Conservation of cofitness between GFF2390 and GFF1710 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 1.0 GFF1710 Kup system potassium uptake protein 0.84 12
Escherichia coli ECOR38 0.90 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.98 HEPCGN_13465 kup low affinity potassium transporter Kup low > 87
Escherichia coli ECRC62 0.90 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.98 BNILDI_04635 kup low affinity potassium transporter Kup low > 75
Escherichia coli ECOR27 0.90 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.98 NOLOHH_06890 kup low affinity potassium transporter Kup low > 75
Escherichia coli BW25113 0.90 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.98 b3747 trkD potassium transporter (NCBI) 0.30 36
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.98 OHPLBJKB_04306 Low affinity potassium transport system protein kup low > 73
Escherichia coli ECRC99 0.90 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.97 KEDOAH_13395 kup low affinity potassium transporter Kup — —
Escherichia coli ECRC101 0.90 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.97 MCAODC_05260 kup low affinity potassium transporter Kup low > 87
Escherichia coli ECRC102 0.90 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.97 NIAGMN_12510 kup low affinity potassium transporter Kup — —
Escherichia coli ECRC98 0.90 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.97 JDDGAC_18375 kup low affinity potassium transporter Kup low > 86
Escherichia coli ECRC100 0.90 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.97 OKFHMN_14755 kup low affinity potassium transporter Kup 0.72 78
Escherichia coli BL21 0.90 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.98 ECD_03631 potassium transporter low > 61
Escherichia fergusonii Becca 0.90 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.98 EFB2_04886 Low affinity potassium transport system protein kup low > 86
Escherichia coli Nissle 1917 0.90 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.98 ECOLIN_RS21545 low affinity potassium transporter Kup low > 55
Klebsiella michiganensis M5al 0.88 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.95 BWI76_RS00265 potassium transporter Kup low > 92
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.95 EX28DRAFT_4023 potassium uptake protein low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.94 MPMX20_04620 Low affinity potassium transport system protein kup low > 85
Serratia liquefaciens MT49 0.74 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.88 IAI46_25080 low affinity potassium transporter Kup low > 86
Dickeya dianthicola ME23 0.71 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.85 DZA65_RS22335 low affinity potassium transporter Kup 0.36 60
Dickeya dianthicola 67-19 0.71 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.85 HGI48_RS21355 low affinity potassium transporter Kup low > 71
Pantoea sp. MT58 0.71 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.89 IAI47_00330 low affinity potassium transporter Kup low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.85 DDA3937_RS00025 low affinity potassium transporter Kup 0.58 17
Rahnella sp. WP5 0.71 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.86 EX31_RS06165 low affinity potassium transporter Kup low > 89
Pectobacterium carotovorum WPP14 0.71 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.86 HER17_RS21570 low affinity potassium transporter Kup low > 75
Erwinia tracheiphila SCR3 0.70 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.86 LU632_RS24840 kup low affinity potassium transporter Kup low > 74
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.45 CSW01_16880 potassium transporter Kup low > 62
Pseudomonas sp. S08-1 0.41 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.48 OH686_18885 Kup system potassium uptake protein low > 80
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.49 Pf6N2E2_1789 Kup system potassium uptake protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_10630 16S rRNA methyltransferase 0.51 AO353_16880 potassium transporter Kup low > 101
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_11275 16S rRNA methyltransferase 0.46 AO356_05595 potassium transporter Kup low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.49 Psyr_1394 potassium transporter low > 86
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.49 Psyr_1394 potassium transporter low > 86
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.50 Pf1N1B4_3162 Kup system potassium uptake protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.50 PFLU_RS05955 potassium transporter Kup low > 109
Pseudomonas fluorescens SBW25 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.50 PFLU_RS05955 potassium transporter Kup low > 109
Pseudomonas sp. RS175 0.41 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.46 PFR28_00487 Low affinity potassium transport system protein kup low > 88
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.48 PfGW456L13_4652 Kup system potassium uptake protein low > 87
Pseudomonas simiae WCS417 0.40 PS417_00085 16S rRNA methyltransferase 0.50 PS417_05885 potassium transporter Kup low > 88
Pseudomonas putida KT2440 0.40 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.46 PP_1200 Probable potassium transport system protein kup low > 96
Lysobacter sp. OAE881 0.35 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.45 ABIE51_RS05050 potassium transporter Kup — —
Dechlorosoma suillum PS 0.34 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.49 Dsui_3457 K+ transporter low > 51
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.4741.1 hypothetical protein 0.46 Xcc-8004.1437.1 Kup system potassium uptake protein low > 74
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 OKGIIK_01845 kup potassium uptake protein low > 52
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 ABZR86_RS10835 potassium transporter Kup — —
Acinetobacter radioresistens SK82 0.32 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.48 MPMX26_02859 Low affinity potassium transport system protein kup — —
Ralstonia solanacearum PSI07 0.32 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 RPSI07_RS15930 potassium transporter Kup low > 81
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.48 ABZR87_RS19680 potassium transporter Kup low > 80
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.51 H281DRAFT_00529 KUP system potassium uptake protein low > 103
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.53 QEN71_RS06040 potassium transporter Kup low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.47 GFF2646 Kup system potassium uptake protein low > 90
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS01475 16S rRNA methyltransferase 0.52 BPHYT_RS12515 potassium transporter Kup — —
Paraburkholderia graminis OAS925 0.30 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.51 ABIE53_002729 KUP system potassium uptake protein low > 113
Ralstonia solanacearum GMI1000 0.30 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.48 RS_RS22210 potassium transporter Kup low > 80
Castellaniella sp019104865 MT123 0.30 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 ABCV34_RS06505 potassium transporter Kup — —
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.49 LRK54_RS04905 potassium transporter Kup — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 RALBFv3_RS01560 potassium transporter Kup 0.36 70
Ralstonia solanacearum UW163 0.30 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 UW163_RS14870 potassium transporter Kup — —
Rhodanobacter denitrificans MT42 0.30 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.49 LRK55_RS04685 potassium transporter Kup — —
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS20450 16S rRNA methyltransferase 0.49 RR42_RS07555 potassium transporter Kup low > 128
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS00355 methyltransferase 0.47 HSERO_RS00295 potassium transporter Kup — —
Acidovorax sp. GW101-3H11 0.27 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.47 Ac3H11_709 Kup system potassium uptake protein low > 79
Variovorax sp. SCN45 0.25 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) 0.46 GFF6324 Kup system potassium uptake protein low > 127
Variovorax sp. OAS795 0.24 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.45 ABID97_RS04610 potassium transporter Kup low > 91
Rhodopseudomonas palustris CGA009 0.22 TX73_000155 transcription antitermination factor NusB 0.49 TX73_015670 potassium transporter Kup low > 86
Caulobacter crescentus NA1000 0.22 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.43 CCNA_00130 Kup system potassium uptake protein — —
Azospirillum sp. SherDot2 0.22 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.48 MPMX19_02182 Low affinity potassium transport system protein kup low > 112
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.43 CCNA_00130 Kup system potassium uptake protein — —
Azospirillum brasilense Sp245 0.22 AZOBR_RS00235 MFS transporter 0.48 AZOBR_RS10270 potassium transport protein Kup low > 97
Bosea sp. OAE506 0.22 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.41 ABIE41_RS09025 potassium transporter Kup — —
Magnetospirillum magneticum AMB-1 0.21 AMB_RS00745 MFS transporter 0.50 AMB_RS04410 potassium transporter Kup — —
Agrobacterium fabrum C58 0.21 Atu2825 Sun protein 0.42 Atu0711 potassium uptake protein low > 89
Rhizobium sp. OAE497 0.21 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.44 ABIE40_RS19945 potassium transporter Kup low > 107
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases 0.44 Ga0059261_3901 K+ transporter — —
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.42 A4249_RS13170 potassium transporter Kup — —
Desulfovibrio vulgaris Miyazaki F 0.12 DvMF_2042 NusB/RsmB/TIM44 (RefSeq) 0.44 DvMF_0985 K potassium transporter (RefSeq) 0.29 51

Not shown: 15 genomes with orthologs for GFF2390 only; 2 genomes with orthologs for GFF1710 only