Conservation of cofitness between CSW01_07155 and CSW01_09605 in Vibrio cholerae E7946 ATCC 55056

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07155 spermidine/putrescine ABC transporter permease PotB 1.0 CSW01_09605 endopeptidase La 0.50 7
Pectobacterium carotovorum WPP14 0.74 HER17_RS11665 spermidine/putrescine ABC transporter permease PotB 0.84 HER17_RS15840 endopeptidase La — —
Escherichia fergusonii Becca 0.73 EFB2_02850 Spermidine/putrescine transport system permease protein PotB 0.82 EFB2_03618 Lon protease low > 86
Escherichia coli ECOR38 0.73 HEPCGN_24070 potB spermidine/putrescine ABC transporter permease PotB 0.82 HEPCGN_06935 lon_P403L Lon protease low > 88
Escherichia coli ECRC62 0.73 BNILDI_19105 potB spermidine/putrescine ABC transporter permease PotB 0.82 BNILDI_22670 lon_P403L Lon protease low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02543 Spermidine/putrescine transport system permease protein PotB 0.82 OHPLBJKB_03234 Lon protease low > 74
Escherichia coli ECOR27 0.73 NOLOHH_20940 potB spermidine/putrescine ABC transporter permease PotB 0.82 NOLOHH_01255 lon_P403L Lon protease low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3409 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) 0.82 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I low > 78
Escherichia coli BW25113 0.72 b1125 potB spermidine/putrescine ABC transporter membrane protein (NCBI) 0.82 b0439 lon DNA-binding ATP-dependent protease La (NCBI) low > 76
Escherichia coli BL21 0.72 ECD_01123 spermidine/putrescine ABC transporter permease 0.82 ECD_00391 DNA-binding ATP-dependent protease La — —
Enterobacter sp. TBS_079 0.72 MPMX20_01806 Spermidine/putrescine transport system permease protein PotB 0.83 MPMX20_01030 Lon protease low > 85
Escherichia coli ECRC102 0.72 NIAGMN_24745 potB spermidine/putrescine ABC transporter permease PotB 0.82 NIAGMN_06375 Lon protease — —
Escherichia coli ECRC101 0.72 MCAODC_22465 potB spermidine/putrescine ABC transporter permease PotB 0.82 MCAODC_27545 Lon protease low > 87
Enterobacter asburiae PDN3 0.72 EX28DRAFT_1805 ABC-type spermidine/putrescine transport system, permease component I 0.83 EX28DRAFT_2531 endopeptidase La low > 76
Escherichia coli ECRC99 0.72 KEDOAH_24705 potB spermidine/putrescine ABC transporter permease PotB 0.82 KEDOAH_19645 Lon protease — —
Escherichia coli ECRC100 0.72 OKFHMN_00620 potB spermidine/putrescine ABC transporter permease PotB 0.82 OKFHMN_08320 Lon protease low > 79
Escherichia coli ECRC98 0.72 JDDGAC_06745 potB spermidine/putrescine ABC transporter permease PotB 0.82 JDDGAC_11975 Lon protease low > 87
Klebsiella michiganensis M5al 0.70 BWI76_RS11250 spermidine/putrescine ABC transporter permease PotB 0.83 BWI76_RS06535 endopeptidase La low > 92
Klebsiella pneumoniae MKP103 0.70 KDGMDA_18855 spermidine/putrescine ABC transporter permease PotB 0.83 KDGMDA_14620 Lon protease low > 95
Marinobacter adhaerens HP15 0.56 HP15_4063 spermidine/putrescine ABC transporter, permease protein PotB 0.67 HP15_2183 DNA-binding ATP-dependent protease La low > 73
Desulfovibrio vulgaris Miyazaki F 0.50 DvMF_1959 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.54 DvMF_0112 ATP-dependent protease La (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.48 DVU0097 potB polyamine ABC transporter, permease protein (TIGR) 0.54 DVU1337 lon ATP-dependent protease La (TIGR) low > 55
Pseudomonas aeruginosa MRSN321 0.37 DY961_RS14940 ABC transporter permease 0.70 DY961_RS20740 lon;go_function=ATP-dependent endopeptidase La low > 100
Pseudomonas aeruginosa PUPa3 0.37 DQ20_RS42190 ABC transporter permease 0.70 DQ20_RS54820 lon;go_function=ATP-dependent endopeptidase La low > 101
Pseudomonas aeruginosa PA14 0.37 IKLFDK_18420 polyamine transport protein PotB 0.70 IKLFDK_08760 endopeptidase La low > 98
Magnetospirillum magneticum AMB-1 0.36 AMB_RS13200 putrescine ABC transporter permease PotH 0.66 AMB_RS14035 endopeptidase La low > 64
Caulobacter crescentus NA1000 0.36 CCNA_03238 ABC-type spermidine/putrescine transport system, permease component II 0.62 CCNA_02037 ATP-dependent endopeptidase Lon low > 66
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_03238 ABC-type spermidine/putrescine transport system, permease component II 0.62 CCNA_02037 ATP-dependent endopeptidase Lon — —
Pseudomonas segetis P6 0.36 MPMX49_03970 hypothetical protein 0.69 MPMX49_02263 Lon protease low > 75
Shewanella oneidensis MR-1 0.36 SO1272 polyamine ABC transporter, permease protein (NCBI ptt file) 0.82 SO1796 lon ATP-dependent protease La (NCBI ptt file) low > 76
Bosea sp. OAE506 0.35 ABIE41_RS21640 ABC transporter permease subunit 0.61 ABIE41_RS18050 endopeptidase La — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_25425 ABC transporter permease 0.68 AO353_20185 DNA-binding protein low > 101
Azospirillum sp. SherDot2 0.35 MPMX19_04881 Putrescine transport system permease protein PotH 0.66 MPMX19_01545 Lon protease low > 112
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_1568 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) 0.69 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I low > 87
Shewanella sp. ANA-3 0.34 Shewana3_3095 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.82 Shewana3_2659 Lon-A peptidase (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS12955 ABC transporter permease subunit 0.68 QEN71_RS21975 endopeptidase La low > 153
Rhodospirillum rubrum S1H 0.34 Rru_A1016 Binding-protein-dependent transport systems inner membrane component (NCBI) 0.65 Rru_A1552 Peptidase S16, ATP-dependent protease La (NCBI) low > 58
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS23140 putrescine/spermidine ABC transporter permease 0.68 BPHYT_RS09460 peptidase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4862 Binding-protein-dependent transport systems inner membrane component 0.68 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 low > 86
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4862 Binding-protein-dependent transport systems inner membrane component 0.68 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 low > 86
Dickeya dianthicola 67-19 0.34 HGI48_RS09490 putrescine ABC transporter permease PotH 0.83 HGI48_RS05695 endopeptidase La low > 71
Dickeya dianthicola ME23 0.34 DZA65_RS09800 putrescine ABC transporter permease PotH 0.83 DZA65_RS06020 endopeptidase La low > 75
Pantoea agglomerans CFBP13505 P0401 0.33 PagCFBP13505_RS04295 putrescine ABC transporter permease PotH 0.83 PagCFBP13505_RS10550 endopeptidase La — —
Dickeya dadantii 3937 0.33 DDA3937_RS09470 putrescine ABC transporter permease PotH 0.84 DDA3937_RS05650 endopeptidase La low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2033 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) 0.66 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I low > 90
Castellaniella sp019104865 MT123 0.33 ABCV34_RS02370 ABC transporter permease subunit 0.67 ABCV34_RS05125 endopeptidase La — —
Serratia liquefaciens MT49 0.33 IAI46_08380 putrescine ABC transporter permease PotH 0.83 IAI46_05020 endopeptidase La low > 87
Pantoea sp. MT58 0.33 IAI47_13035 putrescine ABC transporter permease PotH 0.83 IAI47_14645 endopeptidase La — —
Pseudomonas sp. S08-1 0.33 OH686_11315 Spermidine/putrescine import ABC transporter permease protein PotB 0.68 OH686_03635 endopeptidase La low > 80
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05182 putrescine transport system permease protein 0.67 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 — —
Pseudomonas sp. DMC3 0.33 GFF284 Putrescine transport system permease protein PotH 0.68 GFF1445 Lon protease low > 89
Pseudomonas orientalis W4I3 0.33 QF045_RS01485 ABC transporter permease subunit 0.69 QF045_RS18890 endopeptidase La low > 93
Escherichia coli Nissle 1917 0.33 ECOLIN_RS04560 putrescine ABC transporter permease PotH 0.82 ECOLIN_RS02635 endopeptidase La low > 55
Rahnella sp. WP5 0.33 EX31_RS09620 putrescine ABC transporter permease PotH 0.82 EX31_RS22255 endopeptidase La low > 89
Paraburkholderia graminis OAS925 0.33 ABIE53_002368 putrescine transport system permease protein 0.66 ABIE53_002117 ATP-dependent Lon protease low > 113
Pseudomonas fluorescens SBW25 0.32 PFLU_RS28760 ABC transporter permease subunit 0.68 PFLU_RS19160 endopeptidase La low > 109
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2262 Lysine ABC transporter, permease component (from data) 0.68 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I — —
Pseudomonas lactucae CFBP13502 0.32 GEMAOFIL_05562 Putrescine transport system permease protein PotH 0.69 GEMAOFIL_03741 Lon protease low > 96
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS28760 ABC transporter permease subunit 0.68 PFLU_RS19160 endopeptidase La low > 109
Pseudomonas simiae WCS417 0.32 PS417_27110 spermidine/putrescine ABC transporter permease 0.68 PS417_17225 DNA-binding protein — —
Fusobacterium nucleatum SB010 0.32 HUW76_00745 ABC transporter permease 0.43 HUW76_01065 endopeptidase La low > 35
Shewanella loihica PV-4 0.32 Shew_0975 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.83 Shew_2506 ATP-dependent protease La (RefSeq) — —
Pseudomonas sp. RS175 0.32 PFR28_04292 Putrescine transport system permease protein PotH 0.68 PFR28_01230 Lon protease low > 88
Agrobacterium fabrum C58 0.32 Atu0611 ABC transporter, membrane spanning protein 0.62 Atu1261 ATP-dependent protease LA — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13170 spermidine/putrescine ABC transporter permease 0.68 AO356_01740 DNA-binding protein low > 104
Pseudomonas sp. SVBP6 0.32 COO64_RS00875 ABC transporter permease subunit 0.67 COO64_RS19205 lon endopeptidase La low > 93
Erwinia amylovora T8 0.32 OLJFJH_16300 putrescine ABC transporter permease PotH 0.83 OLJFJH_17960 endopeptidase La low > 58
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4516 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) 0.68 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I — —
Azospirillum brasilense Sp245 0.32 AZOBR_RS08835 putrescine/spermidine ABC transporter permease 0.66 AZOBR_RS07145 peptidase low > 97
Shewanella amazonensis SB2B 0.32 Sama_2640 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.81 Sama_1226 endopeptidase La (RefSeq) low > 62
Dinoroseobacter shibae DFL-12 0.32 Dshi_1599 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.60 Dshi_1777 ATP-dependent protease La (RefSeq) low > 64
Pseudomonas sp. BP01 0.31 JOY50_RS22335 ABC transporter permease subunit 0.67 JOY50_RS25905 lon endopeptidase La low > 84
Pseudomonas putida KT2440 0.31 PP_5178 spermidine/putrescine ABC transporter - inner membrane subunit 0.68 PP_2302 DNA-binding, ATP-dependent protease 0.23 45
Pseudomonas stutzeri RCH2 0.28 Psest_4281 ABC-type spermidine/putrescine transport system, permease component I 0.69 Psest_2285 ATP-dependent protease La low > 67
Variovorax sp. OAS795 0.27 ABID97_RS04050 ABC transporter permease 0.66 ABID97_RS17590 endopeptidase La low > 91
Acidovorax sp. GW101-3H11 0.26 Ac3H11_1611 ABC transporter, permease protein 0.66 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I low > 79
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS03225 ABC transporter permease 0.39 HMPREF1058_RS01210 endopeptidase La low > 67
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS08115 ABC transporter permease 0.40 HMPREF1078_RS16185 endopeptidase La low > 61
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS17815 ABC transporter permease 0.39 ABI39_RS16520 endopeptidase La low > 72
Variovorax sp. SCN45 0.24 GFF5596 Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1) 0.64 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I low > 127
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00083 ABC transporter, permease protein 0.42 BACOVA_02571 endopeptidase La low > 96
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS12425 ABC transporter permease 0.42 HMPREF1181_RS14340 endopeptidase La low > 56

Not shown: 1 genomes with orthologs for CSW01_07155 only; 35 genomes with orthologs for CSW01_09605 only