| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | 1.0 | Atu0050 | | two component response regulator | 0.52 | 12 |
| Rhizobium sp. OAE497 | 0.86 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.82 | ABIE40_RS19505 | | ActR/PrrA/RegA family redox response regulator transcription factor | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.82 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | 0.78 | SMc02584 | | transcriptional regulator | — | — |
| Rhodopseudomonas palustris CGA009 | 0.70 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.67 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | low | > 86 |
| Bosea sp. OAE506 | 0.69 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | ABIE41_RS03875 | | ActR/PrrA/RegA family redox response regulator transcription factor | low | > 77 |
| Azospirillum sp. SherDot2 | 0.67 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.53 | MPMX19_05623 | | Photosynthetic apparatus regulatory protein RegA | low | > 112 |
| Azospirillum brasilense Sp245 | 0.67 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | 0.52 | AZOBR_RS03415 | | chemotaxis protein CheY | low | > 97 |
| Caulobacter crescentus NA1000 Δfur | 0.67 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.48 | CCNA_00247 | | two-component receiver protein SpdR | low | > 67 |
| Caulobacter crescentus NA1000 | 0.67 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.48 | CCNA_00247 | | two-component receiver protein SpdR | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.65 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.50 | A4249_RS15075 | | ActR/PrrA/RegA family redox response regulator transcription factor | low | > 48 |
| Dinoroseobacter shibae DFL-12 | 0.64 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.65 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.64 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | 0.63 | PGA1_c35390 | | photosynthetic apparatus regulatory protein RegA | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.63 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.32 | Ga0059261_1560 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | low | > 68 |
| Dechlorosoma suillum PS | 0.54 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.43 | Dsui_1180 | | response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein | low | > 51 |
| Dyella japonica UNC79MFTsu3.2 | 0.54 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | ABZR86_RS10115 | | response regulator transcription factor | — | — |
| Herbaspirillum seropedicae SmR1 | 0.54 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | 0.35 | HSERO_RS12290 | | chemotaxis protein CheY | — | — |
| Marinobacter adhaerens HP15 | 0.53 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.30 | HP15_3981 | | two component transcriptional regulator, Fis family | low | > 73 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.34 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | — | — |
| Burkholderia phytofirmans PsJN | 0.53 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | 0.34 | BPHYT_RS01625 | | chemotaxis protein CheY | low | > 109 |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.35 | ABZR87_RS05135 | | response regulator transcription factor | — | — |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.36 | RS_RS00200 | | DNA-binding response regulator | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | LRK54_RS04040 | | response regulator transcription factor | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | LRK55_RS03810 | | response regulator transcription factor | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | OKGIIK_10900 | | two-component system response regulator | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.33 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | low | > 74 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.33 | ABIE51_RS09795 | | response regulator transcription factor | — | — |
| Pseudomonas sp. RS175 | 0.53 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | — | — |
| Pseudomonas simiae WCS417 | 0.53 | PS417_16510 | | Clp protease ClpX | 0.42 | PS417_04100 | | chemotaxis protein CheY | — | — |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.41 | Psest_3338 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.53 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.31 | B158DRAFT_1932 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | low | > 40 |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.36 | RPSI07_RS23750 | | DNA-binding response regulator | 0.58 | 5 |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.37 | RALBFv3_RS09615 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.37 | UW163_RS03965 | | DNA-binding response regulator | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | Psyr_4230 | | Helix-turn-helix, Fis-type | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | Psyr_4230 | | Helix-turn-helix, Fis-type | low | > 86 |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.35 | QEN71_RS00325 | | response regulator transcription factor | — | — |
| Variovorax sp. SCN45 | 0.52 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.35 | GFF5672 | | Dna binding response regulator PrrA (RegA) | low | > 127 |
| Shewanella loihica PV-4 | 0.52 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.34 | Shew_3342 | | two component Fis family transcriptional regulator (RefSeq) | low | > 60 |
| Acidovorax sp. GW101-3H11 | 0.52 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.33 | Ac3H11_3147 | | Dna binding response regulator PrrA (RegA) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | PfGW456L13_5048 | | Dna binding response regulator PrrA (RegA) | low | > 87 |
| Pseudomonas putida KT2440 | 0.52 | PP_4008 | | ATP-dependent serine protease | 0.42 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | PFLU_RS04140 | | response regulator transcription factor | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS17105 | | Clp protease ClpX | 0.35 | RR42_RS01085 | | chemotaxis protein CheY | low | > 128 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | PFLU_RS04140 | | response regulator transcription factor | low | > 109 |
| Pseudomonas sp. S08-1 | 0.52 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | OH686_08680 | | Dna binding response regulator PrrA (RegA) | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | AO356_07205 | | chemotaxis protein CheY | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | AO353_05335 | | chemotaxis protein CheY | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | low | > 87 |
| Variovorax sp. OAS795 | 0.52 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.33 | ABID97_RS07610 | | response regulator transcription factor | low | > 91 |
| Shewanella amazonensis SB2B | 0.52 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | 0.32 | Sama_3186 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.32 | Shewana3_3707 | | response regulator receiver protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.51 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | 0.32 | SO4172 | | DNA-binding response regulator (NCBI ptt file) | low | > 76 |
Not shown: 36 genomes with orthologs for Atu1364 only; 1 genomes with orthologs for Atu0050 only