Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS14915 in Burkholderia phytofirmans PsJN

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS14915 phosphoserine aminotransferase 0.74 8
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.81 ABIE53_003159 phosphoserine aminotransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.96 H281DRAFT_03926 phosphoserine aminotransferase apoenzyme — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.93 QEN71_RS04065 3-phosphoserine/phosphohydroxythreonine transaminase 0.67 58
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.65 RPSI07_RS19715 3-phosphoserine/phosphohydroxythreonine transaminase 0.71 19
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.66 RALBFv3_RS13755 3-phosphoserine/phosphohydroxythreonine transaminase 0.45 30
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.66 UW163_RS16055 3-phosphoserine/phosphohydroxythreonine transaminase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.67 RS_RS04490 3-phosphoserine/phosphohydroxythreonine aminotransferase 0.56 11
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.66 ABZR87_RS09445 3-phosphoserine/phosphohydroxythreonine transaminase 0.66 7
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.66 HSERO_RS18435 MFS transporter — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.67 RR42_RS04455 MFS transporter — —
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.57 OH686_20865 phosphoserine transaminase — —
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.55 PP_1768 phosphoserine aminotransferase — —
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.44 Shewana3_1973 phosphoserine aminotransferase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.56 Psyr_3646 phosphoserine aminotransferase apoenzyme — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.56 Psyr_3646 phosphoserine aminotransferase apoenzyme — —
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.56 PFR28_00906 Phosphoserine aminotransferase — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.55 PS417_08120 MFS transporter — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.55 AO356_03470 3-phosphoserine/phosphohydroxythreonine aminotransferase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.55 Pf6N2E2_2521 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.55 PFLU_RS08090 3-phosphoserine/phosphohydroxythreonine transaminase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.55 PFLU_RS08090 3-phosphoserine/phosphohydroxythreonine transaminase — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.44 Pf1N1B4_351 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.49 CSW01_05875 3-phosphoserine/phosphohydroxythreonine transaminase — —
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.52 HP15_1361 phosphoserine aminotransferase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.55 PfGW456L13_2175 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.56 Psest_1983 phosphoserine aminotransferase — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.55 ABCV34_RS07115 3-phosphoserine/phosphohydroxythreonine transaminase — —
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.44 SO2410 serC phosphoserine aminotransferase (NCBI ptt file) — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.56 AO353_02075 3-phosphoserine/phosphohydroxythreonine aminotransferase 0.79 4
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.44 Sama_1732 phosphoserine aminotransferase (RefSeq) — —
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.51 IAI47_12865 3-phosphoserine/phosphohydroxythreonine transaminase — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.47 Shew_1950 phosphoserine aminotransferase (RefSeq) — —
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.55 b0907 serC phosphoserine aminotransferase (NCBI) 0.90 37
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.55 OHPLBJKB_02761 Phosphoserine aminotransferase — —
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.55 ECD_00911 3-phosphoserine/phosphohydroxythreonine aminotransferase low > 61
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.55 NOLOHH_22050 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.91 9
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.55 BNILDI_20305 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.96 7
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.56 HEPCGN_23030 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.83 21
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.55 OKFHMN_05490 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.93 50
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.55 MCAODC_24880 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.80 40
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.55 KEDOAH_22245 serC 3-phosphoserine/phosphohydroxythreonine transaminase — —
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.55 NIAGMN_03210 serC 3-phosphoserine/phosphohydroxythreonine transaminase — —
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.55 JDDGAC_09100 serC 3-phosphoserine/phosphohydroxythreonine transaminase 0.84 22
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 Ac3H11_2573 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.56 ECOLIN_RS04805 3-phosphoserine/phosphohydroxythreonine transaminase 0.79 15
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.56 EFB2_03157 Phosphoserine aminotransferase low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.52 EX28DRAFT_2028 phosphoserine aminotransferase apoenzyme (EC 2.6.1.52) — —
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.53 IAI46_08635 3-phosphoserine/phosphohydroxythreonine transaminase 0.62 33
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.53 LU632_RS09790 serC 3-phosphoserine/phosphohydroxythreonine transaminase — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.53 BWI76_RS09755 phosphoserine transaminase 0.72 56
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.55 MPMX20_01566 Phosphoserine aminotransferase 0.89 13
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.54 GFF3664 Phosphoserine aminotransferase (EC 2.6.1.52) low > 78
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 GFF6183 Phosphoserine aminotransferase (EC 2.6.1.52) — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.52 MPMX26_02219 Phosphoserine aminotransferase — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.54 DZA65_RS09990 3-phosphoserine/phosphohydroxythreonine transaminase — —
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.55 DDA3937_RS09670 3-phosphoserine/phosphohydroxythreonine transaminase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.49 MIT1002_02192 Phosphoserine aminotransferase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.55 HGI48_RS09680 3-phosphoserine/phosphohydroxythreonine transaminase — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.61 ABID97_RS09520 3-phosphoserine/phosphohydroxythreonine transaminase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.53 HER17_RS12290 3-phosphoserine/phosphohydroxythreonine transaminase — —
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.48 Xcc-8004.3283.1 Phosphoserine aminotransferase (EC 2.6.1.52) 0.89 9
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.51 ABIE51_RS12150 3-phosphoserine/phosphohydroxythreonine transaminase 0.69 35
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.48 B158DRAFT_2322 phosphoserine aminotransferase apoenzyme (EC 2.6.1.52) — —
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS14200 shikimate dehydrogenase 0.40 HMPREF1078_RS15400 3-phosphoserine/phosphohydroxythreonine transaminase 0.93 7
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.40 HMPREF1181_RS16870 3-phosphoserine/phosphohydroxythreonine transaminase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.40 ABZR88_RS09230 3-phosphoserine/phosphohydroxythreonine transaminase — —
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.38 HMPREF1058_RS04300 3-phosphoserine/phosphohydroxythreonine transaminase low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS12665 shikimate dehydrogenase 0.38 ABI39_RS16905 3-phosphoserine/phosphohydroxythreonine transaminase 0.84 12
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.41 CA265_RS09005 phosphoserine transaminase — —
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.40 BACOVA_04029 phosphoserine transaminase — —
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.41 BT1153 phosphoserine aminotransferase (NCBI ptt file) — —

Not shown: 19 genomes with orthologs for BPHYT_RS16975 only; 7 genomes with orthologs for BPHYT_RS14915 only