| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_2180 | | RNA polymerase, sigma-24 subunit, RpoE | 1.0 | B158DRAFT_1955 | | HflC protein | 0.66 | 4 |
| Shewanella loihica PV-4 | 0.72 | Shew_1048 | | RNA polymerase sigma factor RpoE (RefSeq) | 0.47 | Shew_0569 | | HflC protein (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_3032 | | RNA polymerase sigma factor RpoE (RefSeq) | 0.47 | Shewana3_0600 | | HflC protein (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.71 | SO1342 | rpoE | RNA polymerase sigma-24 factor (NCBI ptt file) | 0.47 | SO0606 | hflC | hflC protein (NCBI ptt file) | — | — |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_02719 | | Sigma-24 | 0.51 | MIT1002_03785 | | Modulator of FtsH protease HflC | — | — |
| Pseudomonas sp. S08-1 | 0.70 | OH686_20045 | | RNA polymerase sigma factor RpoE | 0.35 | OH686_09455 | | HflC protein | low | > 80 |
| Vibrio cholerae E7946 ATCC 55056 | 0.69 | CSW01_12485 | | RNA polymerase sigma factor RpoE | 0.46 | CSW01_01850 | | protease modulator HflC | — | — |
| Pseudomonas fluorescens SBW25 | 0.69 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | 0.36 | PFLU_RS02585 | | protease modulator HflC | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.69 | Pf1N1B4_3323 | | RNA polymerase sigma-H factor AlgT | 0.38 | Pf1N1B4_1409 | | HflC protein | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.69 | PfGW456L13_4516 | | RNA polymerase sigma-H factor AlgT | 0.37 | PfGW456L13_151 | | HflC protein | low | > 87 |
| Pseudomonas simiae WCS417 | 0.69 | PS417_07120 | | RNA polymerase sigma-H factor | 0.33 | PS417_02505 | | membane protease HflC | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.69 | AO356_04575 | | RNA polymerase subunit sigma | 0.37 | AO356_08640 | | membrane protease HflC | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.69 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | 0.36 | PFLU_RS02585 | | protease modulator HflC | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_3100 | | RNA polymerase sigma factor RpoE | 0.35 | Psest_0686 | | Membrane protease subunits, stomatin/prohibitin homologs | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.69 | Pf6N2E2_2756 | | RNA polymerase sigma-H factor AlgT | 0.37 | Pf6N2E2_3611 | | HflC protein | low | > 103 |
| Pseudomonas sp. RS175 | 0.69 | PFR28_00690 | | RNA polymerase sigma-H factor | 0.35 | PFR28_05124 | | Modulator of FtsH protease HflC | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.69 | AO353_17625 | | RNA polymerase subunit sigma | 0.37 | AO353_13160 | | membrane protease HflC | low | > 101 |
| Escherichia coli ECRC98 | 0.69 | JDDGAC_25040 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | JDDGAC_15880 | hflC | protease modulator HflC | — | — |
| Escherichia coli BW25113 | 0.69 | b2573 | rpoE | RNA polymerase, sigma 24 (sigma E) factor (NCBI) | 0.40 | b4175 | hflC | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | — | — |
| Escherichia coli Nissle 1917 | 0.69 | ECOLIN_RS14560 | | RNA polymerase sigma factor RpoE | 0.40 | ECOLIN_RS24245 | | protease modulator HflC | — | — |
| Escherichia coli ECRC102 | 0.69 | NIAGMN_19145 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | NIAGMN_10090 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECOR38 | 0.69 | HEPCGN_20520 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | HEPCGN_10470 | hflC | protease modulator HflC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.69 | OHPLBJKB_01134 | | ECF RNA polymerase sigma-E factor | 0.40 | OHPLBJKB_03867 | | Modulator of FtsH protease HflC | — | — |
| Escherichia fergusonii Becca | 0.69 | EFB2_01323 | | ECF RNA polymerase sigma-E factor | 0.40 | EFB2_04360 | | Modulator of FtsH protease HflC | — | — |
| Escherichia coli ECOR27 | 0.69 | NOLOHH_13050 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | NOLOHH_04505 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC62 | 0.69 | BNILDI_11850 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | BNILDI_06985 | hflC | protease modulator HflC | — | — |
| Pseudomonas putida KT2440 | 0.69 | PP_1427 | | RNA polymerase sigma E factor | 0.34 | PP_4891 | | integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex | low | > 96 |
| Escherichia coli BL21 | 0.69 | ECD_02467 | | RNA polymerase sigma E factor | 0.40 | ECD_04042 | | HflB protease modulator specific for phage lambda cII repressor | — | — |
| Escherichia coli ECRC101 | 0.69 | MCAODC_11905 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | MCAODC_02755 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC99 | 0.69 | KEDOAH_06845 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | KEDOAH_15915 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC100 | 0.69 | OKFHMN_21375 | rpoE | RNA polymerase sigma factor RpoE | 0.40 | OKFHMN_12240 | hflC | protease modulator HflC | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF2107 | | RNA polymerase sigma factor RpoE | 0.39 | GFF828 | | HflC protein | — | — |
| Enterobacter sp. TBS_079 | 0.68 | MPMX20_03444 | | ECF RNA polymerase sigma-E factor | 0.40 | MPMX20_00456 | | Modulator of FtsH protease HflC | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.68 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | 0.36 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.68 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | 0.36 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Enterobacter asburiae PDN3 | 0.68 | EX28DRAFT_0072 | | RNA polymerase sigma factor RpoE | 0.39 | EX28DRAFT_3372 | | HflC protein | — | — |
| Pantoea sp. MT58 | 0.67 | IAI47_04850 | | RNA polymerase sigma factor RpoE | 0.39 | IAI47_02605 | | protease modulator HflC | — | — |
| Rahnella sp. WP5 | 0.67 | EX31_RS21800 | | RNA polymerase sigma factor RpoE | 0.37 | EX31_RS08805 | | protease modulator HflC | — | — |
| Dickeya dadantii 3937 | 0.67 | DDA3937_RS15765 | | RNA polymerase sigma factor RpoE | 0.37 | DDA3937_RS18595 | | protease modulator HflC | — | — |
| Pectobacterium carotovorum WPP14 | 0.67 | HER17_RS05780 | | RNA polymerase sigma factor RpoE | 0.40 | HER17_RS02600 | | protease modulator HflC | — | — |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS16930 | | RNA polymerase sigma factor RpoE | 0.38 | DZA65_RS19665 | | protease modulator HflC | low | > 75 |
| Serratia liquefaciens MT49 | 0.67 | IAI46_19585 | | RNA polymerase sigma factor RpoE | 0.39 | IAI46_01640 | | protease modulator HflC | — | — |
| Dickeya dianthicola 67-19 | 0.67 | HGI48_RS15850 | | RNA polymerase sigma factor RpoE | 0.38 | HGI48_RS18530 | | protease modulator HflC | low | > 71 |
| Klebsiella michiganensis M5al | 0.66 | BWI76_RS21355 | | RNA polymerase sigma factor RpoE | 0.39 | BWI76_RS02550 | | protease modulator HflC | — | — |
| Shewanella amazonensis SB2B | 0.66 | Sama_0874 | | RNA polymerase sigma factor RpoE (RefSeq) | 0.43 | Sama_3022 | | hflC protein (RefSeq) | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.66 | LU632_RS15425 | rpoE | RNA polymerase sigma factor RpoE | 0.38 | LU632_RS02070 | hflC | protease modulator HflC | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.65 | OKGIIK_07900 | rpoE | RNA polymerase sigma factor RpoE | 0.39 | OKGIIK_06645 | hflC | protease modulator HflC | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.65 | LRK54_RS16940 | | RNA polymerase sigma factor RpoE | 0.35 | LRK54_RS00615 | | protease modulator HflC | 0.86 | 26 |
| Rhodanobacter denitrificans MT42 | 0.65 | LRK55_RS16655 | | RNA polymerase sigma factor RpoE | 0.35 | LRK55_RS00385 | | protease modulator HflC | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.63 | ABZR86_RS07180 | | RNA polymerase sigma factor RpoE | 0.36 | ABZR86_RS08350 | | protease modulator HflC | low | > 74 |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS11910 | | RNA polymerase sigma factor RpoE | 0.37 | UW163_RS12780 | | protease modulator HflC | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.62 | RR42_RS14080 | | RNA polymerase sigma factor RpoE | 0.37 | RR42_RS13100 | | membrane protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS05225 | | RNA polymerase sigma factor RpoE | 0.37 | RS_RS06125 | | protease modulator HflC | — | — |
| Ralstonia solanacearum PSI07 | 0.62 | RPSI07_RS19015 | | RNA polymerase sigma factor RpoE | 0.37 | RPSI07_RS18060 | | protease modulator HflC | low | > 81 |
| Dechlorosoma suillum PS | 0.62 | Dsui_2453 | | RNA polymerase sigma factor RpoE | 0.40 | Dsui_3134 | | membrane protease subunit, stomatin/prohibitin | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS14445 | | RNA polymerase sigma factor RpoE | 0.37 | RALBFv3_RS15315 | | protease modulator HflC | — | — |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS10165 | | RNA polymerase sigma factor RpoE | 0.36 | ABZR87_RS10955 | | protease modulator HflC | low | > 80 |
| Lysobacter sp. OAE881 | 0.62 | ABIE51_RS13890 | | RNA polymerase sigma factor RpoE | 0.37 | ABIE51_RS06555 | | protease modulator HflC | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.61 | Xcc-8004.3681.1 | | RNA polymerase sigma factor RpoE | 0.32 | Xcc-8004.3954.1 | | HflC protein | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_003043 | | RNA polymerase sigma-70 factor (ECF subfamily) | 0.27 | ABIE53_002734 | | membrane protease subunit HflC | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS14405 | | RNA polymerase sigma factor RpoE | 0.21 | BPHYT_RS12540 | | membrane protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.61 | QEN71_RS04575 | | RNA polymerase sigma factor RpoE | 0.22 | QEN71_RS06015 | | protease modulator HflC | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.60 | H281DRAFT_04355 | | RNA polymerase, sigma-24 subunit, RpoE | 0.25 | H281DRAFT_00524 | | protease FtsH subunit HflC | — | — |
| Herbaspirillum seropedicae SmR1 | 0.60 | HSERO_RS09625 | | RNA polymerase sigma factor RpoE | 0.36 | HSERO_RS14760 | | membrane protein | — | — |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS08355 | | RNA polymerase sigma factor RpoE | 0.35 | ABCV34_RS02665 | | protease modulator HflC | — | — |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS08330 | | RNA polymerase sigma factor RpoE | 0.26 | ABID97_RS14265 | | protease modulator HflC | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.48 | GFF3339 | | RNA polymerase sigma factor RpoE | 0.25 | GFF4855 | | HflC protein | 0.59 | 84 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_1573 | | RNA polymerase sigma factor RpoE | 0.28 | Ac3H11_1802 | | HflC protein | — | — |
| Variovorax sp. SCN45 | 0.48 | GFF3863 | | RNA polymerase sigma factor RpoE | 0.25 | GFF1003 | | HflC protein | low | > 127 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_2047 | | RNA polymerase sigma factor, sigma-70 family | 0.23 | Echvi_2032 | | HflC protein | low | > 79 |
| Bosea sp. OAE506 | 0.19 | ABIE41_RS07610 | | sigma-70 family RNA polymerase sigma factor | 0.29 | ABIE41_RS12855 | | protease modulator HflC | low | > 77 |
Not shown: 14 genomes with orthologs for B158DRAFT_2180 only; 14 genomes with orthologs for B158DRAFT_1955 only