| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 1.0 | ABZR87_RS05320 | | efflux transporter outer membrane subunit | 0.89 | 2 |
| Ralstonia solanacearum PSI07 | 0.76 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | 0.88 | RPSI07_RS23910 | | multidrug transporter | 0.97 | 2 |
| Ralstonia solanacearum UW163 | 0.75 | UW163_RS04130 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.88 | UW163_RS04140 | | multidrug transporter | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.75 | RALBFv3_RS09450 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.88 | RALBFv3_RS09440 | | multidrug transporter | 1.00 | 1 |
| Ralstonia solanacearum GMI1000 | 0.73 | RS_RS00050 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.87 | RS_RS00040 | | multidrug transporter | 0.97 | 2 |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS02415 | | hemolysin D | 0.52 | HSERO_RS02405 | | multidrug transporter | 0.91 | 2 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS20645 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.53 | RR42_RS20655 | | multidrug transporter | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.47 | GFF3839 | | RND efflux system, membrane fusion protein CmeA | 0.35 | GFF3841 | | RND efflux system, outer membrane lipoprotein CmeC | low | > 90 |
| Variovorax sp. OAS795 | 0.47 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | ABID97_RS00330 | | efflux transporter outer membrane subunit | 0.88 | 3 |
| Variovorax sp. SCN45 | 0.47 | GFF3726 | | RND efflux system, membrane fusion protein | 0.37 | GFF5991 | | Efflux transport system, outer membrane factor (OMF) lipoprotein | low | > 127 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS06780 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.28 | BWI76_RS27700 | | multidrug transporter | low | > 92 |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | 0.42 | QEN71_RS29860 | | efflux transporter outer membrane subunit | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.38 | Ac3H11_4447 | | RND efflux system, outer membrane lipoprotein CmeC | 0.62 | 2 |
| Escherichia coli ECRC101 | 0.44 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | MCAODC_26915 | ibeB | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | low | > 87 |
| Escherichia coli BL21 | 0.44 | ECD_00414 | | multidrug efflux system | 0.34 | ECD_00533 | | copper/silver efflux system, outer membrane component | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | 0.34 | OHPLBJKB_03137 | | Cation efflux system protein CusC | low | > 73 |
| Escherichia fergusonii Becca | 0.44 | EFB2_03595 | | Multidrug efflux pump subunit AcrA | 0.34 | EFB2_03522 | | Cation efflux system protein CusC | low | > 86 |
| Escherichia coli ECRC100 | 0.44 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | OKFHMN_07700 | ibeB | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | low | > 80 |
| Escherichia coli Nissle 1917 | 0.44 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | ECOLIN_RS03130 | | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | — | — |
| Escherichia coli ECRC99 | 0.44 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | KEDOAH_20270 | ibeB | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | — | — |
| Escherichia coli ECRC62 | 0.44 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | BNILDI_22090 | cusC | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | low | > 75 |
| Escherichia coli BW25113 | 0.44 | b0463 | acrA | multidrug efflux system (NCBI) | 0.34 | b0572 | cusC | copper/silver efflux system, outer membrane component (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | HEPCGN_00590 | ibeB | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | low | > 87 |
| Escherichia coli ECOR27 | 0.44 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | NOLOHH_24080 | cusC | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | low | > 75 |
| Escherichia coli ECRC98 | 0.44 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | JDDGAC_11345 | ibeB | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | low | > 86 |
| Escherichia coli ECRC102 | 0.44 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.34 | NIAGMN_05755 | ibeB | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC | — | — |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | 0.30 | MPMX20_02318 | | Cation efflux system protein CusC | low | > 85 |
| Pantoea sp. MT58 | 0.43 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.20 | IAI47_12395 | | efflux transporter outer membrane subunit | low | > 76 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | 0.30 | DDA3937_RS14115 | | efflux transporter outer membrane subunit | low | > 74 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | 0.36 | IAI46_16730 | | efflux transporter outer membrane subunit | low | > 86 |
| Rahnella sp. WP5 | 0.43 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | 0.37 | EX31_RS13330 | | efflux transporter outer membrane subunit | low | > 89 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | 0.31 | DZA65_RS03600 | | efflux transporter outer membrane subunit | low | > 75 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | 0.31 | HGI48_RS03490 | | Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | low | > 71 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_12590 | | RND transporter | 0.41 | PS417_06765 | | multidrug transporter | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF2117 | | RND efflux system, membrane fusion protein CmeA | 0.34 | GFF4245 | | RND efflux system, outer membrane lipoprotein CmeC | low | > 78 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | PFLU_RS06800 | | AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | PFLU_RS06800 | | AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor | low | > 109 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | 0.40 | Xcc-8004.1795.1 | | RND efflux system, outer membrane lipoprotein CmeC | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS16175 | | hemolysin D | 0.41 | BPHYT_RS16165 | | multidrug transporter | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.42 | DVU2817 | acrA | multidrug resistance protein (TIGR) | 0.32 | DVU2815 | | outer membrane efflux protein (TIGR) | low | > 55 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | 0.31 | EX28DRAFT_1166 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_2955 | | RND efflux system, membrane fusion protein CmeA | 0.42 | PfGW456L13_4582 | | RND efflux system, outer membrane lipoprotein CmeC | low | > 87 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_04171 | | membrane fusion protein, multidrug efflux system | 0.40 | H281DRAFT_04169 | | outer membrane protein, multidrug efflux system | 0.70 | 2 |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | ABZR86_RS18290 | | AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_28725 | | RND transporter | 0.43 | AO356_30435 | | multidrug transporter | — | — |
| Pseudomonas sp. RS175 | 0.40 | PFR28_02462 | | Multidrug resistance protein MexA | 0.41 | PFR28_00630 | | putative efflux pump outer membrane protein TtgC | low | > 88 |
| Pseudomonas putida KT2440 | 0.40 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | 0.40 | PP_1384 | | Probable efflux pump outer membrane protein TtgC | 0.94 | 2 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_1660 | | RND efflux system, membrane fusion protein CmeA | 0.42 | Pf6N2E2_1948 | | RND efflux system, outer membrane lipoprotein CmeC | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_26840 | | RND transporter | 0.40 | AO353_17290 | | multidrug transporter | 0.23 | 40 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_16045 | | Multidrug efflux system, membrane fusion component | 0.38 | OH686_16055 | | Multidrug efflux system, outer membrane factor lipoprotein | 0.65 | 29 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_4007 | | Secretion protein HlyD | 0.42 | Psyr_4009 | | RND efflux system, outer membrane lipoprotein, NodT | 0.86 | 2 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_4007 | | Secretion protein HlyD | 0.42 | Psyr_4009 | | RND efflux system, outer membrane lipoprotein, NodT | low | > 86 |
| Rhodopseudomonas palustris CGA009 | 0.39 | TX73_014170 | | efflux RND transporter periplasmic adaptor subunit | 0.17 | TX73_013300 | | efflux transporter outer membrane subunit | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_4773 | | RND efflux system, membrane fusion protein CmeA | 0.42 | Pf1N1B4_3245 | | RND efflux system, outer membrane lipoprotein, NodT family | — | — |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_0309 | | RND family efflux transporter, MFP subunit | 0.40 | Psest_0311 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | 0.67 | 2 |
| Shewanella sp. ANA-3 | 0.38 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | 0.31 | Shewana3_4297 | | copper/silver efflux system outer membrane protein CusC (RefSeq) | low | > 73 |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A2050 | | Secretion protein HlyD (NCBI) | 0.38 | Rru_A2052 | | RND efflux system, outer membrane lipoprotein, NodT (NCBI) | low | > 58 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | 0.33 | MPMX26_00688 | | Outer membrane protein OprM | 0.98 | 1 |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.39 | CCNA_00849 | | outer membrane efflux protein | 0.83 | 2 |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.39 | CCNA_00849 | | outer membrane efflux protein | 0.79 | 2 |
| Sphingomonas koreensis DSMZ 15582 | 0.34 | Ga0059261_0560 | | RND family efflux transporter, MFP subunit | 0.26 | Ga0059261_0558 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | low | > 68 |
| Dechlorosoma suillum PS | 0.34 | Dsui_3181 | | RND family efflux transporter, MFP subunit | 0.30 | Dsui_3183 | | efflux transporter, outer membrane factor lipoprotein, NodT family | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | 0.34 | ABCV34_RS04220 | | efflux transporter outer membrane subunit | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.30 | DvMF_2164 | | efflux transporter, RND family, MFP subunit (RefSeq) | 0.24 | DvMF_2162 | | RND efflux system, outer membrane lipoprotein, NodT family (RefSeq) | 0.92 | 2 |
| Bacteroides stercoris CC31F | 0.24 | HMPREF1181_RS04580 | | efflux RND transporter periplasmic adaptor subunit | 0.19 | HMPREF1181_RS04570 | | efflux transporter outer membrane subunit | 0.62 | 1 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.22 | BT0304 | | acriflavine resistance protein A precursor (NCBI ptt file) | 0.23 | BT0306 | | outer membrane protein oprM precursor (NCBI ptt file) | low | > 81 |
| Phocaeicola dorei CL03T12C01 | 0.21 | ABI39_RS18720 | | efflux RND transporter periplasmic adaptor subunit | 0.21 | ABI39_RS18730 | | efflux transporter outer membrane subunit | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS05165 | | efflux RND transporter periplasmic adaptor subunit | 0.21 | HMPREF1058_RS05155 | | efflux transporter outer membrane subunit | 0.66 | 29 |
Not shown: 21 genomes with orthologs for ABZR87_RS05310 only; 3 genomes with orthologs for ABZR87_RS05320 only