Conservation of cofitness between DDA3937_RS05430 and DDA3937_RS19135 in Dickeya dadantii 3937

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dadantii 3937 1.0 DDA3937_RS05430 phosphate regulon sensor histidine kinase PhoR 1.0 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.43 7
Dickeya dianthicola 67-19 0.99 HGI48_RS05490 phosphate regulon sensor histidine kinase PhoR 0.96 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Dickeya dianthicola ME23 0.98 DZA65_RS05815 phosphate regulon sensor histidine kinase PhoR 0.96 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Pectobacterium carotovorum WPP14 0.87 HER17_RS16035 phosphate regulon sensor histidine kinase PhoR 0.75 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Serratia liquefaciens MT49 0.82 IAI46_04780 phosphate regulon sensor histidine kinase PhoR 0.76 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Rahnella sp. WP5 0.75 EX31_RS22045 phosphate regulon sensor histidine kinase PhoR 0.76 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF4297 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) 0.71 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Klebsiella michiganensis M5al 0.74 BWI76_RS06235 PAS domain-containing sensor histidine kinase 0.73 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_03276 Phosphate regulon sensor protein PhoR 0.74 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia coli ECRC62 0.73 BNILDI_22885 phoR phosphate regulon sensor histidine kinase PhoR 0.74 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli ECOR27 0.73 NOLOHH_01470 phoR phosphate regulon sensor histidine kinase PhoR 0.74 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli BL21 0.73 ECD_00348 sensory histidine kinase in two-component regulatory system with PhoB 0.74 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 0.72 b0400 phoR sensory histidine kinase in two-component regulatory system with PhoB (NCBI) 0.74 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.32 34
Escherichia coli Nissle 1917 0.72 ECOLIN_RS02415 phosphate regulon sensor histidine kinase PhoR 0.73 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 55
Escherichia fergusonii Becca 0.72 EFB2_03657 Phosphate regulon sensor protein PhoR 0.73 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli ECRC102 0.72 NIAGMN_06595 phoR phosphate regulon sensor histidine kinase PhoR 0.74 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Enterobacter sp. TBS_079 0.72 MPMX20_00987 Phosphate regulon sensor protein PhoR 0.72 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Escherichia coli ECRC99 0.72 KEDOAH_19425 phoR phosphate regulon sensor histidine kinase PhoR 0.74 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC100 0.72 OKFHMN_08540 phoR phosphate regulon sensor histidine kinase PhoR 0.74 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Escherichia coli ECRC101 0.72 MCAODC_27765 phoR phosphate regulon sensor histidine kinase PhoR 0.74 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECOR38 0.72 HEPCGN_07180 phoR phosphate regulon sensor histidine kinase PhoR 0.74 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC98 0.72 JDDGAC_12195 phoR phosphate regulon sensor histidine kinase PhoR 0.74 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2574 phosphate regulon sensor kinase PhoR 0.73 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Pantoea sp. MT58 0.68 IAI47_14850 phosphate regulon sensor histidine kinase PhoR 0.67 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Erwinia tracheiphila SCR3 0.64 LU632_RS18920 phoR phosphate regulon sensor histidine kinase PhoR 0.70 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_03765 two-component system sensor histidine kinase PhoR 0.57 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Shewanella sp. ANA-3 0.48 Shewana3_2878 PAS/PAC sensor signal transduction histidine kinase (RefSeq) 0.45 Shewana3_0033 sun protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO1559 phoR phosphate regulon sensor protein PhoR (NCBI ptt file) 0.45 SO0030 sun sun protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.48 Shew_2748 PAS/PAC sensor signal transduction histidine kinase (RefSeq) 0.46 Shew_3738 sun protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.47 Sama_1075 phosphate regulon sensor protein PhoR (RefSeq) 0.46 Sama_0041 sun protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.45 MIT1002_00752 Phosphate regulon sensor protein PhoR 0.42 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_0896 phosphate regulon sensor kinase PhoR 0.36 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40
Dechlorosoma suillum PS 0.33 Dsui_0864 phosphate regulon sensor kinase PhoR 0.35 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB low > 51
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_4067 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) 0.41 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_11005 histidine kinase 0.41 AO356_11275 16S rRNA methyltransferase low > 104
Pseudomonas sp. S08-1 0.32 OH686_13460 phosphate regulon sensor kinase PhoR 0.40 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Pseudomonas simiae WCS417 0.32 PS417_28040 histidine kinase 0.39 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_09860 histidine kinase 0.41 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS29730 phosphate regulon sensor histidine kinase PhoR 0.40 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas sp. RS175 0.32 PFR28_04480 Phosphate regulon sensor protein PhoR 0.41 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Pseudomonas fluorescens SBW25 0.32 PFLU_RS29730 phosphate regulon sensor histidine kinase PhoR 0.40 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas putida KT2440 0.32 PP_5321 two-component system sensory histidine kinase 0.42 PP_0066 Ribosomal RNA small subunit methyltransferase B low > 96
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS06340 histidine kinase 0.28 HSERO_RS00355 methyltransferase low > 78
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_5033 PAS/PAC sensor signal transduction histidine kinase 0.40 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_5033 PAS/PAC sensor signal transduction histidine kinase 0.40 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas stutzeri RCH2 0.31 Psest_3846 phosphate regulon sensor kinase PhoR 0.43 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB low > 67
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_2043 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) 0.40 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_761 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) 0.40 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS02120 phosphate regulon sensor histidine kinase PhoR 0.30 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Ralstonia solanacearum UW163 0.30 UW163_RS15430 phosphate regulon sensor histidine kinase PhoR 0.30 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Marinobacter adhaerens HP15 0.30 HP15_3355 multi-sensor signal transduction histidine kinase 0.39 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase low > 73
Lysobacter sp. OAE881 0.30 ABIE51_RS14225 phosphate regulon sensor histidine kinase PhoR 0.35 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Ralstonia solanacearum PSI07 0.30 RPSI07_RS15325 phosphate regulon sensor histidine kinase PhoR 0.32 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Castellaniella sp019104865 MT123 0.30 ABCV34_RS14465 phosphate regulon sensor histidine kinase PhoR 0.29 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Ralstonia solanacearum GMI1000 0.30 RS_RS07700 phosphate regulon sensor histidine kinase PhoR 0.31 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Paraburkholderia graminis OAS925 0.30 ABIE53_002989 two-component system phosphate regulon sensor histidine kinase PhoR 0.31 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS04850 phosphate regulon sensor histidine kinase PhoR 0.33 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS13440 histidine kinase 0.28 RR42_RS20450 16S rRNA methyltransferase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_04417 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR 0.32 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase low > 103
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS14115 sensor histidine kinase 0.31 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Acidovorax sp. GW101-3H11 0.29 Ac3H11_462 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) 0.29 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 79
Acinetobacter radioresistens SK82 0.29 MPMX26_02959 Phosphate regulon sensor protein PhoR 0.33 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B low > 36
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS00715 phosphate regulon sensor histidine kinase PhoR 0.33 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS14070 phosphate regulon sensor histidine kinase PhoR 0.31 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF4236 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) 0.31 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 90
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.4063.1 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) 0.33 Xcc-8004.4741.1 hypothetical protein low > 74
Rhodospirillum rubrum S1H 0.18 Rru_A3543 Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI) 0.20 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) — —

Not shown: 2 genomes with orthologs for DDA3937_RS05430 only; 21 genomes with orthologs for DDA3937_RS19135 only