| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_04065 | | D-amino acid dehydrogenase small subunit | 1.0 | CSW01_03050 | | cytochrome b | 0.47 | 11 |
| Agrobacterium fabrum C58 | 0.58 | Atu3293 | | D-amino acid dehydrogenase small subunit | 0.40 | Atu2238 | | ubiquinol-cytochrome c reductase cytochrome b subunit | low | > 89 |
| Azospirillum sp. SherDot2 | 0.57 | MPMX19_06097 | | D-amino acid dehydrogenase 1 | 0.43 | MPMX19_05013 | | Cytochrome b | low | > 112 |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_2144 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.68 | Pf1N1B4_961 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_09155 | | amino acid dehydrogenase | 0.67 | AO353_15250 | | cytochrome B | low | > 101 |
| Azospirillum brasilense Sp245 | 0.57 | AZOBR_RS08020 | | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | 0.43 | AZOBR_RS20750 | | cytochrome B | low | > 97 |
| Rhodanobacter denitrificans FW104-10B01 | 0.57 | LRK54_RS00590 | | D-amino acid dehydrogenase | 0.55 | LRK54_RS13770 | | cytochrome bc complex cytochrome b subunit | — | — |
| Rhodanobacter denitrificans MT42 | 0.57 | LRK55_RS00360 | | D-amino acid dehydrogenase | 0.55 | LRK55_RS13485 | | cytochrome bc complex cytochrome b subunit | 0.49 | 47 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS29380 | | D-amino acid dehydrogenase | 0.66 | PFLU_RS04200 | | cytochrome bc complex cytochrome b subunit | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS29380 | | D-amino acid dehydrogenase | 0.66 | PFLU_RS04200 | | cytochrome bc complex cytochrome b subunit | low | > 109 |
| Rhodanobacter sp000427505 FW510-R12 | 0.57 | LRK53_RS09560 | | D-amino acid dehydrogenase | 0.54 | LRK53_RS14830 | | cytochrome bc complex cytochrome b subunit | — | — |
| Pseudomonas simiae WCS417 | 0.57 | PS417_27705 | | amino acid dehydrogenase | 0.66 | PS417_04160 | | cytochrome B | — | — |
| Pseudomonas stutzeri RCH2 | 0.57 | Psest_3793 | | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | 0.65 | Psest_3278 | | Cytochrome b subunit of the bc complex | — | — |
| Rhodanobacter sp. FW510-T8 | 0.57 | OKGIIK_06665 | dadA | D-amino acid dehydrogenase small subunit | 0.53 | OKGIIK_03010 | qcrB,petB | cytochrome b | — | — |
| Pseudomonas sp. S08-1 | 0.57 | OH686_13685 | | D-amino acid dehydrogenase | 0.67 | OH686_08385 | | Ubiquinol-cytochrome C reductase, cytochrome B subunit | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.56 | PfGW456L13_812 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.68 | PfGW456L13_1635 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.56 | COO64_RS01395 | dadA | D-amino acid dehydrogenase | 0.67 | COO64_RS11800 | | cytochrome bc complex cytochrome b subunit | low | > 93 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.56 | Xcc-8004.4621.1 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.57 | Xcc-8004.2229.1 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | 0.40 | 62 |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS08375 | | D-amino acid dehydrogenase small subunit | 0.56 | HSERO_RS20240 | | cytochrome B | low | > 78 |
| Xanthobacter sp. DMC5 | 0.56 | GFF1413 | | D-amino acid dehydrogenase 1 | 0.42 | GFF62 | | Cytochrome b/c1 | — | — |
| Pseudomonas sp. DMC3 | 0.56 | GFF390 | | D-amino acid dehydrogenase 1 | 0.66 | GFF4436 | | Cytochrome b | low | > 89 |
| Pseudomonas sp. RS175 | 0.56 | PFR28_04399 | | D-amino acid dehydrogenase 1 | 0.68 | PFR28_03605 | | Cytochrome b | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_4391 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.68 | Pf6N2E2_5338 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | 0.22 | 41 |
| Pseudomonas aeruginosa PA14 | 0.56 | IKLFDK_26930 | | D-amino acid dehydrogenase | 0.68 | IKLFDK_01940 | | cytochrome b | 0.68 | 59 |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_12620 | | amino acid dehydrogenase | 0.68 | AO356_17070 | | cytochrome B | low | > 104 |
| Variovorax sp. OAS795 | 0.56 | ABID97_RS18125 | | D-amino acid dehydrogenase | 0.52 | ABID97_RS22980 | | cytochrome bc complex cytochrome b subunit | low | > 91 |
| Pseudomonas putida KT2440 | 0.56 | PP_4434 | | D-amino acid dehydrogenase 1 small subunit | 0.66 | PP_1318 | | Cytochrome b | low | > 96 |
| Pseudomonas sp. BP01 | 0.55 | JOY50_RS09125 | dadA | D-amino acid dehydrogenase | 0.66 | JOY50_RS15210 | | cytochrome bc complex cytochrome b subunit | low | > 84 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.54 | A4249_RS08770 | | D-amino acid dehydrogenase | 0.42 | A4249_RS02565 | | cytochrome b N-terminal domain-containing protein | low | > 48 |
| Paraburkholderia graminis OAS925 | 0.54 | ABIE53_003133 | | D-amino-acid dehydrogenase | 0.56 | ABIE53_003684 | | ubiquinol-cytochrome c reductase cytochrome b subunit | low | > 113 |
| Methylophilus sp. DMC18 | 0.54 | GFF2173 | | D-amino acid dehydrogenase 1 | 0.58 | GFF1578 | | Cytochrome b/c1 | — | — |
| Variovorax sp. SCN45 | 0.54 | GFF1773 | | D-amino acid dehydrogenase (EC 1.4.99.6) | 0.52 | GFF6695 | | Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 127 |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS13870 | | D-amino acid dehydrogenase small subunit | 0.56 | RALBFv3_RS06725 | | cytochrome b | low | > 76 |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS15940 | | D-amino acid dehydrogenase small subunit | 0.56 | UW163_RS06890 | | cytochrome b | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_04287 | | D-amino-acid dehydrogenase | 0.58 | H281DRAFT_05670 | | ubiquinol-cytochrome c reductase cytochrome b subunit | — | — |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS04605 | | D-amino acid dehydrogenase small subunit | 0.55 | RS_RS14670 | | cytochrome b | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS19600 | | D-amino acid dehydrogenase small subunit | 0.55 | RPSI07_RS10510 | | cytochrome b | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.53 | BPHYT_RS14790 | | D-amino acid dehydrogenase | 0.58 | BPHYT_RS17625 | | cytochrome B | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS04190 | | D-amino acid dehydrogenase | 0.57 | QEN71_RS27780 | | cytochrome bc complex cytochrome b subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS09560 | | D-amino acid dehydrogenase | 0.54 | ABZR87_RS02380 | | cytochrome bc complex cytochrome b subunit | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS10810 | | D-amino acid dehydrogenase | 0.56 | ABCV34_RS12630 | | cytochrome bc complex cytochrome b subunit | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS04585 | | amino acid dehydrogenase | 0.55 | RR42_RS18820 | | cytochrome B | 0.27 | 23 |
| Dinoroseobacter shibae DFL-12 | 0.50 | Dshi_0558 | | D-amino-acid dehydrogenase (RefSeq) | 0.38 | Dshi_3277 | | Cytochrome b/b6 domain (RefSeq) | — | — |
| Dechlorosoma suillum PS | 0.42 | Dsui_0501 | | glycine/D-amino acid oxidase, deaminating | 0.57 | Dsui_1813 | | cytochrome b subunit of the bc complex | — | — |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A1546 | | FAD dependent oxidoreductase (NCBI) | 0.44 | Rru_A0363 | | Cytochrome b/b6-like (NCBI) | — | — |
| Marinobacter adhaerens HP15 | 0.38 | HP15_2610 | | D-amino acid dehydrogenase small subunit | 0.65 | HP15_546 | | ubiquinol-cytochrome c reductase, cytochrome b | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF1973 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.56 | GFF1294 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.33 | Ac3H11_4848 | | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | 0.54 | Ac3H11_4751 | | Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.25 | Ga0059261_3351 | | Glycine/D-amino acid oxidases (deaminating) | 0.41 | Ga0059261_3220 | | Cytochrome b subunit of the bc complex | low | > 68 |
| Dyella japonica UNC79MFTsu3.2 | 0.18 | ABZR86_RS08930 | | FAD-dependent oxidoreductase | 0.52 | ABZR86_RS09875 | | cytochrome bc complex cytochrome b subunit | — | — |
| Shewanella amazonensis SB2B | 0.17 | Sama_1533 | | D-amino-acid dehydrogenase (RefSeq) | 0.73 | Sama_3020 | | ubiquinol-cytochrome c reductase, cytochrome b (RefSeq) | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.16 | SM_b20267 | | D-amino acid dehydrogenase | 0.40 | SMc00188 | | cytochrome B transmembrane protein | low | > 103 |
| Shewanella loihica PV-4 | 0.16 | Shew_2360 | | D-hydroxyproline dehydrogenase (from data) | 0.73 | Shew_0571 | | cytochrome b/b6 domain-containing protein (RefSeq) | low | > 60 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c05140 | | D-amino acid dehydrogenase small subunit | 0.37 | PGA1_c33990 | | cytochrome b | — | — |
| Rhizobium sp. OAE497 | 0.14 | ABIE40_RS02050 | | FAD-dependent oxidoreductase | 0.40 | ABIE40_RS13125 | | cytochrome b N-terminal domain-containing protein | low | > 107 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS13645 | | FAD-binding oxidoreductase | 0.45 | ABIE41_RS11195 | | cytochrome b/b6 | low | > 77 |
Not shown: 33 genomes with orthologs for CSW01_04065 only; 7 genomes with orthologs for CSW01_03050 only