Conservation of cofitness between b3447 and b3578 in Escherichia coli BW25113

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3447 ggt gamma-glutamyltranspeptidase periplasmic precursor (NCBI) 1.0 b3578 yiaN predicted transporter (NCBI) 0.17 18
Escherichia coli ECRC62 1.00 BNILDI_02915 ggt gamma-glutamyltransferase 1.00 BNILDI_03720 yiaN 2,3-diketo-L-gulonate transporter large permease YiaN
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00256 Glutathione hydrolase proenzyme 1.00 OHPLBJKB_00126 Sialic acid TRAP transporter large permease protein SiaM low > 73
Escherichia coli ECOR27 1.00 NOLOHH_08590 ggt gamma-glutamyltransferase 1.00 NOLOHH_07825 yiaN 2,3-diketo-L-gulonate transporter large permease YiaN low > 57
Escherichia coli BL21 1.00 ECD_03296 gamma-glutamyltranspeptidase 1.00 ECD_03430 2,3-diketo-L-gulonate TRAP transporter large permease protein low > 60
Escherichia coli ECOR38 0.98 HEPCGN_15620 ggt gamma-glutamyltransferase 0.99 HEPCGN_14770 yiaN 2,3-diketo-L-gulonate transporter large permease YiaN low > 85
Escherichia fergusonii Becca 0.98 EFB2_00375 Glutathione hydrolase proenzyme 0.82 EFB2_00228 Sialic acid TRAP transporter large permease protein SiaM low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS19715 gamma-glutamyltransferase 0.82 ECOLIN_RS20465 2,3-diketo-L-gulonate TRAP transporter large permease YiaN low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF561 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.84 GFF431 2,3-diketo-L-gulonate TRAP transporter large permease protein yiaN low > 78
Enterobacter sp. TBS_079 0.89 MPMX20_04323 Glutathione hydrolase proenzyme 0.34 MPMX20_04347 C4-dicarboxylate TRAP transporter large permease protein DctM low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS26275 gamma-glutamyltransferase 0.29 BWI76_RS24135 c4-dicarboxylate permease low > 92
Pantoea sp. MT58 0.79 IAI47_01620 gamma-glutamyltransferase 0.33 IAI47_03220 TRAP transporter large permease low > 76
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS05455 gamma-glutamyltranspeptidase 0.30 HSERO_RS04250 C4-dicarboxylate ABC transporter permease low > 78
Azospirillum sp. SherDot2 0.58 MPMX19_05752 Glutathione hydrolase proenzyme 0.52 MPMX19_03528 Sialic acid TRAP transporter large permease protein SiaM low > 112
Castellaniella sp019104865 MT123 0.57 ABCV34_RS11415 gamma-glutamyltransferase 0.56 ABCV34_RS11535 TRAP transporter large permease subunit low > 48
Acidovorax sp. GW101-3H11 0.57 Ac3H11_1090 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.58 Ac3H11_3520 TRAP-type C4-dicarboxylate transport system, large permease component low > 79
Shewanella loihica PV-4 0.55 Shew_2158 gamma-glutamyltransferase (RefSeq) 0.21 Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) low > 60
Rhodospirillum rubrum S1H 0.55 Rru_A0385 Gamma-glutamyltransferase (NCBI) 0.27 Rru_A3676 TRAP dicarboxylate transporter, DctM subunit (NCBI) low > 58
Shewanella amazonensis SB2B 0.54 Sama_1566 gamma-glutamyltransferase (RefSeq) 0.22 Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component (from data) low > 62
Shewanella oneidensis MR-1 0.54 SO1952 ggt-2 gamma-glutamyltranspeptidase (NCBI ptt file) 0.25 SO3136 dctM C4-dicarboxylate transport protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.53 Shewana3_2487 gamma-glutamyltransferase 1 (RefSeq) 0.24 Shewana3_1414 TRAP dicarboxylate transporter, DctM subunit (RefSeq) low > 73
Marinobacter adhaerens HP15 0.51 HP15_1357 gamma-glutamyltranspeptidase periplasmic precursor 0.23 HP15_4074 C4-dicarboxylate transport system (permease large protein) low > 73
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2377 gamma-glutamyltranspeptidase 0.15 B158DRAFT_0227 TRAP transporter, DctM subunit low > 40
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_22255 gamma-glutamyltranspeptidase 0.57 AO356_25640 L-dehydroascorbate transporter large permease subunit low > 104
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 0.31 Psyr_0898 TRAP dicarboxylate transporter, DctM subunit low > 86
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_313 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.56 Pf6N2E2_1302 TRAP-type C4-dicarboxylate transport system, large permease component low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 0.31 Psyr_0898 TRAP dicarboxylate transporter, DctM subunit low > 86
Pseudomonas sp. RS175 0.46 PFR28_02593 Glutathione hydrolase proenzyme 0.57 PFR28_01613 Sialic acid TRAP transporter large permease protein SiaM 0.35 35
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS13685 gamma-glutamyltransferase 0.31 PFLU_RS19305 TRAP transporter large permease low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS13685 gamma-glutamyltransferase 0.31 PFLU_RS19305 TRAP transporter large permease low > 109
Variovorax sp. OAS795 0.45 ABID97_RS09895 gamma-glutamyltransferase 0.54 ABID97_RS26070 TRAP transporter large permease subunit
Pseudomonas simiae WCS417 0.45 PS417_13045 gamma-glutamyltranspeptidase 0.31 PS417_17380 membrane protein low > 88
Sinorhizobium meliloti 1021 0.45 SM_b20585 gamma-glutamyltranspeptidase 0.52 SM_b20035 ABC transporter permease low > 103
Variovorax sp. SCN45 0.45 GFF3077 Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13) 0.52 GFF1516 TRAP-type C4-dicarboxylate transport system, large permease component low > 127
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS19795 gamma-glutamyltransferase 0.24 ABZR87_RS21100 TRAP transporter large permease low > 80
Rhizobium sp. OAE497 0.45 ABIE40_RS16090 gamma-glutamyltransferase 0.31 ABIE40_RS25810 TRAP transporter large permease low > 107
Rhodopseudomonas palustris CGA009 0.45 TX73_000130 gamma-glutamyltransferase 0.29 TX73_010560 TRAP transporter large permease subunit low > 86
Rahnella sp. WP5 0.44 EX31_RS22075 gamma-glutamyltransferase 0.33 EX31_RS08020 TRAP transporter large permease low > 89
Pectobacterium carotovorum WPP14 0.43 HER17_RS00330 gamma-glutamyltransferase 0.32 HER17_RS19685 TRAP transporter large permease low > 75
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_3948 gamma-glutamyltranspeptidase 0.27 Echvi_3627 TRAP transporter, DctM subunit low > 79
Caulobacter crescentus NA1000 0.38 CCNA_01035 gamma-glutamyltranspeptidase 0.31 CCNA_01515 C4-dicarboxylate transporter large subunit low > 66
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_01035 gamma-glutamyltranspeptidase 0.31 CCNA_01515 C4-dicarboxylate transporter large subunit low > 67
Alteromonas macleodii MIT1002 0.37 MIT1002_00538 Gamma-glutamyltranspeptidase precursor 0.32 MIT1002_02428 Neu5Ac permease low > 70
Paraburkholderia graminis OAS925 0.36 ABIE53_004289 gamma-glutamyltranspeptidase/glutathione hydrolase 0.24 ABIE53_006500 tripartite ATP-independent transporter DctM subunit low > 113
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS21360 gamma-glutamyltranspeptidase 0.24 BPHYT_RS24185 C4-dicarboxylate ABC transporter permease low > 109
Pseudomonas putida KT2440 0.35 PP_4659 gamma-glutamyltranspeptidase 0.30 PP_1167 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) low > 96
Pseudomonas stutzeri RCH2 0.35 Psest_1413 gamma-glutamyltranspeptidase 0.52 Psest_2124 D-gluconate TRAP transporter, large permease component (from data) low > 67
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.2158.1 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.29 Xcc-8004.203.1 TRAP-type C4-dicarboxylate transport system, large permease component low > 74
Lysobacter sp. OAE881 0.31 ABIE51_RS15105 gamma-glutamyltransferase 0.27 ABIE51_RS02840 TRAP transporter large permease low > 62
Bosea sp. OAE506 0.30 ABIE41_RS10575 gamma-glutamyltransferase 0.53 ABIE41_RS24150 TRAP transporter large permease subunit low > 77
Agrobacterium fabrum C58 0.26 Atu5507 gamma-glutamyltranspeptidase 0.54 Atu2743 hypothetical protein low > 89
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_01035 gamma-glutamyltransferase 0.32 CSW01_08915 ABC transporter permease low > 62
Azospirillum brasilense Sp245 0.24 AZOBR_RS03085 gamma-glutamyltransferase 0.55 AZOBR_RS26625 dehydroascorbate transporter low > 97
Dinoroseobacter shibae DFL-12 0.23 Dshi_0675 gamma-glutamyltransferase (RefSeq) 0.29 Dshi_2753 TRAP dicarboxylate transporter, DctM subunit (RefSeq) low > 64
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS26175 gamma-glutamyltransferase 0.30 RR42_RS34990 ABC transporter permease low > 128
Phaeobacter inhibens DSM 17395 0.22 PGA1_c28250 gamma-glutamyltranspeptidase Ggt 0.27 PGA1_c20660 TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF3824 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.54 GFF5230 TRAP-type C4-dicarboxylate transport system, large permease component low > 90
Dechlorosoma suillum PS 0.17 Dsui_0417 gamma-glutamyltransferase 0.31 Dsui_3153 TRAP transporter, DctM subunit low > 51
Magnetospirillum magneticum AMB-1 0.14 AMB_RS21795 gamma-glutamyltransferase family protein 0.29 AMB_RS04550 C4-dicarboxylate ABC transporter permease low > 64

Not shown: 32 genomes with orthologs for b3447 only; 1 genomes with orthologs for b3578 only