Conservation of cofitness between BBR_RS10735 and BBR_RS16570 in Bifidobacterium breve UCC2003

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS10735 zinc metalloprotease HtpX 1.0 BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 4
Mycobacterium tuberculosis H37Rv 0.42 Rv0563 Probable protease transmembrane protein heat shock protein HtpX 0.53 Rv2733c Conserved hypothetical alanine, arginine-rich protein low > 58
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS01470 protease HtpX homolog 0.31 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_02238 Heat shock protein. Metallo peptidase. MEROPS family M48B 0.30 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.24 76
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS04955 zinc metalloprotease HtpX 0.31 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Ralstonia solanacearum GMI1000 0.40 RS_RS00370 protease HtpX 0.32 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS00170 zinc metalloprotease HtpX 0.31 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 153
Ralstonia solanacearum PSI07 0.40 RPSI07_RS23580 zinc metalloprotease HtpX 0.32 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS09785 protease 0.32 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Ralstonia solanacearum UW163 0.40 UW163_RS03795 protease 0.32 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS20455 protease HtpX 0.29 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase low > 128
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_0946 peptidase M48 Ste24p (RefSeq) 0.28 DvMF_1330 RNA modification enzyme, MiaB family (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU2494 peptidase, M48 family (TIGR) 0.32 DVU0984 miaB tRNA-i(6)A37 modification enzyme MiaB (TIGR) low > 55
Agrobacterium fabrum C58 0.36 Atu2826 protease heat shock protein 0.29 Atu0356 miaB protein low > 89
Rhizobium sp. OAE497 0.35 ABIE40_RS19145 zinc metalloprotease HtpX 0.30 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 107
Sinorhizobium meliloti 1021 0.35 SMc04091 heat shock protein HtpX 0.30 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase low > 103
Dechlorosoma suillum PS 0.34 Dsui_0815 Zn-dependent protease with chaperone function 0.31 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 51
Rhodopseudomonas palustris CGA009 0.34 TX73_004060 zinc metalloprotease HtpX 0.29 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Bosea sp. OAE506 0.34 ABIE41_RS05110 zinc metalloprotease HtpX 0.28 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 77
Methanococcus maripaludis JJ 0.32 MMJJ_RS03175 zinc metalloprotease HtpX 0.15 MMJJ_RS03110 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase low > 28
Azospirillum sp. SherDot2 0.32 MPMX19_00488 Protease HtpX 0.29 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 112
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_2238 Zn-dependent protease with chaperone function 0.28 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS14650 zinc metalloprotease HtpX 0.29 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 48
Rhodanobacter denitrificans FW104-10B01 0.18 LRK54_RS14825 protease HtpX 0.30 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 59
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_03645 htpX protease HtpX 0.29 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 52
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF526 Heat shock protease 0.30 GFF613 tRNA-i(6)A37 methylthiotransferase low > 90
Pseudomonas simiae WCS417 0.16 PS417_08555 protease HtpX 0.32 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase — —
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS08505 protease HtpX 0.32 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Pseudomonas fluorescens SBW25 0.16 PFLU_RS08505 protease HtpX 0.32 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Fusobacterium nucleatum SB010 0.16 HUW76_05515 M48 family metalloprotease 0.30 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 35
Marinobacter adhaerens HP15 0.16 HP15_2097 protease HtpX-like protein 0.30 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 73
Pseudomonas fluorescens FW300-N1B4 0.16 Pf1N1B4_262 Probable protease htpX homolog (EC 3.4.24.-) 0.32 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase low > 87
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_03095 protease HtpX 0.32 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B 0.31 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 86
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_2250 Probable protease htpX homolog (EC 3.4.24.-) 0.31 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase low > 87
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B 0.31 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 86
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_19145 protease HtpX 0.31 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase low > 101
Acinetobacter radioresistens SK82 0.16 MPMX26_00808 Protease HtpX 0.29 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_2447 Probable protease htpX homolog (EC 3.4.24.-) 0.32 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase low > 103
Lysobacter sp. OAE881 0.15 ABIE51_RS13515 protease HtpX 0.30 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS00580 protease HtpX 0.30 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Enterobacter sp. TBS_079 0.15 MPMX20_02736 Protease HtpX 0.31 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 85
Enterobacter asburiae PDN3 0.15 EX28DRAFT_0727 Zn-dependent protease with chaperone function 0.32 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 76
Castellaniella sp019104865 MT123 0.15 ABCV34_RS02205 protease HtpX 0.30 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Klebsiella michiganensis M5al 0.14 BWI76_RS17970 zinc metalloprotease HtpX 0.32 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Pantoea sp. MT58 0.14 IAI47_08710 protease HtpX 0.32 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2844 Probable protease HtpX (EC 3.4.24.-) 0.32 GFF4579 tRNA-i(6)A37 methylthiotransferase — —
Dickeya dianthicola 67-19 0.14 HGI48_RS11505 protease HtpX 0.33 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 71
Dickeya dianthicola ME23 0.14 DZA65_RS11840 protease HtpX 0.33 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Dickeya dadantii 3937 0.14 DDA3937_RS11460 protease HtpX 0.33 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Shewanella sp. ANA-3 0.13 Shewana3_2512 heat shock protein HtpX (RefSeq) 0.31 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 73
Shewanella oneidensis MR-1 0.13 SO2728 htpX peptidase HtpX (NCBI ptt file) 0.31 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.25 52
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_05670 protease HtpX 0.31 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Shewanella loihica PV-4 0.12 Shew_1723 heat shock protein HtpX (RefSeq) 0.30 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 60

Not shown: 9 genomes with orthologs for BBR_RS10735 only; 37 genomes with orthologs for BBR_RS16570 only