Conservation of cofitness between PS417_27705 and PS417_05575 in Pseudomonas simiae WCS417

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27705 amino acid dehydrogenase 1.0 PS417_05575 Glycerol kinase (EC 2.7.1.30) (from data) 0.25 15
Pseudomonas fluorescens SBW25 0.98 PFLU_RS29380 D-amino acid dehydrogenase 0.98 PFLU_RS05660 glycerol kinase GlpK 0.58 45
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS29380 D-amino acid dehydrogenase 0.98 PFLU_RS05660 glycerol kinase GlpK 0.26 52
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.98 Pf6N2E2_5574 Glycerol kinase (EC 2.7.1.30) low > 103
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_09155 amino acid dehydrogenase 0.97 AO353_04180 glycerol kinase low > 101
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.96 PfGW456L13_1734 Glycerol kinase (EC 2.7.1.30) low > 87
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.98 Pf1N1B4_767 Glycerol kinase (EC 2.7.1.30) low > 87
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_12620 amino acid dehydrogenase 0.98 AO356_18250 glycerol kinase low > 104
Pseudomonas sp. RS175 0.94 PFR28_04399 D-amino acid dehydrogenase 1 0.96 PFR28_03368 Glycerol kinase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_0235 D-amino acid dehydrogenase small subunit 0.90 Psyr_3905 glycerol kinase low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_0235 D-amino acid dehydrogenase small subunit 0.90 Psyr_3905 glycerol kinase low > 86
Pseudomonas putida KT2440 0.90 PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) 0.89 PP_1075 glycerol kinase 0.22 32
Pseudomonas sp. S08-1 0.89 OH686_13685 D-amino acid dehydrogenase 0.55 OH686_20375 glycerol kinase low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.80 Psest_2773 glycerol kinase low > 67
Rhodanobacter denitrificans FW104-10B01 0.76 LRK54_RS00590 D-amino acid dehydrogenase 0.57 LRK54_RS06535 glycerol kinase GlpK low > 59
Rhodanobacter sp. FW510-T8 0.76 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.55 OKGIIK_00030 glpK glycerol kinase GlpK low > 52
Rhodanobacter denitrificans MT42 0.76 LRK55_RS00360 D-amino acid dehydrogenase 0.57 LRK55_RS06280 glycerol kinase GlpK low > 63
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.63 Xcc-8004.469.1 Glycerol kinase (EC 2.7.1.30) low > 74
Herbaspirillum seropedicae SmR1 0.66 HSERO_RS08375 D-amino acid dehydrogenase small subunit 0.55 HSERO_RS04875 glycerol kinase low > 78
Variovorax sp. OAS795 0.65 ABID97_RS22385 D-amino acid dehydrogenase 0.53 ABID97_RS19965 glycerol kinase GlpK low > 91
Paraburkholderia graminis OAS925 0.65 ABIE53_003133 D-amino-acid dehydrogenase 0.60 ABIE53_003469 glycerol kinase low > 113
Ralstonia solanacearum UW163 0.65 UW163_RS15940 D-amino acid dehydrogenase small subunit 0.55 UW163_RS06225 glycerol kinase — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS13870 D-amino acid dehydrogenase small subunit 0.55 RALBFv3_RS07395 glycerol kinase low > 76
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS09560 D-amino acid dehydrogenase 0.55 ABZR87_RS03055 glycerol kinase GlpK low > 80
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_04287 D-amino-acid dehydrogenase 0.60 H281DRAFT_04229 glycerol kinase low > 103
Ralstonia solanacearum GMI1000 0.64 RS_RS04605 D-amino acid dehydrogenase small subunit 0.55 RS_RS15335 glycerol kinase low > 80
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS14790 D-amino acid dehydrogenase 0.61 BPHYT_RS16495 glycerol kinase low > 109
Ralstonia solanacearum PSI07 0.64 RPSI07_RS19600 D-amino acid dehydrogenase small subunit 0.55 RPSI07_RS09850 glycerol kinase low > 81
Pantoea sp. MT58 0.64 IAI47_08890 D-amino acid dehydrogenase 0.74 IAI47_00825 glycerol kinase GlpK low > 76
Variovorax sp. SCN45 0.63 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) 0.54 GFF2679 Glycerol kinase (EC 2.7.1.30) low > 127
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS04190 D-amino acid dehydrogenase 0.59 QEN71_RS02230 glycerol kinase GlpK low > 153
Serratia liquefaciens MT49 0.63 IAI46_14460 D-amino acid dehydrogenase 0.75 IAI46_24600 glycerol kinase GlpK low > 86
Acinetobacter radioresistens SK82 0.63 MPMX26_01248 D-amino acid dehydrogenase 0.50 MPMX26_02393 Glycerol kinase low > 36
Dickeya dianthicola ME23 0.62 DZA65_RS11540 D-amino acid dehydrogenase 0.76 DZA65_RS21530 glycerol kinase GlpK low > 75
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS04585 amino acid dehydrogenase 0.55 RR42_RS13810 glycerol kinase low > 128
Rahnella sp. WP5 0.62 EX31_RS10485 D-amino acid dehydrogenase 0.76 EX31_RS14270 glycerol kinase GlpK low > 89
Dickeya dadantii 3937 0.62 DDA3937_RS11170 D-amino acid dehydrogenase 0.76 DDA3937_RS00890 glycerol kinase GlpK low > 74
Dickeya dianthicola 67-19 0.62 HGI48_RS11195 D-amino acid dehydrogenase 0.76 HGI48_RS20485 glycerol kinase GlpK low > 71
Enterobacter asburiae PDN3 0.62 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.76 EX28DRAFT_4399 glycerol kinase low > 76
Escherichia coli Nissle 1917 0.61 ECOLIN_RS07185 D-amino acid dehydrogenase 0.76 ECOLIN_RS22610 glycerol kinase GlpK — —
Escherichia fergusonii Becca 0.61 EFB2_02743 D-amino acid dehydrogenase 0.76 EFB2_04692 Glycerol kinase low > 86
Escherichia coli ECRC101 0.61 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.76 OKFHMN_13775 glpK glycerol kinase GlpK — —
Escherichia coli BL21 0.61 ECD_01164 D-amino acid dehydrogenase 0.76 ECD_03811 glycerol kinase low > 60
Escherichia coli ECOR38 0.61 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.76 HEPCGN_12420 glpK glycerol kinase GlpK low > 85
Escherichia coli ECOR27 0.61 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.76 NOLOHH_05910 glpK glycerol kinase GlpK low > 57
Escherichia coli ECRC99 0.61 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.76 KEDOAH_14385 glpK glycerol kinase GlpK — —
Escherichia coli ECRC98 0.61 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.76 JDDGAC_17400 glpK glycerol kinase GlpK — —
Escherichia coli ECRC62 0.61 BNILDI_18890 dadA D-amino acid dehydrogenase 0.76 BNILDI_05620 glpK glycerol kinase GlpK — —
Escherichia coli ECRC101 0.61 MCAODC_21880 dadA D-amino acid dehydrogenase 0.76 MCAODC_04275 glpK glycerol kinase GlpK — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_02500 D-amino acid dehydrogenase 0.76 OHPLBJKB_04125 Glycerol kinase low > 73
Escherichia coli ECRC102 0.61 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.76 NIAGMN_11530 glpK glycerol kinase GlpK — —
Escherichia coli BW25113 0.61 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.76 b3926 glpK glycerol kinase (NCBI) low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_02699 D-amino acid dehydrogenase 0.76 MPMX20_04543 Glycerol kinase low > 85
Pectobacterium carotovorum WPP14 0.61 HER17_RS11170 D-amino acid dehydrogenase 0.77 HER17_RS00825 glycerol kinase GlpK low > 75
Klebsiella michiganensis M5al 0.61 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.75 BWI76_RS27515 glycerol kinase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.75 GFF2307 Glycerol kinase (EC 2.7.1.30) low > 78
Erwinia tracheiphila SCR3 0.60 LU632_RS13070 D-amino acid dehydrogenase 0.74 LU632_RS19705 glpK glycerol kinase GlpK low > 74
Azospirillum sp. SherDot2 0.59 MPMX19_06097 D-amino acid dehydrogenase 1 0.49 MPMX19_05974 Glycerol kinase low > 112
Agrobacterium fabrum C58 0.58 Atu3293 D-amino acid dehydrogenase small subunit 0.49 Atu3890 glycerol kinase low > 89
Azospirillum brasilense Sp245 0.58 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.49 AZOBR_RS25905 glycerol kinase low > 97
Castellaniella sp019104865 MT123 0.56 ABCV34_RS10810 D-amino acid dehydrogenase 0.53 ABCV34_RS05865 glycerol kinase GlpK low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS08770 D-amino acid dehydrogenase 0.43 A4249_RS13260 glycerol kinase GlpK low > 48
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_04065 D-amino acid dehydrogenase small subunit 0.72 CSW01_17900 glycerol kinase low > 62
Dinoroseobacter shibae DFL-12 0.54 Dshi_0558 D-amino-acid dehydrogenase (RefSeq) 0.50 Dshi_3420 Glycerol kinase (EC 2.7.1.30) (from data) low > 64
Acidovorax sp. GW101-3H11 0.39 Ac3H11_832 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.53 Ac3H11_789 Glycerol kinase (EC 2.7.1.30) low > 79
Marinobacter adhaerens HP15 0.38 HP15_2610 D-amino acid dehydrogenase small subunit 0.55 HP15_2166 glycerol kinase low > 73
Rhodospirillum rubrum S1H 0.38 Rru_A1546 FAD dependent oxidoreductase (NCBI) 0.46 Rru_A2009 Glycerol kinase (NCBI) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1973 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.55 GFF2807 Glycerol kinase (EC 2.7.1.30) low > 90
Sphingomonas koreensis DSMZ 15582 0.23 Ga0059261_3351 Glycine/D-amino acid oxidases (deaminating) 0.40 Ga0059261_0833 Glycerol kinase low > 68
Pedobacter sp. GW460-11-11-14-LB5 0.19 CA265_RS05715 amino acid dehydrogenase 0.58 CA265_RS07870 glycerol kinase low > 88
Dyella japonica UNC79MFTsu3.2 0.17 ABZR86_RS08930 FAD-dependent oxidoreductase 0.61 ABZR86_RS20035 glycerol kinase GlpK — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_3950 Glycine/D-amino acid oxidases (deaminating) 0.59 Echvi_1770 glycerol kinase low > 79

Not shown: 2 genomes with orthologs for PS417_27705 only; 21 genomes with orthologs for PS417_05575 only