Conservation of cofitness between ECD_01164 and ECD_02550 in Escherichia coli BL21

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01164 D-amino acid dehydrogenase 1.0 ECD_02550 nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase 0.76 18
Escherichia fergusonii Becca 1.00 EFB2_02743 D-amino acid dehydrogenase 0.99 EFB2_01224 Nicotinamide-nucleotide amidohydrolase PncC low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS07185 D-amino acid dehydrogenase 1.00 ECOLIN_RS15065 nicotinamide-nucleotide amidase — —
Escherichia coli ECRC101 1.00 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.99 OKFHMN_20700 pncC nicotinamide-nucleotide amidase — —
Escherichia coli ECOR27 1.00 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.99 NOLOHH_12540 pncC nicotinamide-nucleotide amidase low > 57
Escherichia coli ECRC101 1.00 MCAODC_21880 dadA D-amino acid dehydrogenase 0.99 MCAODC_11225 pncC nicotinamide-nucleotide amidase — —
Escherichia coli ECRC62 1.00 BNILDI_18890 dadA D-amino acid dehydrogenase 1.00 BNILDI_11100 pncC nicotinamide-nucleotide amidase — —
Escherichia coli ECRC98 1.00 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.99 JDDGAC_24365 pncC nicotinamide-nucleotide amidase — —
Escherichia coli ECRC99 1.00 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.99 KEDOAH_07435 pncC nicotinamide-nucleotide amidase — —
Escherichia coli ECOR38 1.00 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.99 HEPCGN_19895 pncC nicotinamide-nucleotide amidase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02500 D-amino acid dehydrogenase 1.00 OHPLBJKB_01034 Nicotinamide-nucleotide amidohydrolase PncC low > 73
Escherichia coli ECRC102 1.00 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.99 NIAGMN_18470 pncC nicotinamide-nucleotide amidase — —
Escherichia coli BW25113 1.00 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 1.00 b2700 ygaD competence damage-inducible protein A (NCBI) low > 76
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.90 EX28DRAFT_2786 amidohydrolase, PncC family low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.94 GFF4694 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 78
Enterobacter sp. TBS_079 0.90 MPMX20_02699 D-amino acid dehydrogenase 0.91 MPMX20_03581 Nicotinamide-nucleotide amidohydrolase PncC low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.90 BWI76_RS22185 hypothetical protein low > 92
Serratia liquefaciens MT49 0.82 IAI46_14460 D-amino acid dehydrogenase 0.62 IAI46_03835 nicotinamide-nucleotide amidase low > 86
Pantoea sp. MT58 0.80 IAI47_08890 D-amino acid dehydrogenase 0.69 IAI47_04295 nicotinamide-nucleotide amidase low > 76
Rahnella sp. WP5 0.79 EX31_RS10485 D-amino acid dehydrogenase 0.63 EX31_RS07805 nicotinamide-nucleotide amidase low > 89
Pectobacterium carotovorum WPP14 0.73 HER17_RS11170 D-amino acid dehydrogenase 0.61 HER17_RS05040 nicotinamide-nucleotide amidase low > 75
Erwinia tracheiphila SCR3 0.72 LU632_RS13070 D-amino acid dehydrogenase 0.66 LU632_RS15740 pncC nicotinamide-nucleotide amidase low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS11195 D-amino acid dehydrogenase 0.61 HGI48_RS16360 nicotinamide-nucleotide amidase low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS11540 D-amino acid dehydrogenase 0.61 DZA65_RS17455 nicotinamide-nucleotide amidase low > 75
Dickeya dadantii 3937 0.71 DDA3937_RS11170 D-amino acid dehydrogenase 0.60 DDA3937_RS16250 nicotinamide-nucleotide amidase 0.52 8
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_04287 D-amino-acid dehydrogenase 0.45 H281DRAFT_06305 nicotinamide-nucleotide amidase low > 103
Paraburkholderia graminis OAS925 0.71 ABIE53_003133 D-amino-acid dehydrogenase 0.45 ABIE53_003546 nicotinamide-nucleotide amidase low > 113
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS14790 D-amino acid dehydrogenase 0.47 BPHYT_RS16895 competence damage-inducible protein A low > 109
Paraburkholderia sabiae LMG 24235 0.70 QEN71_RS04190 D-amino acid dehydrogenase 0.48 QEN71_RS27055 CinA family protein low > 153
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS08375 D-amino acid dehydrogenase small subunit 0.42 HSERO_RS16840 competence damage-inducible protein A low > 78
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS13870 D-amino acid dehydrogenase small subunit 0.46 RALBFv3_RS05915 CinA family protein 0.38 60
Ralstonia solanacearum UW163 0.68 UW163_RS15940 D-amino acid dehydrogenase small subunit 0.46 UW163_RS07710 CinA family protein — —
Ralstonia solanacearum GMI1000 0.67 RS_RS04605 D-amino acid dehydrogenase small subunit 0.46 RS_RS13860 CinA family protein — —
Ralstonia solanacearum PSI07 0.67 RPSI07_RS19600 D-amino acid dehydrogenase small subunit 0.46 RPSI07_RS11330 CinA family protein — —
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS09560 D-amino acid dehydrogenase 0.46 ABZR87_RS01580 CinA family protein low > 80
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS04585 amino acid dehydrogenase 0.46 RR42_RS17625 damage-inducible protein CinA low > 128
Pseudomonas putida KT2440 0.62 PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) 0.43 PP_1628 NMN amidohydrolase low > 96
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.43 Pf1N1B4_3142 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 87
Pseudomonas sp. S08-1 0.62 OH686_13685 D-amino acid dehydrogenase 0.43 OH686_18200 Nicotinamide-nucleotide amidase low > 80
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_09155 amino acid dehydrogenase 0.44 AO353_16800 damage-inducible protein CinA low > 101
Pseudomonas fluorescens SBW25 0.61 PFLU_RS29380 D-amino acid dehydrogenase 0.43 PFLU_RS05880 CinA family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS29380 D-amino acid dehydrogenase 0.43 PFLU_RS05880 CinA family protein low > 109
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.45 Psyr_1377 CinA, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.45 Psyr_1377 CinA, C-terminal low > 86
Pseudomonas stutzeri RCH2 0.61 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.45 Psest_2873 competence/damage-inducible protein CinA C-terminal domain low > 67
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.41 PfGW456L13_4669 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 87
Pseudomonas simiae WCS417 0.61 PS417_27705 amino acid dehydrogenase 0.45 PS417_05810 damage-inducible protein CinA low > 88
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.43 Pf6N2E2_2994 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 103
Rhodanobacter denitrificans MT42 0.61 LRK55_RS00360 D-amino acid dehydrogenase 0.44 LRK55_RS14690 CinA family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS00590 D-amino acid dehydrogenase 0.44 LRK54_RS14975 CinA family protein low > 59
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_12620 amino acid dehydrogenase 0.43 AO356_05675 damage-inducible protein CinA low > 104
Pseudomonas sp. RS175 0.60 PFR28_04399 D-amino acid dehydrogenase 1 0.43 PFR28_00471 Nicotinamide-nucleotide amidohydrolase PncC low > 88
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.45 OKGIIK_03735 pncC damage-inducible protein CinA low > 52
Variovorax sp. SCN45 0.60 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) 0.43 GFF6273 Nicotinamide-nucleotide amidase (EC 3.5.1.42) low > 127
Castellaniella sp019104865 MT123 0.59 ABCV34_RS10810 D-amino acid dehydrogenase 0.41 ABCV34_RS10110 CinA family protein low > 48
Agrobacterium fabrum C58 0.56 Atu3293 D-amino acid dehydrogenase small subunit 0.38 Atu1442 competence/damage-inducible protein CinA low > 89
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.51 Xcc-8004.3118.1 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 74
Azospirillum sp. SherDot2 0.54 MPMX19_06097 D-amino acid dehydrogenase 1 0.40 MPMX19_01107 Nicotinamide-nucleotide amidohydrolase PncC low > 112
Azospirillum brasilense Sp245 0.54 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.43 AZOBR_RS14405 competence damage-inducible protein A low > 97
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_04065 D-amino acid dehydrogenase small subunit 0.50 CSW01_02870 CinA family protein low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS08770 D-amino acid dehydrogenase 0.43 A4249_RS04795 CinA family protein low > 48
Dechlorosoma suillum PS 0.40 Dsui_0501 glycine/D-amino acid oxidase, deaminating 0.45 Dsui_0710 competence/damage-inducible protein CinA-like protein — —
Magnetospirillum magneticum AMB-1 0.38 AMB_RS14080 D-amino-acid dehydrogenase 0.45 AMB_RS12830 CinA family protein — —
Marinobacter adhaerens HP15 0.38 HP15_2610 D-amino acid dehydrogenase small subunit 0.53 HP15_1046 competence damage-inducible protein A low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1973 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.49 GFF3091 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 90
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4848 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.42 Ac3H11_738 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 79
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3351 Glycine/D-amino acid oxidases (deaminating) 0.35 Ga0059261_1920 amidohydrolase, PncC family low > 68
Dyella japonica UNC79MFTsu3.2 0.17 ABZR86_RS08930 FAD-dependent oxidoreductase 0.45 ABZR86_RS00655 CinA family protein — —
Sinorhizobium meliloti 1021 0.15 SMc03265 amino acid dehydrogenase transmembrane protein 0.40 SMc01039 hypothetical protein low > 103
Phaeobacter inhibens DSM 17395 0.13 PGA1_c05140 D-amino acid dehydrogenase small subunit 0.37 PGA1_c14740 competence/damage-inducible protein CinA C-terminal domain low > 62
Bosea sp. OAE506 0.13 ABIE41_RS05730 FAD-dependent oxidoreductase 0.36 ABIE41_RS16805 CinA family protein low > 77
Rhizobium sp. OAE497 0.12 ABIE40_RS03380 FAD-binding oxidoreductase 0.41 ABIE40_RS09070 CinA family protein low > 107

Not shown: 9 genomes with orthologs for ECD_01164 only; 11 genomes with orthologs for ECD_02550 only