Conservation of cofitness between Shew_2934 and Shew_1361 in Shewanella loihica PV-4

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 1.0 Shew_1361 fliS flagellar protein FliS (RefSeq) 0.56 20
Shewanella amazonensis SB2B 0.94 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.82 Sama_2302 fliS flagellar protein FliS (RefSeq) low > 62
Shewanella sp. ANA-3 0.93 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.84 Shewana3_1337 fliS flagellar protein FliS (RefSeq) low > 73
Shewanella oneidensis MR-1 0.93 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.83 SO3233 fliS flagellar protein FliS (NCBI ptt file) low > 76
Pantoea sp. MT58 0.82 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 IAI47_08135 flagellar export chaperone FliS low > 76
Erwinia tracheiphila SCR3 0.82 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 LU632_RS13845 fliS flagellar export chaperone FliS — —
Escherichia coli BW25113 0.81 b0636 ybeA hypothetical protein (NCBI) 0.32 b1925 fliS flagellar protein FliS (NCBI) low > 76
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.52 CSW01_10675 flagellar protein FliS low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.33 OHPLBJKB_01804 Flagellar secretion chaperone FliS — —
Escherichia coli Nissle 1917 0.81 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ECOLIN_RS10990 flagellar export chaperone FliS — —
Dickeya dianthicola 67-19 0.81 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 HGI48_RS13395 flagellar export chaperone FliS — —
Escherichia coli ECOR38 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 HEPCGN_04120 fliS flagellar export chaperone FliS low > 85
Escherichia coli ECOR27 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 NOLOHH_16385 fliS flagellar export chaperone FliS — —
Escherichia coli ECRC102 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 NIAGMN_02285 fliS flagellar export chaperone FliS — —
Escherichia coli ECRC62 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 BNILDI_15175 fliS flagellar export chaperone FliS — —
Escherichia coli ECRC101 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 OKFHMN_25765 fliS flagellar export chaperone FliS — —
Escherichia fergusonii Becca 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.33 EFB2_02020 Flagellar secretion chaperone FliS low > 86
Escherichia coli ECRC99 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 KEDOAH_02325 fliS flagellar export chaperone FliS — —
Escherichia coli ECRC98 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 JDDGAC_00355 fliS flagellar export chaperone FliS — —
Escherichia coli ECRC101 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 MCAODC_19625 fliS flagellar export chaperone FliS — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 HER17_RS08300 flagellar export chaperone FliS low > 75
Dickeya dianthicola ME23 0.80 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 DZA65_RS13880 flagellar export chaperone FliS low > 75
Dickeya dadantii 3937 0.80 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 DDA3937_RS13350 flagellar export chaperone FliS — —
Rahnella sp. WP5 0.80 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 EX31_RS09465 flagellar export chaperone FliS low > 89
Serratia liquefaciens MT49 0.80 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 IAI46_15800 flagellar export chaperone FliS low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.40 GFF4027 Flagellar biosynthesis protein FliS low > 78
Enterobacter sp. TBS_079 0.79 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.38 MPMX20_02856 Flagellar secretion chaperone FliS low > 85
Enterobacter asburiae PDN3 0.79 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.35 EX28DRAFT_0621 flagellar biosynthetic protein FliS — —
Alteromonas macleodii MIT1002 0.76 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.35 MIT1002_01057 Flagellar protein FliS — —
Marinobacter adhaerens HP15 0.61 HP15_604 conserved hypothetical protein CHP00246 0.39 HP15_2368 flagellar protein FliS low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4366 Protein of unknown function DUF163 0.40 Psyr_3463 Flagellar protein FliS low > 86
Pseudomonas putida KT2440 0.60 PP_4808 23S rRNA m3psi1915 methyltransferase 0.40 PP_4375 flagellar chaperone, inhibits premature FliC assembly low > 96
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4366 Protein of unknown function DUF163 0.40 Psyr_3463 Flagellar protein FliS — —
Pseudomonas simiae WCS417 0.60 PS417_24730 50S rRNA methyltransferase 0.42 PS417_19835 flagellar biosynthesis protein FliS — —
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 PFLU_RS21805 flagellar export chaperone FliS low > 109
Pseudomonas fluorescens SBW25 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 PFLU_RS21805 flagellar export chaperone FliS low > 109
Pseudomonas sp. RS175 0.60 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.47 PFR28_00826 Flagellar secretion chaperone FliS low > 88
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_06480 50S rRNA methyltransferase 0.40 AO353_18650 flagellar export chaperone FliS low > 101
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.46 Pf6N2E2_2599 Flagellar biosynthesis protein FliS low > 103
Pseudomonas sp. S08-1 0.59 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.46 OH686_02865 flagellar protein FliS low > 80
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_15305 50S rRNA methyltransferase 0.46 AO356_03865 flagellar export chaperone FliS low > 104
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.41 Pf1N1B4_3597 Flagellar biosynthesis protein FliS — —
Pseudomonas stutzeri RCH2 0.57 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.40 Psest_2504 flagellar biosynthetic protein FliS low > 67
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 OKGIIK_02720 fliS flagellar export chaperone FliS low > 52
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 ABZR86_RS20140 flagellar export chaperone FliS low > 74
Rhodanobacter denitrificans MT42 0.52 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 LRK55_RS13210 flagellar export chaperone FliS low > 63
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 LRK54_RS13470 flagellar export chaperone FliS low > 59
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 QEN71_RS28785 flagellar export chaperone FliS low > 153
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS04710 50S rRNA methyltransferase 0.32 RR42_RS23640 flagellar biosynthesis protein FliS low > 128
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.36 BPHYT_RS18765 flagellar biosynthesis protein FliS low > 109
Paraburkholderia graminis OAS925 0.49 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.36 ABIE53_000072 flagellar protein FliS — —
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.35 HSERO_RS10340 flagellar biosynthesis protein FliS low > 78
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 RPSI07_RS01505 flagellar export chaperone FliS low > 81
Ralstonia solanacearum GMI1000 0.49 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 RS_RS19005 flagellar export chaperone FliS — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.36 H281DRAFT_05788 flagellar protein FliS low > 103
Lysobacter sp. OAE881 0.49 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 ABIE51_RS16735 flagellar export chaperone FliS low > 62
Castellaniella sp019104865 MT123 0.48 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 ABCV34_RS05620 flagellar export chaperone FliS low > 48
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ABZR87_RS22165 flagellar export chaperone FliS low > 80
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 RALBFv3_RS21620 flagellar export chaperone FliS low > 76
Ralstonia solanacearum UW163 0.48 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 UW163_RS17570 flagellar export chaperone FliS — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.29 Ac3H11_1401 Flagellar biosynthesis protein FliS low > 79
Variovorax sp. SCN45 0.46 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.33 GFF5755 Flagellar biosynthesis protein FliS low > 127
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.40 Xcc-8004.2793.1 Flagellar biosynthesis protein FliS — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.34 GFF1447 Flagellar biosynthesis protein FliS low > 90
Dechlorosoma suillum PS 0.44 Dsui_0451 hypothetical protein 0.34 Dsui_1780 flagellar biosynthetic protein FliS low > 51

Not shown: 30 genomes with orthologs for Shew_2934 only; 1 genomes with orthologs for Shew_1361 only