Conservation of cofitness between CSW01_00790 and CSW01_03700 in Vibrio cholerae E7946 ATCC 55056

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00790 vitamin B12 transporter BtuB 1.0 CSW01_03700 multi-copper polyphenol oxidoreductase 0.79 7
Dickeya dadantii 3937 0.32 DDA3937_RS00995 TonB-dependent vitamin B12 receptor BtuB 0.49 DDA3937_RS16105 polyphenol oxidase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF2352 Outer membrane vitamin B12 receptor BtuB 0.47 GFF4183 COG1496: Uncharacterized conserved protein low > 78
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS18385 TonB-dependent vitamin B12 receptor BtuB 0.45 PagCFBP13505_RS16535 polyphenol oxidase low > 74
Escherichia coli Nissle 1917 0.31 ECOLIN_RS22905 TonB-dependent vitamin B12 receptor BtuB 0.47 ECOLIN_RS14670 purine nucleoside phosphorylase YfiH low > 55
Escherichia coli ECRC99 0.30 KEDOAH_14630 btuB TonB-dependent vitamin B12 receptor BtuB 0.47 KEDOAH_06965 yfiH purine nucleoside phosphorylase YfiH — —
Escherichia coli BW25113 0.30 b3966 btuB vitamin B12/cobalamin outer membrane transporter (NCBI) 0.47 b2593 yfiH hypothetical protein (NCBI) low > 76
Escherichia coli ECRC102 0.30 NIAGMN_11280 btuB TonB-dependent vitamin B12 receptor BtuB 0.47 NIAGMN_19025 yfiH purine nucleoside phosphorylase YfiH low > 80
Escherichia coli ECRC62 0.30 BNILDI_05850 btuB TonB-dependent vitamin B12 receptor BtuB 0.46 BNILDI_11735 yfiH purine nucleoside phosphorylase YfiH low > 75
Escherichia coli ECRC101 0.30 MCAODC_04030 btuB TonB-dependent vitamin B12 receptor BtuB 0.47 MCAODC_11785 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli ECRC100 0.30 OKFHMN_13530 btuB TonB-dependent vitamin B12 receptor BtuB 0.47 OKFHMN_21255 yfiH purine nucleoside phosphorylase YfiH low > 79
Escherichia coli ECOR27 0.30 NOLOHH_05675 btuB TonB-dependent vitamin B12 receptor BtuB 0.47 NOLOHH_12930 yfiH purine nucleoside phosphorylase YfiH 0.63 32
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_04084 Vitamin B12 transporter BtuB 0.46 OHPLBJKB_01113 Polyphenol oxidase low > 74
Escherichia coli ECRC98 0.30 JDDGAC_17155 btuB TonB-dependent vitamin B12 receptor BtuB 0.47 JDDGAC_24920 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli ECOR38 0.30 HEPCGN_12185 btuB TonB-dependent vitamin B12 receptor BtuB 0.47 HEPCGN_20380 yfiH purine nucleoside phosphorylase YfiH low > 88
Enterobacter asburiae PDN3 0.30 EX28DRAFT_4429 TonB-dependent vitamin B12 receptor 0.48 EX28DRAFT_2694 YfiH family protein low > 76
Serratia liquefaciens MT49 0.30 IAI46_24450 TonB-dependent vitamin B12 receptor BtuB 0.48 IAI46_03990 polyphenol oxidase low > 87
Dickeya dianthicola ME23 0.30 DZA65_RS21425 TonB-dependent vitamin B12 receptor BtuB 0.49 DZA65_RS17325 polyphenol oxidase low > 75
Pectobacterium carotovorum WPP14 0.29 HER17_RS00980 TonB-dependent vitamin B12 receptor BtuB 0.44 HER17_RS05405 polyphenol oxidase low > 75
Klebsiella michiganensis M5al 0.29 BWI76_RS00890 vitamin B12/cobalamin outer membrane transporter 0.47 BWI76_RS21445 hypothetical protein low > 92
Rahnella sp. WP5 0.29 EX31_RS14135 TonB-dependent vitamin B12 receptor BtuB 0.42 EX31_RS07565 polyphenol oxidase low > 89
Pantoea sp. MT58 0.29 IAI47_00955 TonB-dependent vitamin B12 receptor BtuB 0.44 IAI47_04430 polyphenol oxidase low > 76
Klebsiella pneumoniae MKP103 0.29 KDGMDA_09405 TonB-dependent vitamin B12 receptor BtuB 0.47 KDGMDA_02135 purine nucleoside phosphorylase YfiH low > 95
Dickeya dianthicola 67-19 0.28 HGI48_RS20380 TonB-dependent vitamin B12 receptor BtuB 0.48 HGI48_RS16230 polyphenol oxidase 0.61 29
Enterobacter sp. TBS_079 0.28 MPMX20_04514 Vitamin B12 transporter BtuB 0.47 MPMX20_03462 Polyphenol oxidase low > 85
Escherichia fergusonii Becca 0.28 EFB2_04644 Vitamin B12 transporter BtuB 0.47 EFB2_01297 Polyphenol oxidase low > 86
Lysobacter sp. OAE881 0.21 ABIE51_RS04930 TonB-dependent vitamin B12 receptor 0.39 ABIE51_RS04890 peptidoglycan editing factor PgeF low > 62
Pseudomonas stutzeri RCH2 0.20 Psest_3016 TonB-dependent vitamin B12 receptor 0.44 Psest_0710 uncharacterized protein, YfiH family — —
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_05465 btuB TonB-dependent vitamin B12 receptor 0.33 OKGIIK_01795 pgeF peptidoglycan editing factor PgeF low > 53
Dyella japonica UNC79MFTsu3.2 0.20 ABZR86_RS10930 TonB-dependent vitamin B12 receptor 0.32 ABZR86_RS10960 peptidoglycan editing factor PgeF low > 74
Pseudomonas segetis P6 0.20 MPMX49_01814 Vitamin B12 transporter BtuB 0.47 MPMX49_03921 Polyphenol oxidase low > 75
Pseudomonas aeruginosa MRSN321 0.20 DY961_RS06055 btuB;go_component=outer TonB-dependent vitamin B12 receptor 0.45 DY961_RS23735 pgeF;inference=COORDINATES peptidoglycan editing factor PgeF low > 100
Pseudomonas aeruginosa PA14 0.19 IKLFDK_06025 TonB-dependent vitamin B12 receptor 0.46 IKLFDK_00815 peptidoglycan editing factor PgeF low > 98
Pseudomonas aeruginosa PUPa3 0.19 DQ20_RS46725 btuB;go_component=outer TonB-dependent vitamin B12 receptor 0.46 DQ20_RS56200 pgeF;inference=COORDINATES peptidoglycan editing factor PgeF low > 101
Xanthomonas campestris pv. campestris strain 8004 0.19 Xcc-8004.1388.1 Outer membrane vitamin B12 receptor BtuB 0.37 Xcc-8004.1363.1 COG1496: Uncharacterized conserved protein — —
Rhodanobacter sp000427505 FW510-R12 0.18 LRK53_RS00695 TonB-dependent vitamin B12 receptor 0.35 LRK53_RS05050 peptidoglycan editing factor PgeF — —
Acidovorax sp. GW101-3H11 0.17 Ac3H11_985 Outer membrane vitamin B12 receptor BtuB 0.38 Ac3H11_2305 COG1496: Uncharacterized conserved protein low > 79
Rhodanobacter denitrificans FW104-10B01 0.17 LRK54_RS07830 TonB-dependent vitamin B12 receptor 0.33 LRK54_RS04960 peptidoglycan editing factor PgeF low > 59
Variovorax sp. SCN45 0.17 GFF450 Outer membrane vitamin B12 receptor BtuB 0.43 GFF807 FIG00003370: Multicopper polyphenol oxidase low > 127
Rhodanobacter denitrificans MT42 0.17 LRK55_RS07560 TonB-dependent vitamin B12 receptor 0.33 LRK55_RS04740 peptidoglycan editing factor PgeF low > 63
Variovorax sp. OAS795 0.17 ABID97_RS17425 TonB-dependent receptor 0.41 ABID97_RS12405 peptidoglycan editing factor PgeF low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3976 Outer membrane vitamin B12 receptor BtuB 0.35 GFF4798 COG1496: Uncharacterized conserved protein — —
Pseudomonas lactucae CFBP13502 0.16 GEMAOFIL_05148 Vitamin B12 transporter BtuB 0.45 GEMAOFIL_00970 Polyphenol oxidase low > 96
Paraburkholderia graminis OAS925 0.16 ABIE53_001246 vitamin B12 transporter 0.38 ABIE53_002063 YfiH family protein low > 113
Pseudomonas sp. DMC3 0.16 GFF3838 Vitamin B12 transporter BtuB 0.43 GFF4005 Polyphenol oxidase low > 89
Burkholderia phytofirmans PsJN 0.16 BPHYT_RS04850 TonB-denpendent receptor 0.39 BPHYT_RS09140 laccase — —
Paraburkholderia bryophila 376MFSha3.1 0.16 H281DRAFT_00136 vitamin B12 transporter 0.37 H281DRAFT_00849 conserved hypothetical protein low > 103
Pseudomonas simiae WCS417 0.16 PS417_25210 TonB-dependent receptor 0.45 PS417_03825 laccase low > 88
Methylophilus sp. DMC18 0.16 GFF1480 Vitamin B12 transporter BtuB 0.47 GFF1214 Polyphenol oxidase low > 43
Ralstonia sp. UNC404CL21Col 0.16 ABZR87_RS00095 TonB-dependent receptor 0.38 ABZR87_RS13310 peptidoglycan editing factor PgeF low > 80
Pseudomonas sp. SVBP6 0.16 COO64_RS15835 TonB-dependent receptor domain-containing protein 0.46 COO64_RS11060 pgeF peptidoglycan editing factor PgeF low > 93
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_1324 Outer membrane vitamin B12 receptor BtuB 0.43 PfGW456L13_1494 COG1496: Uncharacterized conserved protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.15 Pf1N1B4_2660 Outer membrane vitamin B12 receptor BtuB 0.44 Pf1N1B4_2823 COG1496: Uncharacterized conserved protein low > 87
Ralstonia solanacearum UW163 0.15 UW163_RS09175 TonB-dependent receptor 0.38 UW163_RS14825 peptidoglycan editing factor PgeF — —
Ralstonia solanacearum IBSBF1503 0.15 RALBFv3_RS04495 TonB-dependent receptor 0.38 RALBFv3_RS01515 peptidoglycan editing factor PgeF low > 76
Pseudomonas orientalis W4I3 0.15 QF045_RS27180 TonB-dependent receptor 0.45 QF045_RS06810 peptidoglycan editing factor PgeF low > 93
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS26850 TonB-dependent receptor 0.44 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas fluorescens SBW25 0.15 PFLU_RS26850 TonB-dependent receptor 0.44 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Paraburkholderia sabiae LMG 24235 0.15 QEN71_RS25145 TonB-dependent receptor 0.35 QEN71_RS22210 peptidoglycan editing factor PgeF low > 153
Marinobacter adhaerens HP15 0.15 HP15_3953 outer membrane receptor for transport of vitamin B 0.43 HP15_528 multi-copper polyphenol oxidoreductase, laccase low > 73
Pseudomonas putida KT2440 0.15 PP_0525 TonB-dependent receptor, B12 family 0.45 PP_0624 Uncharacterized protein YfiH low > 96
Ralstonia solanacearum PSI07 0.15 RPSI07_RS12875 TonB-dependent receptor 0.39 RPSI07_RS15975 peptidoglycan editing factor PgeF low > 81
Pseudomonas sp. S08-1 0.15 OH686_15755 Outer membrane vitamin B12 receptor BtuB 0.43 OH686_16415 Multicopper polyphenol oxidase low > 80
Pseudomonas fluorescens FW300-N2E3 0.15 AO353_06660 TonB-dependent receptor 0.42 AO353_14225 laccase low > 101
Pseudomonas sp. RS175 0.15 PFR28_03938 Vitamin B12 transporter BtuB 0.46 PFR28_03747 Polyphenol oxidase low > 88
Ralstonia solanacearum GMI1000 0.15 RS_RS12050 TonB-dependent receptor 0.41 RS_RS08210 peptidoglycan editing factor PgeF low > 80
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_4930 Outer membrane vitamin B12 receptor BtuB 0.45 Pf6N2E2_5128 COG1496: Uncharacterized conserved protein low > 103
Pseudomonas sp. BP01 0.14 JOY50_RS20070 TonB-dependent receptor domain-containing protein 0.45 JOY50_RS27135 pgeF peptidoglycan editing factor PgeF low > 84
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS16140 TonB-dependent receptor 0.41 RR42_RS07595 hypothetical protein low > 128
Pseudomonas fluorescens FW300-N2C3 0.14 AO356_14985 TonB-dependent receptor 0.48 AO356_15930 laccase low > 104
Xanthobacter sp. DMC5 0.14 GFF2992 Vitamin B12 transporter BtuB 0.28 GFF1931 Polyphenol oxidase — —
Castellaniella sp019104865 MT123 0.14 ABCV34_RS14545 TonB-dependent receptor 0.35 ABCV34_RS01890 peptidoglycan editing factor PgeF low > 48
Alteromonas macleodii MIT1002 0.13 MIT1002_00716 Outer membrane cobalamin translocator 0.33 MIT1002_02678 Laccase domain protein YfiH low > 70
Sphingobium sp. HT1-2 0.12 GFF830 Outer membrane vitamin B12 receptor BtuB 0.24 GFF3355 FIG00003370: Multicopper polyphenol oxidase low > 95
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_0620 Outer membrane cobalamin receptor protein 0.20 Ga0059261_1457 YfiH family protein low > 68
Rhodospirillum rubrum S1H 0.11 Rru_A0488 TonB-dependent receptor (NCBI) 0.29 Rru_A0643 Protein of unknown function DUF152 (NCBI) 0.66 54
Caulobacter crescentus NA1000 0.11 CCNA_01826 vitamin B12 receptor 0.25 CCNA_00523 multicopper polyphenol oxidase low > 66
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_01826 vitamin B12 receptor 0.25 CCNA_00523 multicopper polyphenol oxidase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS12105 TonB-dependent receptor 0.25 A4249_RS09865 peptidoglycan editing factor PgeF low > 48
Azospirillum brasilense Sp245 0.08 AZOBR_RS19160 outer membrane cobalamin receptor protein BtuB 0.23 AZOBR_RS31175 polyphenol oxidase low > 97

Not shown: 3 genomes with orthologs for CSW01_00790 only; 33 genomes with orthologs for CSW01_03700 only