Conservation of cofitness between Atu0876 and Atu2685 in Agrobacterium fabrum C58

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0876 superoxide dismutase 1.0 Atu2685 aconitate hydratase 0.38 18
Rhizobium sp. OAE497 0.92 ABIE40_RS22300 superoxide dismutase 0.90 ABIE40_RS18275 aconitate hydratase AcnA — —
Sinorhizobium meliloti 1021 0.88 SMc00043 superoxide dismutase Fe protein 0.88 SMc03846 aconitate hydratase — —
Rhodopseudomonas palustris CGA009 0.76 TX73_008710 superoxide dismutase 0.73 TX73_001045 aconitate hydratase AcnA — —
Bosea sp. OAE506 0.69 ABIE41_RS22480 superoxide dismutase 0.79 ABIE41_RS04965 aconitate hydratase AcnA — —
Azospirillum brasilense Sp245 0.57 AZOBR_RS15415 superoxide dismutase 0.64 AZOBR_RS02985 aconitate hydratase — —
Azospirillum sp. SherDot2 0.56 MPMX19_01161 Superoxide dismutase [Fe] 0.65 MPMX19_02045 Aconitate hydratase A — —
Acinetobacter radioresistens SK82 0.51 MPMX26_00996 Superoxide dismutase [Fe] 0.59 MPMX26_00480 Aconitate hydratase A — —
Magnetospirillum magneticum AMB-1 0.49 AMB_RS12630 superoxide dismutase 0.52 AMB_RS18485 aconitate hydratase AcnA — —
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_2851 Superoxide dismutase [Fe] (EC 1.15.1.1) 0.60 Pf6N2E2_2301 Aconitate hydratase (EC 4.2.1.3) — —
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_1779 Superoxide dismutase [Fe] (EC 1.15.1.1) 0.60 PfGW456L13_4052 Aconitate hydratase (EC 4.2.1.3) — —
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_05005 superoxide dismutase 0.60 AO356_02385 aconitate hydratase — —
Pseudomonas sp. RS175 0.49 PFR28_00606 Superoxide dismutase [Fe] 0.61 PFR28_01099 Aconitate hydratase A — —
Pseudomonas simiae WCS417 0.49 PS417_22180 superoxide dismutase 0.61 PS417_07515 aconitate hydratase — —
Rhodospirillum rubrum S1H 0.49 Rru_A1760 Superoxide dismutase (NCBI) 0.63 Rru_A3511 Aconitate hydratase 1 (NCBI) — —
Pseudomonas fluorescens SBW25 0.48 PFLU_RS23805 superoxide dismutase 0.61 PFLU_RS07595 aconitate hydratase AcnA — —
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS23805 superoxide dismutase 0.61 PFLU_RS07595 aconitate hydratase AcnA — —
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_03930 superoxide dismutase 0.59 AO353_00565 aconitate hydratase — —
Pseudomonas putida KT2440 0.48 PP_0915 superoxide dismutase (Fe) 0.59 PP_2112 aconitate hydratase 1 — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS03480 superoxide dismutase 0.50 RR42_RS14490 aconitate hydratase — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS12240 superoxide dismutase 0.50 RPSI07_RS14625 aconitate hydratase AcnA — —
Ralstonia solanacearum UW163 0.48 UW163_RS08570 superoxide dismutase 0.50 UW163_RS11035 aconitate hydratase AcnA — —
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_711 Superoxide dismutase [Fe] (EC 1.15.1.1) 0.60 Pf1N1B4_3888 Aconitate hydratase (EC 4.2.1.3) — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05055 superoxide dismutase 0.50 RALBFv3_RS02690 aconitate hydratase AcnA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4059 Superoxide dismutase 0.60 Psyr_3404 aconitase — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS00705 superoxide dismutase [Fe] 0.50 ABZR87_RS14605 aconitate hydratase AcnA — —
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4059 Superoxide dismutase 0.60 Psyr_3404 aconitase — —
Pseudomonas stutzeri RCH2 0.47 Psest_1164 Superoxide dismutase 0.64 Psest_2521 aconitate hydratase 1 — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.47 CA264_14325 superoxide dismutase 0.11 CA264_10730 aconitate hydratase — —
Pseudomonas sp. S08-1 0.47 OH686_07215 Superoxide dismutase [Fe] 0.60 OH686_02100 aconitate hydratase 1 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4512 Superoxide dismutase [Fe] (EC 1.15.1.1) 0.50 GFF3382 Aconitate hydratase (EC 4.2.1.3) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS00445 superoxide dismutase 0.67 A4249_RS12770 aconitate hydratase AcnA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3619 Superoxide dismutase [Fe] (EC 1.15.1.1) 0.58 GFF2709 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) 0.36 74
Escherichia coli Nissle 1917 0.45 ECOLIN_RS09230 superoxide dismutase [Fe] 0.57 ECOLIN_RS07705 aconitate hydratase AcnA — —
Escherichia fergusonii Becca 0.45 EFB2_02337 Superoxide dismutase [Fe] 0.57 EFB2_02649 Aconitate hydratase A low > 86
Escherichia coli BW25113 0.45 b1656 sodB superoxide dismutase, Fe (NCBI) 0.58 b1276 acnA aconitate hydratase (NCBI) low > 76
Escherichia coli ECRC101 0.45 MCAODC_18005 sodB superoxide dismutase [Fe] 0.57 MCAODC_15690 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC99 0.45 KEDOAH_00705 sodB superoxide dismutase [Fe] 0.57 KEDOAH_26190 acnA aconitate hydratase AcnA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_02069 Superoxide dismutase [Fe] 0.57 OHPLBJKB_02406 Aconitate hydratase A low > 73
Escherichia coli ECRC102 0.45 NIAGMN_00660 sodB superoxide dismutase [Fe] 0.57 NIAGMN_26745 acnA aconitate hydratase AcnA — —
Escherichia coli ECOR38 0.45 HEPCGN_05790 sodB superoxide dismutase [Fe] 0.58 HEPCGN_25625 acnA aconitate hydratase AcnA low > 85
Escherichia coli ECRC98 0.45 JDDGAC_01995 sodB superoxide dismutase [Fe] 0.57 JDDGAC_05120 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC62 0.45 BNILDI_16715 sodB superoxide dismutase [Fe] 0.57 BNILDI_18390 acnA aconitate hydratase AcnA — —
Escherichia coli ECOR27 0.45 NOLOHH_17925 sodB superoxide dismutase [Fe] 0.57 NOLOHH_20240 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC101 0.45 OKFHMN_27405 sodB superoxide dismutase [Fe] 0.57 OKFHMN_02575 acnA aconitate hydratase AcnA — —
Escherichia coli BL21 0.45 ECD_01626 superoxide dismutase, Fe 0.57 ECD_01253 aconitate hydratase 1; aconitase A — —
Variovorax sp. OAS795 0.45 ABID97_RS16940 Fe-Mn family superoxide dismutase 0.49 ABID97_RS08550 aconitate hydratase AcnA — —
Enterobacter asburiae PDN3 0.45 EX28DRAFT_1653 Superoxide dismutase 0.58 EX28DRAFT_0949 aconitate hydratase 1 low > 76
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_1593 Superoxide dismutase 0.50 Echvi_4039 aconitate hydratase 1 low > 79
Lysobacter sp. OAE881 0.45 ABIE51_RS15385 Fe-Mn family superoxide dismutase 0.57 ABIE51_RS11535 aconitate hydratase AcnA — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04108 superoxide dismutase, Fe-Mn family 0.49 H281DRAFT_06606 aconitase — —
Variovorax sp. SCN45 0.44 GFF3506 Superoxide dismutase [Fe] (EC 1.15.1.1) 0.48 GFF3909 Aconitate hydratase (EC 4.2.1.3) low > 127
Paraburkholderia graminis OAS925 0.44 ABIE53_003343 Fe-Mn family superoxide dismutase 0.42 ABIE53_004758 aconitate hydratase — —
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS05845 superoxide dismutase 0.50 HSERO_RS14940 aconitate hydratase — —
Ralstonia solanacearum GMI1000 0.44 RS_RS12665 superoxide dismutase 0.49 RS_RS10065 aconitate hydratase AcnA — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS02840 Fe-Mn family superoxide dismutase 0.50 QEN71_RS17535 aconitate hydratase AcnA — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.2280.1 Manganese superoxide dismutase (EC 1.15.1.1) 0.58 Xcc-8004.2894.1 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) — —
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS15860 superoxide dismutase 0.49 BPHYT_RS33980 aconitate hydratase — —
Marinobacter adhaerens HP15 0.43 HP15_2351 superoxide dismutase, Fe 0.62 HP15_3433 Aconitate hydratase (EC 4.2.1.3) (from data) — —
Shewanella loihica PV-4 0.43 Shew_1834 superoxide dismutase (RefSeq) 0.39 Shew_1822 aconitate hydratase (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS19695 superoxide dismutase 0.10 CA265_RS16405 aconitate hydratase — —
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_10230 superoxide dismutase [Fe] 0.39 CSW01_06745 Fe/S-dependent 2-methylisocitrate dehydratase AcnD — —
Rahnella sp. WP5 0.42 EX31_RS05785 superoxide dismutase [Mn] 0.61 EX31_RS09885 aconitate hydratase AcnA low > 89
Pectobacterium carotovorum WPP14 0.42 HER17_RS21110 superoxide dismutase [Mn] 0.58 HER17_RS09315 aconitate hydratase AcnA — —
Shewanella amazonensis SB2B 0.42 Sama_1920 superoxide dismutase (RefSeq) 0.38 Sama_3296 aconitate hydratase (RefSeq) — —
Shewanella oneidensis MR-1 0.42 SO2881 SodB superoxide dismutase, Fe (NCBI ptt file) 0.39 SO0343 acnA aconitate hydratase 1 (NCBI ptt file) — —
Shewanella sp. ANA-3 0.42 Shewana3_1639 manganese and iron superoxide dismutase (RefSeq) 0.40 Shewana3_3827 aconitate hydratase (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS20755 superoxide dismutase 0.12 ABZR88_RS16750 aconitate hydratase — —
Dickeya dadantii 3937 0.41 DDA3937_RS20960 superoxide dismutase [Mn] 0.55 DDA3937_RS12555 aconitate hydratase AcnA — —
Alteromonas macleodii MIT1002 0.41 MIT1002_01234 Superoxide dismutase [Fe] 0.54 MIT1002_00380 Aconitate hydratase 1 — —
Pantoea sp. MT58 0.40 IAI47_18725 superoxide dismutase [Mn] 0.57 IAI47_09250 aconitate hydratase AcnA — —
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_4151 Superoxide dismutase 0.61 Ga0059261_3296 aconitate hydratase 1 — —
Dickeya dianthicola 67-19 0.40 HGI48_RS00285 superoxide dismutase [Mn] 0.55 HGI48_RS12610 aconitate hydratase AcnA — —
Dickeya dianthicola ME23 0.39 DZA65_RS00285 superoxide dismutase [Mn] 0.55 DZA65_RS13065 aconitate hydratase AcnA — —
Mycobacterium tuberculosis H37Rv 0.30 Rv3846 Superoxide dismutase [FE] SodA 0.54 Rv1475c Probable iron-regulated aconitate hydratase Acn (citrate hydro-lyase) (aconitase) — —

Not shown: 2 genomes with orthologs for Atu0876 only; 23 genomes with orthologs for Atu2685 only