Conservation of cofitness between Atu0598 and Atu3997 in Agrobacterium fabrum C58

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0598 phosphogluconate dehydratase 1.0 Atu3997 biotin synthetase 0.49 19
Rhizobium sp. OAE497 0.87 ABIE40_RS03190 phosphogluconate dehydratase 0.68 ABIE40_RS21075 biotin synthase BioB low > 107
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS05520 phosphogluconate dehydratase 0.52 HSERO_RS12235 biotin synthase — —
Shewanella sp. ANA-3 0.63 Shewana3_2149 phosphogluconate dehydratase (RefSeq) 0.58 Shewana3_2519 biotin synthase (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS14690 phosphogluconate dehydratase 0.56 ABZR86_RS15840 biotin synthase BioB low > 74
Shewanella oneidensis MR-1 0.63 SO2487 edd 6-phosphogluconate dehydratase (NCBI ptt file) 0.58 SO2740 bioB biotin synthase (NCBI ptt file) — —
Ralstonia solanacearum GMI1000 0.63 RS_RS24620 phosphogluconate dehydratase 0.58 RS_RS01305 biotin synthase low > 80
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS22920 phosphogluconate dehydratase 0.57 ABZR87_RS06265 biotin synthase BioB low > 80
Ralstonia solanacearum UW163 0.62 UW163_RS17125 phosphogluconate dehydratase 0.57 UW163_RS03115 biotin synthase BioB — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS16385 phosphogluconate dehydratase 0.57 RALBFv3_RS10465 biotin synthase BioB low > 76
Ralstonia solanacearum PSI07 0.62 RPSI07_RS07320 phosphogluconate dehydratase 0.58 RPSI07_RS22850 biotin synthase BioB low > 81
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_14370 edd phosphogluconate dehydratase 0.55 OKGIIK_13650 bioB biotin synthase BioB — —
Shewanella loihica PV-4 0.62 Shew_2046 phosphogluconate dehydratase (RefSeq) 0.57 Shew_1719 biotin synthase (RefSeq) — —
Rhodanobacter denitrificans MT42 0.62 LRK55_RS07610 phosphogluconate dehydratase 0.55 LRK55_RS09900 biotin synthase BioB — —
Alteromonas macleodii MIT1002 0.62 MIT1002_02405 Phosphogluconate dehydratase 0.58 MIT1002_01379 Biotin synthase low > 70
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS07880 phosphogluconate dehydratase 0.55 LRK54_RS10260 biotin synthase BioB — —
Escherichia coli BL21 0.62 ECD_01822 6-phosphogluconate dehydratase 0.61 ECD_00742 biotin synthase low > 60
Escherichia coli ECRC102 0.62 NIAGMN_01720 edd phosphogluconate dehydratase 0.61 NIAGMN_04445 bioB biotin synthase BioB — —
Escherichia coli ECRC99 0.62 KEDOAH_01765 edd phosphogluconate dehydratase 0.61 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli ECRC101 0.62 OKFHMN_26340 edd phosphogluconate dehydratase 0.61 OKFHMN_06400 bioB biotin synthase BioB — —
Escherichia fergusonii Becca 0.62 EFB2_02092 Phosphogluconate dehydratase 0.60 EFB2_03330 Biotin synthase low > 86
Escherichia coli BW25113 0.62 b1851 edd phosphogluconate dehydratase (NCBI) 0.61 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECOR38 0.62 HEPCGN_04745 edd phosphogluconate dehydratase 0.61 HEPCGN_01640 bioB biotin synthase BioB low > 85
Escherichia coli Nissle 1917 0.62 ECOLIN_RS10310 phosphogluconate dehydratase 0.60 ECOLIN_RS04130 biotin synthase BioB — —
Escherichia coli ECRC98 0.62 JDDGAC_00915 edd phosphogluconate dehydratase 0.61 JDDGAC_10035 bioB biotin synthase BioB — —
Escherichia coli ECRC101 0.62 MCAODC_19065 edd phosphogluconate dehydratase 0.61 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli ECOR27 0.62 NOLOHH_16850 edd phosphogluconate dehydratase 0.61 NOLOHH_22770 bioB biotin synthase BioB low > 57
Escherichia coli ECRC62 0.62 BNILDI_15645 edd phosphogluconate dehydratase 0.61 BNILDI_21040 bioB biotin synthase BioB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_01878 Phosphogluconate dehydratase 0.61 OHPLBJKB_02938 Biotin synthase low > 73
Phaeobacter inhibens DSM 17395 0.62 PGA1_c28000 phosphogluconate dehydratase Edd 0.67 PGA1_c09120 biotin synthase BioB — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_1109 6-phosphogluconate dehydratase 0.60 Psyr_4687 biotin synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_1109 6-phosphogluconate dehydratase 0.60 Psyr_4687 biotin synthase low > 86
Pseudomonas putida KT2440 0.61 PP_1010 phosphogluconate dehydratase 0.60 PP_0362 Biotin synthase — —
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS37440 phosphogluconate dehydratase 0.55 RR42_RS00940 biotin synthase low > 128
Pseudomonas fluorescens SBW25 0.61 PFLU_RS24330 phosphogluconate dehydratase 0.60 PFLU_RS27650 biotin synthase BioB 0.49 54
Enterobacter asburiae PDN3 0.61 EX28DRAFT_0705 6-phosphogluconate dehydratase (EC 4.2.1.12) 0.60 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS24330 phosphogluconate dehydratase 0.60 PFLU_RS27650 biotin synthase BioB 0.34 22
Pseudomonas stutzeri RCH2 0.61 Psest_0849 6-phosphogluconate dehydratase 0.59 Psest_0411 biotin synthetase low > 67
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF1630 Phosphogluconate dehydratase (EC 4.2.1.12) 0.61 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Rahnella sp. WP5 0.60 EX31_RS16630 phosphogluconate dehydratase 0.61 EX31_RS23695 biotin synthase BioB low > 89
Pseudomonas sp. S08-1 0.60 OH686_02490 phosphogluconate dehydratase 0.60 OH686_10355 biotin synthase low > 80
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02134 phosphogluconate dehydratase 0.53 CCNA_03636 biotin synthase low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF5495 Phosphogluconate dehydratase (EC 4.2.1.12) 0.53 GFF3992 Biotin synthase (EC 2.8.1.6) — —
Pseudomonas simiae WCS417 0.60 PS417_22690 phosphogluconate dehydratase 0.59 PS417_26005 biotin synthase 0.23 80
Caulobacter crescentus NA1000 0.60 CCNA_02134 phosphogluconate dehydratase 0.53 CCNA_03636 biotin synthase low > 66
Klebsiella michiganensis M5al 0.60 BWI76_RS18100 phosphogluconate dehydratase 0.61 BWI76_RS08760 biotin synthase low > 92
Pseudomonas sp. RS175 0.60 PFR28_00561 Phosphogluconate dehydratase 0.59 PFR28_04103 Biotin synthase low > 88
Marinobacter adhaerens HP15 0.60 HP15_2174 6-phosphogluconate dehydratase 0.61 HP15_2486 biotin synthase 0.60 14
Enterobacter sp. TBS_079 0.60 MPMX20_02756 Phosphogluconate dehydratase 0.60 MPMX20_01403 Biotin synthase low > 85
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_03420 phosphogluconate dehydratase 0.60 AO353_07525 biotin synthase low > 101
Serratia liquefaciens MT49 0.60 IAI46_23175 phosphogluconate dehydratase 0.60 IAI46_06525 biotin synthase BioB low > 86
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_1889 Phosphogluconate dehydratase (EC 4.2.1.12) 0.60 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_601 Phosphogluconate dehydratase (EC 4.2.1.12) 0.60 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) — —
Shewanella amazonensis SB2B 0.60 Sama_1810 phosphogluconate dehydratase (RefSeq) 0.60 Sama_1438 biotin synthase (RefSeq) — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_05220 phosphogluconate dehydratase 0.60 AO356_14135 biotin synthase — —
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_2898 Phosphogluconate dehydratase (EC 4.2.1.12) 0.60 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) — —
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.2447.1 Phosphogluconate dehydratase (EC 4.2.1.12) 0.56 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) 0.57 23
Paraburkholderia graminis OAS925 0.58 ABIE53_003517 phosphogluconate dehydratase 0.56 ABIE53_000577 biotin synthase 0.33 102
Lysobacter sp. OAE881 0.58 ABIE51_RS01610 phosphogluconate dehydratase 0.57 ABIE51_RS01140 biotin synthase BioB low > 62
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS16735 phosphogluconate dehydratase 0.56 BPHYT_RS02150 biotin synthase low > 109
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS26920 phosphogluconate dehydratase 0.57 QEN71_RS01085 biotin synthase BioB — —
Acidovorax sp. GW101-3H11 0.56 Ac3H11_2082 Phosphogluconate dehydratase (EC 4.2.1.12) 0.52 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) — —
Variovorax sp. OAS795 0.55 ABID97_RS21300 phosphogluconate dehydratase 0.53 ABID97_RS13955 biotin synthase BioB low > 91
Variovorax sp. SCN45 0.54 GFF6513 Phosphogluconate dehydratase (EC 4.2.1.12) 0.53 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_0354 6-phosphogluconate dehydratase (EC 4.2.1.12) 0.59 Ga0059261_3989 biotin synthase (EC 2.8.1.6) low > 68
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_01480 phosphogluconate dehydratase 0.59 CSW01_05645 biotin synthase low > 62

Not shown: 5 genomes with orthologs for Atu0598 only; 25 genomes with orthologs for Atu3997 only