| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_05825 | | transcriptional regulator HexR | 1.0 | CSW01_11205 | | flagellar basal-body rod protein FlgF | 0.77 | 15 |
| Shewanella loihica PV-4 | 0.78 | Shew_2049 | | DNA-binding transcriptional regulator HexR (RefSeq) | 0.60 | Shew_1349 | flgF | flagellar basal body rod protein FlgF (RefSeq) | low | > 60 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_14580 | | MurR/RpiR family transcriptional regulator | 0.34 | IAI46_15940 | | flagellar basal body rod protein FlgF | low | > 87 |
| Shewanella sp. ANA-3 | 0.77 | Shewana3_2152 | | DNA-binding transcriptional regulator HexR (RefSeq) | 0.56 | Shewana3_1325 | flgF | flagellar basal body rod protein FlgF (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.77 | SO2490 | | transcriptional regulator, RpiR family (NCBI ptt file) | 0.57 | SO3245 | flgF | flagellar basal-body rod protein FlgF (NCBI ptt file) | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.77 | HER17_RS11785 | | MurR/RpiR family transcriptional regulator | 0.32 | HER17_RS08185 | | flagellar basal body rod protein FlgF | low | > 75 |
| Shewanella amazonensis SB2B | 0.77 | Sama_1813 | | DNA-binding transcriptional regulator HexR (RefSeq) | 0.57 | Sama_2314 | flgF | flagellar basal body rod protein FlgF (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.76 | EX31_RS10635 | | MurR/RpiR family transcriptional regulator | 0.31 | EX31_RS11295 | | flagellar basal body rod protein FlgF | low | > 89 |
| Dickeya dianthicola 67-19 | 0.75 | HGI48_RS10160 | | MurR/RpiR family transcriptional regulator | 0.30 | HGI48_RS13505 | | flagellar basal body rod protein FlgF | low | > 71 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS10575 | | MurR/RpiR family transcriptional regulator | 0.30 | DZA65_RS13990 | | flagellar basal body rod protein FlgF | low | > 75 |
| Dickeya dadantii 3937 | 0.75 | DDA3937_RS10130 | | MurR/RpiR family transcriptional regulator | 0.30 | DDA3937_RS13460 | | flagellar basal body rod protein FlgF | low | > 74 |
| Enterobacter asburiae PDN3 | 0.74 | EX28DRAFT_0703 | | transcriptional regulator, RpiR family | 0.35 | EX28DRAFT_1855 | | flagellar hook-basal body protein | low | > 76 |
| Enterobacter sp. TBS_079 | 0.74 | MPMX20_02758 | | HTH-type transcriptional regulator HexR | 0.35 | MPMX20_01756 | | Flagellar basal-body rod protein FlgF | low | > 85 |
| Escherichia coli ECRC100 | 0.73 | OKFHMN_26325 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | OKFHMN_03655 | flgF | flagellar basal-body rod protein FlgF | low | > 79 |
| Escherichia coli ECRC102 | 0.73 | NIAGMN_01735 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | NIAGMN_24175 | flgF | flagellar basal-body rod protein FlgF | low | > 80 |
| Escherichia coli ECRC98 | 0.73 | JDDGAC_00900 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | JDDGAC_07315 | flgF | flagellar basal-body rod protein FlgF | low | > 87 |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_16840 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | NOLOHH_21185 | flgF | flagellar basal-body rod protein FlgF | low | > 76 |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_04730 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | HEPCGN_23835 | flgF | flagellar basal-body rod protein FlgF | low | > 88 |
| Escherichia coli ECRC62 | 0.73 | BNILDI_15635 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | BNILDI_19345 | flgF | flagellar basal-body rod protein FlgF | low | > 75 |
| Escherichia coli ECRC99 | 0.73 | KEDOAH_01780 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | KEDOAH_24100 | flgF | flagellar basal-body rod protein FlgF | — | — |
| Escherichia fergusonii Becca | 0.73 | EFB2_02089 | | HTH-type transcriptional regulator HexR | 0.34 | EFB2_02897 | | Flagellar basal-body rod protein FlgF | low | > 86 |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS10325 | | DNA-binding transcriptional regulator HexR | 0.34 | ECOLIN_RS06235 | | flagellar basal-body rod protein FlgF | low | > 55 |
| Escherichia coli ECRC101 | 0.73 | MCAODC_19080 | hexR | DNA-binding transcriptional regulator HexR | 0.34 | MCAODC_23015 | flgF | flagellar basal-body rod protein FlgF | low | > 87 |
| Escherichia coli BW25113 | 0.73 | b1853 | yebK | predicted DNA-binding transcriptional regulator (NCBI) | 0.34 | b1077 | flgF | flagellar component of cell-proximal portion of basal-body rod (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.73 | ECD_01824 | | putative DNA-binding transcriptional regulator | 0.34 | ECD_01073 | | flagellar component of cell-proximal portion of basal-body rod | — | — |
| Alteromonas macleodii MIT1002 | 0.73 | MIT1002_02408 | | putative HTH-type transcriptional regulator YbbH | 0.51 | MIT1002_01043 | | Putative proximal rod protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.72 | GFF1632 | | Phosphogluconate repressor HexR, RpiR family | 0.33 | GFF3358 | | Flagellar basal-body rod protein FlgF | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS13365 | | MurR/RpiR family transcriptional regulator | 0.29 | LU632_RS10415 | | flagellar basal body rod protein FlgF | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.64 | IJEDHG_22185 | | transcriptional regulator HexR | 0.29 | IJEDHG_21065 | flgF | flagellar biosynthesis protein FlgF | low | > 61 |
| Pantoea sp. MT58 | 0.63 | IAI47_08490 | | MurR/RpiR family transcriptional regulator | 0.32 | IAI47_12145 | | flagellar basal body rod protein FlgF | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.61 | PagCFBP13505_RS02370 | | transcriptional regulator HexR | 0.32 | PagCFBP13505_RS05190 | | flagellar basal body rod protein FlgF | low | > 74 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_02440 | | Phosphogluconate repressor HexR, RpiR family | 0.46 | OH686_02955 | | Flagellar basal-body rod protein FlgF | low | > 80 |
| Pseudomonas sp. SVBP6 | 0.58 | COO64_RS04585 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | COO64_RS21375 | | flagellar basal body rod protein FlgF | low | > 93 |
| Pseudomonas sp. DMC3 | 0.58 | GFF5141 | | HTH-type transcriptional regulator HexR | 0.45 | GFF2416 | | Flagellar basal-body rod protein FlgF | low | > 89 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00572 | | HTH-type transcriptional regulator HexR | 0.45 | PFR28_00804 | | Flagellar basal-body rod protein FlgF | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.57 | Pf6N2E2_2886 | | Phosphogluconate repressor HexR, RpiR family | 0.45 | Pf6N2E2_2628 | | Flagellar basal-body rod protein FlgF | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.57 | PfGW456L13_1900 | | Phosphogluconate repressor HexR, RpiR family | 0.46 | PfGW456L13_4387 | | Flagellar basal-body rod protein FlgF | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_05165 | | transcriptional regulator | 0.44 | AO356_03930 | | flagellar biosynthesis protein FlgF | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_590 | | Phosphogluconate repressor HexR, RpiR family | 0.46 | Pf1N1B4_3568 | | Flagellar basal-body rod protein FlgF | — | — |
| Pseudomonas orientalis W4I3 | 0.57 | QF045_RS24250 | | MurR/RpiR family transcriptional regulator | 0.45 | QF045_RS22020 | | flagellar basal body rod protein FlgF | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_03365 | | transcriptional regulator | 0.45 | AO353_18595 | | flagellar biosynthesis protein FlgF | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.57 | Psest_0851 | | Transcriptional regulators | 0.47 | Psest_2964 | | flagellar basal-body rod protein FlgF | low | > 67 |
| Pseudomonas putida KT2440 | 0.57 | PP_1021 | | DNA-binding transcriptional regulator | 0.47 | PP_4386 | | flagellar basal-body rod protein FlgF | low | > 96 |
| Pseudomonas simiae WCS417 | 0.57 | PS417_22115 | | transcriptional regulator | 0.45 | PS417_19890 | | flagellar basal body rod protein FlgF | — | — |
| Pseudomonas segetis P6 | 0.57 | MPMX49_02832 | | HTH-type transcriptional regulator HexR | 0.45 | MPMX49_03163 | | Flagellar basal-body rod protein FlgF | low | > 75 |
| Pseudomonas lactucae CFBP13502 | 0.57 | GEMAOFIL_04559 | | HTH-type transcriptional regulator HexR | 0.45 | GEMAOFIL_04176 | | Flagellar basal-body rod protein FlgF | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | 0.45 | PFLU_RS21860 | | flagellar basal body rod protein FlgF | low | > 109 |
| Pseudomonas sp. BP01 | 0.57 | JOY50_RS11445 | hexR | DNA-binding transcriptional regulator HexR | 0.47 | JOY50_RS00770 | | flagellar basal body rod protein FlgF | low | > 84 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | 0.45 | PFLU_RS21860 | | flagellar basal body rod protein FlgF | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.56 | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | 0.47 | Psyr_3476 | | Flagellar basal body rod protein:Protein of unknown function DUF1078 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.56 | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | 0.47 | Psyr_3476 | | Flagellar basal body rod protein:Protein of unknown function DUF1078 | low | > 86 |
| Marinobacter adhaerens HP15 | 0.55 | HP15_2180 | | transcriptional regulator, RpiR family protein | 0.47 | HP15_1471 | | flagellar basal-body rod FlgF | low | > 73 |
| Pseudomonas aeruginosa PUPa3 | 0.55 | DQ20_RS34520 | | MurR/RpiR family transcriptional regulator | 0.47 | DQ20_RS45740 | flgF;go_function=structural | flagellar basal-body rod protein FlgF | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.55 | IKLFDK_16180 | | HTH-type transcriptional regulator HexR | 0.47 | IKLFDK_04965 | | flagellar basal-body rod protein FlgF | 0.30 | 36 |
| Pseudomonas aeruginosa MRSN321 | 0.55 | DY961_RS01015 | | MurR/RpiR family transcriptional regulator | 0.47 | DY961_RS07045 | flgF;go_function=structural | flagellar basal-body rod protein FlgF | low | > 100 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS08655 | | SIS domain-containing protein | 0.29 | ABCV34_RS05750 | | flagellar basal-body rod protein FlgF | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.38 | SMc02460 | | hypothetical protein | 0.20 | SMc03024 | | flagellar basal body rod protein FlgF | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_003518 | | RpiR family carbohydrate utilization transcriptional regulator | 0.35 | ABIE53_000097 | | flagellar basal-body rod protein FlgF | low | > 113 |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS30190 | | transcriptional regulator | 0.21 | AZOBR_RS32140 | | flagellar basal body rod protein FlgG | low | > 97 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS16740 | | transcriptional regulator | 0.38 | BPHYT_RS18875 | | flagellar basal body rod protein FlgF | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS06120 | | transcriptional regulator | 0.35 | RR42_RS35705 | | flagellar basal body rod protein FlgF | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_2055 | | Probable transcriptional regulator | 0.32 | Ac3H11_1373 | | Flagellar basal-body rod protein FlgF | low | > 79 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_05117 | | HTH-type transcriptional regulator HexR | 0.22 | MPMX19_01483 | | Flagellar basal-body rod protein FlgG | low | > 112 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_04279 | | transcriptional regulator, RpiR family | 0.38 | H281DRAFT_05766 | | flagellar basal-body rod protein FlgF | low | > 103 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF1364 | | Phosphogluconate repressor HexR, RpiR family | 0.34 | GFF4076 | | Flagellar basal-body rod protein FlgF | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.32 | HSERO_RS05505 | | transcriptional regulator | 0.40 | HSERO_RS10200 | | flagellar basal body rod protein FlgF | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.30 | QEN71_RS26925 | | MurR/RpiR family transcriptional regulator | 0.35 | QEN71_RS28900 | | flagellar basal-body rod protein FlgF | low | > 153 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS21410 | | MurR/RpiR family transcriptional regulator | 0.16 | ABIE40_RS02955 | | flagellar basal-body rod protein FlgF | low | > 107 |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS22855 | | MurR/RpiR family transcriptional regulator | 0.30 | RS_RS18815 | | flagellar basal-body rod protein FlgF | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.22 | ABZR87_RS03145 | | MurR/RpiR family transcriptional regulator | 0.27 | ABZR87_RS22270 | | flagellar basal-body rod protein FlgF | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.22 | RALBFv3_RS18180 | | MurR/RpiR family transcriptional regulator | 0.30 | RALBFv3_RS21720 | | flagellar basal-body rod protein FlgF | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.22 | RPSI07_RS05455 | | MurR/RpiR family transcriptional regulator | 0.30 | RPSI07_RS01410 | | flagellar basal-body rod protein FlgF | low | > 81 |
| Ralstonia solanacearum UW163 | 0.22 | UW163_RS20950 | | MurR/RpiR family transcriptional regulator | 0.30 | UW163_RS17465 | | flagellar basal-body rod protein FlgF | — | — |
| Variovorax sp. SCN45 | 0.20 | GFF6715 | | Transcriptional regulator of RpiR family in catabolic operon | 0.31 | GFF5719 | | Flagellar basal-body rod protein FlgF | — | — |
| Phaeobacter inhibens DSM 17395 | 0.10 | PGA1_c27130 | | putative HTH-type transcriptional regulator | 0.19 | PGA1_c35790 | | flagellar basal-body rod protein FlgF | low | > 62 |
Not shown: 5 genomes with orthologs for CSW01_05825 only; 19 genomes with orthologs for CSW01_11205 only