Conservation of cofitness between Atu4000 and Atu2127 in Agrobacterium fabrum C58

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu4000 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1.0 Atu2127 L-carnitine dehydratase 0.74 11
Rhizobium sp. OAE497 0.69 ABIE40_RS21060 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.81 ABIE40_RS11980 CaiB/BaiF CoA-transferase family protein low > 107
Rhodopseudomonas palustris CGA009 0.62 TX73_015405 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.34 TX73_000305 CaiB/BaiF CoA-transferase family protein low > 86
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_3674 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.52 Ga0059261_2166 Predicted acyl-CoA transferases/carnitine dehydratase low > 68
Magnetospirillum magneticum AMB-1 0.40 AMB_RS13895 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.53 AMB_RS07510 CoA transferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS07530 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.22 CA265_RS08550 carnitine dehydratase low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_02410 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.28 CA264_01655 CoA transferase low > 74
Azospirillum brasilense Sp245 0.37 AZOBR_RS31120 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.54 AZOBR_RS29180 CoA-transferase low > 97
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS10225 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.24 ABZR86_RS14460 CoA transferase low > 74
Rhodanobacter denitrificans MT42 0.35 LRK55_RS03920 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.32 LRK55_RS07155 CaiB/BaiF CoA-transferase family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS04150 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.32 LRK54_RS07425 CoA transferase low > 59
Marinobacter adhaerens HP15 0.33 HP15_2925 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.29 HP15_2609 acyl-CoA transferase/carnitine dehydratase low > 73
Ralstonia solanacearum PSI07 0.33 RPSI07_RS16705 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.51 RPSI07_RS20015 CoA transferase low > 81
Paraburkholderia graminis OAS925 0.33 ABIE53_000580 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.52 ABIE53_002964 crotonobetainyl-CoA:carnitine CoA-transferase CaiB-like acyl-CoA transferase low > 113
Ralstonia solanacearum GMI1000 0.33 RS_RS07430 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.50 RS_RS04000 CoA transferase low > 80
Ralstonia solanacearum UW163 0.33 UW163_RS14150 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.51 UW163_RS00365 CoA transferase — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS00815 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.51 RALBFv3_RS13205 CoA transferase low > 76
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS12335 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.50 ABZR87_RS09285 CaiB/BaiF CoA-transferase family protein low > 80
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.53 BPHYT_RS31850 CoA-transferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_02094 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.52 H281DRAFT_04444 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB low > 103
Pseudomonas putida KT2440 0.32 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.53 PP_0159 putative CoA-transferase family III low > 96
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2377 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.54 Pf1N1B4_1815 L-carnitine dehydratase/bile acid-inducible protein F low > 87
Pseudomonas stutzeri RCH2 0.32 Psest_0306 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.52 Psest_3829 Predicted acyl-CoA transferases/carnitine dehydratase low > 67
Pseudomonas sp. S08-1 0.32 OH686_10850 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.54 OH686_11705 Uncharacterized protein low > 80
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS12250 adenosylmethionine--8-amino-7-oxononanoate aminotransferase 0.25 HSERO_RS18350 CoA transferase low > 78
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_1044 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.54 PfGW456L13_553 L-carnitine dehydratase/bile acid-inducible protein F low > 87
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.53 Psyr_5013 L-carnitine dehydratase/bile acid-inducible protein F low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.53 Psyr_5013 L-carnitine dehydratase/bile acid-inducible protein F low > 86
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13570 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.54 AO356_10845 succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4631 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.54 Pf6N2E2_4035 L-carnitine dehydratase/bile acid-inducible protein F low > 103
Pseudomonas simiae WCS417 0.31 PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.54 PS417_00585 CoA-transferase low > 88
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_08045 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.53 AO353_11105 CoA-transferase low > 101
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.54 PFLU_RS00570 CoA transferase low > 109
Pseudomonas fluorescens SBW25 0.31 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.54 PFLU_RS00570 CoA transferase low > 109
Pseudomonas sp. RS175 0.31 PFR28_04208 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.54 PFR28_04729 Acetyl-CoA:oxalate CoA-transferase low > 88
Caulobacter crescentus NA1000 0.30 CCNA_01648 adenosylmethionine-8-amino-7-oxononanoate 0.30 CCNA_03677 CoA-transferase family III protein low > 66
Caulobacter crescentus NA1000 Δfur 0.30 CCNA_01648 adenosylmethionine-8-amino-7-oxononanoate 0.30 CCNA_03677 CoA-transferase family III protein low > 67
Dickeya dianthicola 67-19 0.30 HGI48_RS08670 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 HGI48_RS00090 formyl-CoA transferase low > 71
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS00925 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA 0.50 RR42_RS15155 CoA-transferase low > 128
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF670 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.14 GFF208 Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-) low > 78
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS01100 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.51 QEN71_RS04980 CaiB/BaiF CoA-transferase family protein — —
Variovorax sp. SCN45 0.30 GFF145 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.49 GFF3432 L-carnitine dehydratase/bile acid-inducible protein F low > 127
Castellaniella sp019104865 MT123 0.30 ABCV34_RS15300 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.52 ABCV34_RS01800 CaiB/BaiF CoA-transferase family protein low > 48
Rahnella sp. WP5 0.30 EX31_RS23690 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.32 EX31_RS16690 CoA transferase low > 89
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_2790 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.23 Echvi_1686 Predicted acyl-CoA transferases/carnitine dehydratase low > 79
Acinetobacter radioresistens SK82 0.29 MPMX26_02454 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.49 MPMX26_01270 Acetyl-CoA:oxalate CoA-transferase — —
Dickeya dianthicola ME23 0.29 DZA65_RS08960 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.21 DZA65_RS00105 formyl-CoA transferase low > 75
Escherichia coli BW25113 0.29 b0774 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) 0.31 b2371 yfdE putative enzyme (VIMSS) low > 76
Dickeya dadantii 3937 0.29 DDA3937_RS08505 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 DDA3937_RS21175 formyl-CoA transferase low > 74
Variovorax sp. OAS795 0.29 ABID97_RS16265 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.49 ABID97_RS03210 CaiB/BaiF CoA-transferase family protein low > 91
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_02939 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.31 OHPLBJKB_01350 Acetyl-CoA:oxalate CoA-transferase low > 73
Escherichia coli BL21 0.29 ECD_00741 7,8-diaminopelargonic acid synthase, PLP-dependent 0.31 ECD_02281 acetyl-CoA:oxalate CoA-transferase low > 60
Escherichia coli ECOR38 0.29 HEPCGN_01635 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 HEPCGN_21625 yfdE CoA:oxalate CoA-transferase low > 85
Escherichia coli Nissle 1917 0.28 ECOLIN_RS04125 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 ECOLIN_RS13645 CoA:oxalate CoA-transferase — —
Escherichia fergusonii Becca 0.28 EFB2_03331 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.31 EFB2_01503 Acetyl-CoA:oxalate CoA-transferase low > 86
Dechlorosoma suillum PS 0.28 Dsui_2880 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.28 Dsui_0037 putative acyl-CoA transferase/carnitine dehydratase low > 51
Escherichia coli ECRC98 0.28 JDDGAC_10040 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 JDDGAC_26380 yfdE CoA:oxalate CoA-transferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3993 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.49 GFF2926 L-carnitine dehydratase/bile acid-inducible protein F low > 90
Escherichia coli ECRC99 0.28 KEDOAH_21505 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 KEDOAH_05805 yfdE CoA:oxalate CoA-transferase — —
Escherichia coli ECRC62 0.28 BNILDI_21045 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 BNILDI_12955 yfdE CoA:oxalate CoA-transferase — —
Escherichia coli ECOR27 0.28 NOLOHH_22775 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 NOLOHH_14100 yfdE CoA:oxalate CoA-transferase low > 57
Acidovorax sp. GW101-3H11 0.28 Ac3H11_3828 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.49 Ac3H11_3532 L-carnitine dehydratase/bile acid-inducible protein F low > 79
Shewanella loihica PV-4 0.27 Shew_1718 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.15 Shew_2674 crotonobetainyl-CoA:carnitine CoA-transferase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c09150 adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA 0.52 PGA1_c27870 CoA-transferase, family III low > 62
Shewanella amazonensis SB2B 0.26 Sama_1437 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.50 Sama_3300 acyl-CoA transferase/carnitine dehydratase (RefSeq) — —
Mycobacterium tuberculosis H37Rv 0.26 Rv1568 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA 0.19 Rv3272 Conserved hypothetical protein low > 58

Not shown: 24 genomes with orthologs for Atu4000 only; 6 genomes with orthologs for Atu2127 only