Conservation of cofitness between Atu4641 and Atu2648 in Agrobacterium fabrum C58

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu4641 LysR family transcriptional regulator 1.0 Atu2648 hypothetical protein 0.27 4
Dinoroseobacter shibae DFL-12 0.63 Dshi_3802 transcriptional regulator, LysR family (RefSeq) 0.58 Dshi_3412 protein of unknown function DUF55 (RefSeq) low > 64
Bosea sp. OAE506 0.62 ABIE41_RS01195 hydrogen peroxide-inducible genes activator 0.48 ABIE41_RS05665 EVE domain-containing protein low > 77
Azospirillum sp. SherDot2 0.57 MPMX19_03085 Hydrogen peroxide-inducible genes activator 0.49 MPMX19_02040 hypothetical protein low > 112
Rhizobium sp. OAE497 0.53 ABIE40_RS15045 hydrogen peroxide-inducible genes activator 0.81 ABIE40_RS18045 EVE domain-containing protein low > 107
Rhodopseudomonas palustris CGA009 0.39 TX73_002235 LysR substrate-binding domain-containing protein 0.49 TX73_001315 EVE domain-containing protein low > 86
Sinorhizobium meliloti 1021 0.38 SMc00818 hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) 0.81 SMc03227 hypothetical protein low > 103
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator 0.25 Xcc-8004.1137.1 FIG006231: RNA-binding protein low > 74
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_0159 Transcriptional regulator 0.40 Ga0059261_3162 Uncharacterized conserved protein low > 68
Magnetospirillum magneticum AMB-1 0.34 AMB_RS03045 hydrogen peroxide-inducible genes activator 0.44 AMB_RS21130 EVE domain-containing protein low > 64
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR 0.29 OKGIIK_12230 eVE EVE domain-containing protein low > 52
Rhodospirillum rubrum S1H 0.33 Rru_A0334 Transcriptional Regulator, LysR family (NCBI) 0.40 Rru_A3573 Protein of unknown function DUF589 (NCBI) — —
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS04765 LysR substrate-binding domain-containing protein 0.28 LRK54_RS11665 EVE domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.33 LRK55_RS04545 LysR substrate-binding domain-containing protein 0.28 LRK55_RS11390 EVE domain-containing protein low > 63
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR 0.31 ABZR86_RS12000 EVE domain-containing protein low > 74
Lysobacter sp. OAE881 0.32 ABIE51_RS05475 LysR substrate-binding domain-containing protein 0.23 ABIE51_RS17360 EVE domain-containing protein low > 62
Marinobacter adhaerens HP15 0.32 HP15_308 oxidative stress regulatory protein OxyR 0.26 HP15_2975 protein belonging to uncharacterized protein family UPF0310 low > 73
Ralstonia solanacearum GMI1000 0.31 RS_RS13470 hydrogen peroxide-inducible genes activator 0.26 RS_RS12065 EVE domain-containing protein low > 80
Paraburkholderia graminis OAS925 0.31 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator 0.24 ABIE53_001243 putative RNA-binding protein with PUA-like domain low > 113
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS03470 LysR family transcriptional regulator 0.23 BPHYT_RS04835 hypothetical protein low > 109
Ralstonia solanacearum UW163 0.31 UW163_RS08020 hydrogen peroxide-inducible genes activator 0.26 UW163_RS09155 EVE domain-containing protein — —
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator 0.26 RALBFv3_RS04515 EVE domain-containing protein low > 76
Ralstonia solanacearum PSI07 0.31 RPSI07_RS11690 hydrogen peroxide-inducible genes activator 0.26 RPSI07_RS12860 EVE domain-containing protein low > 81
Azospirillum brasilense Sp245 0.31 AZOBR_RS31340 LysR family transcriptional regulator 0.47 AZOBR_RS00280 ubiquinol-cytochrome C reductase low > 97
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_04673 transcriptional regulator, LysR family 0.24 H281DRAFT_00131 Predicted RNA-binding protein, contains PUA-like domain low > 103
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS17385 LysR family transcriptional regulator 0.26 RR42_RS16155 RNA-binding protein low > 128
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS01255 LysR substrate-binding domain-containing protein 0.25 ABZR87_RS00115 EVE domain-containing protein low > 80
Pseudomonas stutzeri RCH2 0.30 Psest_4191 Transcriptional regulator 0.27 Psest_0168 Uncharacterized conserved protein low > 67
Pseudomonas putida KT2440 0.30 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.28 PP_5205 conserved protein of unknown function low > 96
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS26625 LysR substrate-binding domain-containing protein 0.25 QEN71_RS25165 EVE domain-containing protein low > 153
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0567 Transcriptional regulator 0.28 B158DRAFT_0526 Uncharacterized conserved protein low > 40
Pseudomonas fluorescens FW300-N2E2 0.30 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator 0.26 Pf6N2E2_4474 FIG006231: RNA-binding protein 0.36 17
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0202 transcriptional regulator, LysR family 0.26 Psyr_0315 Protein of unknown function DUF589 low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0202 transcriptional regulator, LysR family 0.26 Psyr_0315 Protein of unknown function DUF589 low > 86
Dechlorosoma suillum PS 0.29 Dsui_0823 transcriptional regulator 0.25 Dsui_0525 hypothetical protein low > 51
Phaeobacter inhibens DSM 17395 0.29 PGA1_78p00040 hydrogen peroxide-inducible genes activator OxyR 0.57 PGA1_c35460 Uncharacterized conserved protein — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.26 PFLU_RS28970 EVE domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.26 PFLU_RS28970 EVE domain-containing protein low > 109
Pseudomonas simiae WCS417 0.28 PS417_27865 LysR family transcriptional regulator 0.25 PS417_27315 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_12385 LysR family transcriptional regulator 0.27 AO356_12985 hypothetical protein low > 104
Pseudomonas sp. RS175 0.28 PFR28_04434 Hydrogen peroxide-inducible genes activator 0.25 PFR28_04327 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.26 Pf1N1B4_2223 FIG006231: RNA-binding protein low > 87
Shewanella sp. ANA-3 0.28 Shewana3_3046 LysR family transcriptional regulator (RefSeq) 0.33 Shewana3_2477 hypothetical protein (RefSeq) 0.67 6
Shewanella oneidensis MR-1 0.28 SO1328 transcriptional regulator, LysR family (NCBI ptt file) 0.35 SO1969 conserved hypothetical protein (NCBI ptt file) low > 76
Variovorax sp. OAS795 0.28 ABID97_RS01570 LysR substrate-binding domain-containing protein 0.25 ABID97_RS00760 EVE domain-containing protein low > 91
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.26 PfGW456L13_890 FIG006231: RNA-binding protein low > 87
Acidovorax sp. GW101-3H11 0.28 Ac3H11_784 Hydrogen peroxide-inducible genes activator 0.22 Ac3H11_2176 FIG006231: RNA-binding protein low > 79
Pseudomonas sp. S08-1 0.28 OH686_13510 Hydrogen peroxide-inducible genes activator 0.28 OH686_11235 Protein of unknown function DUF55 low > 80
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS19680 DNA-binding transcriptional regulator OxyR 0.42 CA265_RS14075 ubiquinol-cytochrome C reductase low > 88
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_09315 LysR family transcriptional regulator 0.27 AO353_08785 hypothetical protein low > 101
Variovorax sp. SCN45 0.27 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR 0.23 GFF3613 Protein of unknown function DUF55 low > 127
Alteromonas macleodii MIT1002 0.27 MIT1002_00881 Morphology and auto-aggregation control protein 0.25 MIT1002_01794 EVE domain protein low > 70
Shewanella amazonensis SB2B 0.26 Sama_0860 LysR family transcriptional regulator (RefSeq) 0.34 Sama_1573 hypothetical protein (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF2803 Hydrogen peroxide-inducible genes activator 0.24 GFF4019 FIG006231: RNA-binding protein low > 90
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_13765 DNA-binding transcriptional regulator OxyR 0.35 CA264_20480 ubiquinol-cytochrome C reductase 0.44 11
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS18535 hydrogen peroxide-inducible genes activator 0.40 ABZR88_RS00920 EVE domain-containing protein low > 71

Not shown: 39 genomes with orthologs for Atu4641 only; 3 genomes with orthologs for Atu2648 only