synthase A | low | > 73 |
| Escherichia coli BL21 | 0.54 | ECD_01824 | | putative DNA-binding transcriptional regulator | 0.46 | ECD_02243 | | tRNA pseudouridine(38-40) synthase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.54 | CSW01_05825 | | transcriptional regulator HexR | 0.47 | CSW01_05090 | | tRNA pseudouridine(38-40) synthase TruA | low | > 62 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF1632 | | Phosphogluconate repressor HexR, RpiR family | 0.47 | GFF1934 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_0703 | | transcriptional regulator, RpiR family | 0.47 | EX28DRAFT_0286 | | tRNA pseudouridine(38-40) synthase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.53 | MPMX20_02758 | | HTH-type transcriptional regulator HexR | 0.47 | MPMX20_03253 | | tRNA pseudouridine synthase A | low | > 85 |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_02408 | | putative HTH-type transcriptional regulator YbbH | 0.46 | MIT1002_02529 | | tRNA pseudouridine synthase A | — | — |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS13365 | | MurR/RpiR family transcriptional regulator | 0.44 | LU632_RS07825 | truA | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Pantoea sp. MT58 | 0.48 | IAI47_08490 | | MurR/RpiR family transcriptional regulator | 0.42 | IAI47_06245 | | tRNA pseudouridine(38-40) synthase TruA | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS08655 | | SIS domain-containing protein | 0.37 | ABCV34_RS04265 | | tRNA pseudouridine(38-40) synthase TruA | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.36 | SMc02460 | | hypothetical protein | 0.28 | SMc01099 | | tRNA pseudouridine synthase A | low | > 103 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_04279 | | transcriptional regulator, RpiR family | 0.38 | H281DRAFT_06069 | | tRNA pseudouridine38-40 synthase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_003518 | | RpiR family carbohydrate utilization transcriptional regulator | 0.38 | ABIE53_004807 | | tRNA pseudouridine38-40 synthase | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS06120 | | transcriptional regulator | 0.34 | RR42_RS14370 | | tRNA pseudouridine synthase A | — | — |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS16740 | | transcriptional regulator | 0.38 | BPHYT_RS33885 | | tRNA pseudouridine synthase A | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF1364 | | Phosphogluconate repressor HexR, RpiR family | 0.38 | GFF3357 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_2055 | | Probable transcriptional regulator | 0.40 | Ac3H11_1532 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 79 |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS05505 | | transcriptional regulator | 0.42 | HSERO_RS16485 | | tRNA pseudouridine synthase A | low | > 78 |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_05117 | | HTH-type transcriptional regulator HexR | 0.29 | MPMX19_02005 | | tRNA pseudouridine synthase A | — | — |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS30190 | | transcriptional regulator | 0.29 | AZOBR_RS03570 | | tRNA pseudouridine synthase A | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS26925 | | MurR/RpiR family transcriptional regulator | 0.37 | QEN71_RS17635 | | tRNA pseudouridine(38-40) synthase TruA | low | > 153 |
| Rhizobium sp. OAE497 | 0.24 | ABIE40_RS21410 | | MurR/RpiR family transcriptional regulator | 0.26 | ABIE40_RS01915 | | tRNA pseudouridine(38-40) synthase TruA | low | > 107 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS19110 | | MurR/RpiR family transcriptional regulator | 0.35 | ABZR87_RS14510 | | tRNA pseudouridine(38-40) synthase TruA | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS22855 | | MurR/RpiR family transcriptional regulator | 0.37 | RS_RS09975 | | tRNA pseudouridine(38-40) synthase TruA | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.23 | RALBFv3_RS18180 | | MurR/RpiR family transcriptional regulator | 0.36 | RALBFv3_RS02595 | | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Ralstonia solanacearum UW163 | 0.23 | UW163_RS20950 | | MurR/RpiR family transcriptional regulator | 0.36 | UW163_RS11130 | | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Ralstonia solanacearum PSI07 | 0.23 | RPSI07_RS05455 | | MurR/RpiR family transcriptional regulator | 0.35 | RPSI07_RS14720 | | tRNA pseudouridine(38-40) synthase TruA | low | > 81 |
| Agrobacterium fabrum C58 | 0.23 | Atu2598 | | transcriptional regulator, RpiR family | 0.28 | Atu0368 | | tRNA pseudouridine synthase I | low | > 89 |
| Variovorax sp. OAS795 | 0.21 | ABID97_RS22860 | | MurR/RpiR family transcriptional regulator | 0.39 | ABID97_RS08440 | | tRNA pseudouridine(38-40) synthase TruA | low | > 91 |
| Variovorax sp. SCN45 | 0.20 | GFF6715 | | Transcriptional regulator of RpiR family in catabolic operon | 0.37 | GFF3885 | | tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) | low | > 127 |
| Bifidobacterium breve UCC2003 | 0.15 | BBR_RS13225 | | MurR/RpiR family transcriptional regulator | 0.17 | BBR_RS18795 | | tRNA pseudouridine(38-40) synthase TruA | low | > 34 |
| Rhodanobacter denitrificans FW104-10B01 | 0.10 | LRK54_RS11515 | | MurR/RpiR family transcriptional regulator | 0.37 | LRK54_RS01700 | | tRNA pseudouridine(38-40) synthase TruA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.10 | LRK55_RS11245 | | MurR/RpiR family transcriptional regulator | 0.37 | LRK55_RS01480 | | tRNA pseudouridine(38-40) synthase TruA | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.10 | OKGIIK_12345 | rpiR | transcriptional regulator | 0.34 | OKGIIK_04830 | truA | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.09 | ABZR86_RS12100 | | MurR/RpiR family transcriptional regulator | 0.34 | ABZR86_RS08015 | | tRNA pseudouridine(38-40) synthase TruA | low | > 74 |
Not shown: 1 genomes with orthologs for HP15_2180 only; 29 genomes with orthologs for HP15_1829 only