| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_00078 | | global transcription factor | 1.0 | ECD_03013 | | 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli BW25113 | 1.00 | b0076 | leuO | probable transcriptional activator for leuABCD operon (VIMSS) | 1.00 | b3146 | yraL | predicted methyltransferase (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_08560 | leuO | transcriptional regulator LeuO | 0.99 | BNILDI_01495 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_03582 | | HTH-type transcriptional regulator LeuO | 1.00 | OHPLBJKB_00555 | | Ribosomal RNA small subunit methyltransferase I | low | > 73 |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_10705 | leuO | transcriptional regulator LeuO | 1.00 | OKFHMN_18235 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 80 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS00410 | | transcriptional regulator LeuO | 1.00 | ECOLIN_RS18085 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 55 |
| Escherichia coli ECRC101 | 0.99 | MCAODC_01220 | leuO | transcriptional regulator LeuO | 1.00 | MCAODC_08755 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 87 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_08555 | leuO | transcriptional regulator LeuO | 1.00 | NIAGMN_15995 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | — | — |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_17450 | leuO | transcriptional regulator LeuO | 1.00 | KEDOAH_09915 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | — | — |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_14300 | leuO | transcriptional regulator LeuO | 1.00 | JDDGAC_21860 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 86 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_03050 | leuO | transcriptional regulator LeuO | 0.99 | NOLOHH_10035 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 75 |
| Escherichia fergusonii Becca | 0.99 | EFB2_03970 | | HTH-type transcriptional regulator LeuO | 1.00 | EFB2_00677 | | Ribosomal RNA small subunit methyltransferase I | low | > 86 |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_08685 | leuO | transcriptional regulator LeuO | 1.00 | HEPCGN_17110 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.89 | GFF162 | | Probable transcriptional activator for leuABCD operon | 0.92 | GFF1521 | | rRNA small subunit methyltransferase I | low | > 78 |
| Enterobacter asburiae PDN3 | 0.83 | EX28DRAFT_3672 | | Transcriptional regulator | 0.89 | EX28DRAFT_3195 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 76 |
| Klebsiella michiganensis M5al | 0.82 | BWI76_RS04690 | | transcriptional regulator LeuO | 0.88 | BWI76_RS24910 | | rRNA (cytidine-2'-O-)-methyltransferase | low | > 92 |
| Enterobacter sp. TBS_079 | 0.81 | MPMX20_00770 | | HTH-type transcriptional regulator LeuO | 0.89 | MPMX20_04050 | | Ribosomal RNA small subunit methyltransferase I | low | > 85 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_03365 | | transcriptional regulator LeuO | 0.77 | IAI46_22295 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 86 |
| Rahnella sp. WP5 | 0.55 | EX31_RS03675 | | transcriptional regulator LeuO | 0.79 | EX31_RS12550 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_12575 | | transcriptional regulator LeuO | 0.68 | CSW01_03090 | | rRNA (cytidine-2'-O-)-methyltransferase | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.23 | Psest_2127 | | Transcriptional regulator | 0.57 | Psest_3270 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | low | > 67 |
| Pseudomonas putida KT2440 | 0.22 | PP_2436 | | Transcriptional regulator, LysR family | 0.55 | PP_1326 | | 16S rRNA 2'-O-ribose C1402 methyltransferase | low | > 96 |
| Variovorax sp. OAS795 | 0.22 | ABID97_RS26910 | | LysR family transcriptional regulator | 0.37 | ABID97_RS00285 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | — | — |
| Pseudomonas sp. RS175 | 0.22 | PFR28_01264 | | PCP degradation transcriptional activation protein | 0.56 | PFR28_03597 | | Ribosomal RNA small subunit methyltransferase I | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.21 | Psyr_2473 | | transcriptional regulator, LysR family | 0.56 | Psyr_4112 | | Protein of unknown function UPF0011 | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.21 | AO356_01560 | | LysR family transcriptional regulator | 0.57 | AO356_17110 | | methyltransferase | low | > 104 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.21 | Psyr_2473 | | transcriptional regulator, LysR family | 0.56 | Psyr_4112 | | Protein of unknown function UPF0011 | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.21 | Pf1N1B4_3992 | | Transcriptional regulator, LysR family | 0.55 | Pf1N1B4_953 | | rRNA small subunit methyltransferase I | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.21 | Pf6N2E2_2187 | | Transcriptional regulator, LysR family | 0.57 | Pf6N2E2_5346 | | rRNA small subunit methyltransferase I | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.21 | PfGW456L13_2596 | | Transcriptional regulator, LysR family | 0.54 | PfGW456L13_1643 | | rRNA small subunit methyltransferase I | 0.33 | 68 |
| Pseudomonas simiae WCS417 | 0.21 | PS417_16995 | | LysR family transcriptional regulator | 0.56 | PS417_04590 | | methyltransferase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.21 | PFLU_RS18945 | | LysR family transcriptional regulator | 0.56 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.21 | PFLU_RS18945 | | LysR family transcriptional regulator | 0.56 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.21 | AO353_20375 | | LysR family transcriptional regulator | 0.56 | AO353_15290 | | methyltransferase | low | > 101 |
| Shewanella oneidensis MR-1 | 0.20 | SO1607 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.59 | SO0301 | | hypothetical methyltransferase (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.20 | MIT1002_01758 | | HTH-type transcriptional regulator LeuO | 0.48 | MIT1002_03113 | | Ribosomal RNA small subunit methyltransferase I | low | > 70 |
| Marinobacter adhaerens HP15 | 0.20 | HP15_1665 | | transcriptional regulator, LysR family | 0.54 | HP15_554 | | tetrapyrrole methylase family protein | low | > 73 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.20 | GFF4425 | | Transcriptional regulator, LysR family | 0.33 | GFF2715 | | rRNA small subunit methyltransferase I | low | > 90 |
| Ralstonia solanacearum PSI07 | 0.20 | RPSI07_RS14540 | | LysR family transcriptional regulator | 0.34 | RPSI07_RS08730 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.20 | RS_RS10140 | | LysR family transcriptional regulator | 0.34 | RS_RS16360 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 80 |
| Variovorax sp. SCN45 | 0.20 | GFF4989 | | Transcriptional regulator, LysR family | 0.37 | GFF3735 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) | low | > 127 |
| Pseudomonas sp. S08-1 | 0.20 | OH686_00880 | | Transcriptional regulator, LysR family | 0.55 | OH686_08340 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.20 | ABZR87_RS14695 | | LysR family transcriptional regulator | 0.34 | ABZR87_RS03815 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.32 | 73 |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS30005 | | LysR family transcriptional regulator | 0.39 | RR42_RS19740 | | 16S rRNA methyltransferase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.20 | HSERO_RS24025 | | LysR family transcriptional regulator | 0.47 | HSERO_RS23345 | | 16S rRNA methyltransferase | — | — |
| Agrobacterium fabrum C58 | 0.19 | Atu5084 | | LysR family transcriptional regulator | 0.37 | Atu0302 | | tetrapyrrole methylase family protein | low | > 89 |
| Ralstonia solanacearum IBSBF1503 | 0.19 | RALBFv3_RS02770 | | LysR family transcriptional regulator | 0.35 | RALBFv3_RS08495 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.19 | UW163_RS10955 | | LysR family transcriptional regulator | 0.35 | UW163_RS05115 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.19 | QEN71_RS33090 | | LysR family transcriptional regulator | 0.41 | QEN71_RS00655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.19 | H281DRAFT_03847 | | transcriptional regulator, LysR family | 0.38 | H281DRAFT_02152 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | low | > 103 |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS05450 | | LysR family transcriptional regulator | 0.39 | ABIE40_RS01370 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 107 |
| Shewanella loihica PV-4 | 0.19 | Shew_2857 | | LysR family transcriptional regulator (RefSeq) | 0.63 | Shew_0228 | | uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) | low | > 60 |
| Sinorhizobium meliloti 1021 | 0.19 | SMa0307 | | LysR family transcriptional regulator | 0.40 | SMc00416 | | hypothetical protein | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.19 | Ac3H11_4841 | | FIG000557: hypothetical protein co-occurring with RecR | 0.36 | Ac3H11_4466 | | rRNA small subunit methyltransferase I | — | — |
| Paraburkholderia graminis OAS925 | 0.18 | ABIE53_004542 | | DNA-binding transcriptional LysR family regulator | 0.36 | ABIE53_000470 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | low | > 113 |
| Azospirillum sp. SherDot2 | 0.18 | MPMX19_03531 | | PCP degradation transcriptional activation protein | 0.34 | MPMX19_02471 | | Ribosomal RNA small subunit methyltransferase I | low | > 112 |
| Bosea sp. OAE506 | 0.18 | ABIE41_RS06780 | | LysR family transcriptional regulator | 0.36 | ABIE41_RS03315 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 77 |
| Burkholderia phytofirmans PsJN | 0.18 | BPHYT_RS30310 | | LysR family transcriptional regulator | 0.39 | BPHYT_RS01940 | | 16S rRNA methyltransferase | — | — |
| Shewanella amazonensis SB2B | 0.17 | Sama_2520 | | putative transcriptional regulator (RefSeq) | 0.62 | Sama_3353 | | hypothetical protein (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.17 | IAI47_19555 | | LysR family transcriptional regulator | 0.77 | IAI47_02850 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 76 |
| Azospirillum brasilense Sp245 | 0.17 | AZOBR_RS27530 | | LysR family transcriptional regulator | 0.33 | AZOBR_RS02155 | | 16S rRNA methyltransferase | low | > 97 |
| Dickeya dadantii 3937 | 0.15 | DDA3937_RS21355 | | LysR family transcriptional regulator | 0.79 | DDA3937_RS01715 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.15 | MPMX26_02320 | | HTH-type transcriptional regulator SyrM 1 | 0.47 | MPMX26_02282 | | Ribosomal RNA small subunit methyltransferase I | low | > 36 |
| Kangiella aquimarina DSM 16071 | 0.14 | B158DRAFT_1234 | | Transcriptional regulator | 0.48 | B158DRAFT_2109 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | low | > 40 |
| Castellaniella sp019104865 MT123 | 0.14 | ABCV34_RS11570 | | LysR family transcriptional regulator | 0.40 | ABCV34_RS14320 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 48 |
| Caulobacter crescentus NA1000 | 0.14 | CCNA_02227 | | LysR-family transcriptional regulator | 0.33 | CCNA_00143 | | ribosomal RNA small subunit methyltransferase I | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.14 | CCNA_02227 | | LysR-family transcriptional regulator | 0.33 | CCNA_00143 | | ribosomal RNA small subunit methyltransferase I | low | > 67 |
| Pectobacterium carotovorum WPP14 | 0.13 | HER17_RS04190 | | LysR family transcriptional regulator | 0.81 | HER17_RS19860 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 75 |
| Rhodopseudomonas palustris CGA009 | 0.12 | TX73_009285 | | LysR family transcriptional regulator | 0.35 | TX73_001680 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.11 | ABZR86_RS07360 | | LysR family transcriptional regulator | 0.48 | ABZR86_RS11380 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 74 |
| Dinoroseobacter shibae DFL-12 | 0.09 | Dshi_2347 | | transcriptional regulator, LysR family (RefSeq) | 0.36 | Dshi_2831 | | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq) | low | > 64 |
Not shown: 0 genomes with orthologs for ECD_00078 only; 19 genomes with orthologs for ECD_03013 only