Conservation of cofitness between b4015 and b3279 in Escherichia coli BW25113

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4015 aceA isocitrate lyase (NCBI) 1.0 b3279 yrdA putative transferase (VIMSS) 0.20 17
Escherichia coli BL21 1.00 ECD_03887 isocitrate lyase 0.99 ECD_03130 bacterial transferase hexapeptide domain protein low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04035 Isocitrate lyase 1.00 OHPLBJKB_00424 Protein YrdA low > 73
Escherichia coli Nissle 1917 1.00 ECOLIN_RS26870 isocitrate lyase 0.99 ECOLIN_RS18830 gamma carbonic anhydrase family protein
Escherichia coli ECRC62 1.00 BNILDI_06110 aceA isocitrate lyase 1.00 BNILDI_02155 yrdA Protein YrdA
Escherichia coli ECOR38 1.00 HEPCGN_11905 aceA isocitrate lyase 1.00 HEPCGN_16395 yrdA Protein YrdA low > 85
Escherichia coli ECOR27 1.00 NOLOHH_05410 aceA isocitrate lyase 1.00 NOLOHH_09365 yrdA Protein YrdA low > 57
Escherichia fergusonii Becca 1.00 EFB2_04595 Isocitrate lyase 0.99 EFB2_00544 Protein YrdA low > 86
Escherichia coli ECRC102 1.00 NIAGMN_11015 aceA isocitrate lyase 1.00 NIAGMN_15335 yrdA Protein YrdA
Escherichia coli ECRC101 1.00 OKFHMN_13265 aceA isocitrate lyase 1.00 OKFHMN_17575 yrdA Protein YrdA
Escherichia coli ECRC99 1.00 KEDOAH_14895 aceA isocitrate lyase 1.00 KEDOAH_10575 yrdA Protein YrdA
Escherichia coli ECRC98 1.00 JDDGAC_16890 aceA isocitrate lyase 1.00 JDDGAC_21195 yrdA Protein YrdA
Escherichia coli ECRC101 1.00 MCAODC_03765 aceA isocitrate lyase 1.00 MCAODC_08095 yrdA Protein YrdA
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF1352 Isocitrate lyase (EC 4.1.3.1) 0.88 GFF2399 carbonic anhydrase, family 3 low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) (from data) 0.83 BWI76_RS25635 gamma carbonic anhydrase family protein low > 92
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4329 isocitrate lyase 0.88 EX28DRAFT_0048 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_00232 Isocitrate lyase 0.86 MPMX20_04187 Protein YrdA low > 85
Pectobacterium carotovorum WPP14 0.89 HER17_RS02295 isocitrate lyase 0.74 HER17_RS02260 gamma carbonic anhydrase family protein low > 75
Dickeya dianthicola 67-19 0.89 HGI48_RS19145 isocitrate lyase 0.75 HGI48_RS19180 gamma carbonic anhydrase family protein low > 71
Dickeya dadantii 3937 0.88 DDA3937_RS19055 isocitrate lyase 0.75 DDA3937_RS19090 gamma carbonic anhydrase family protein low > 74
Dickeya dianthicola ME23 0.88 DZA65_RS20265 isocitrate lyase 0.75 DZA65_RS20305 gamma carbonic anhydrase family protein low > 75
Rahnella sp. WP5 0.87 EX31_RS11745 isocitrate lyase 0.75 EX31_RS15945 gamma carbonic anhydrase family protein low > 89
Serratia liquefaciens MT49 0.87 IAI46_23190 isocitrate lyase 0.73 IAI46_23235 gamma carbonic anhydrase family protein low > 86
Pantoea sp. MT58 0.84 IAI47_18005 isocitrate lyase 0.75 IAI47_02325 gamma carbonic anhydrase family protein 0.31 50
Shewanella loihica PV-4 0.83 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) 0.60 Shew_3725 carbonic anhydrase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.83 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) 0.61 Sama_0054 carbonic anhydrase (RefSeq) 0.37 56
Shewanella oneidensis MR-1 0.82 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) 0.62 SO0042 carbonic anhydrase, family 3 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.82 Shewana3_2942 isocitrate lyase (RefSeq) 0.61 Shewana3_0045 carbonic anhydrase (RefSeq) 0.33 51
Vibrio cholerae E7946 ATCC 55056 0.80 CSW01_03830 isocitrate lyase 0.66 CSW01_00290 gamma carbonic anhydrase family protein low > 62
Dechlorosoma suillum PS 0.75 Dsui_0011 isocitrate lyase 0.51 Dsui_2380 isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase low > 51
Variovorax sp. OAS795 0.75 ABID97_RS11115 isocitrate lyase 0.37 ABID97_RS20225 gamma carbonic anhydrase family protein
Pseudomonas fluorescens SBW25 0.74 PFLU_RS18610 isocitrate lyase 0.65 PFLU_RS00235 gamma carbonic anhydrase family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS18610 isocitrate lyase 0.65 PFLU_RS00235 gamma carbonic anhydrase family protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_27735 isocitrate lyase 0.65 AO353_10770 anhydrase low > 101
Pseudomonas simiae WCS417 0.74 PS417_16570 isocitrate lyase 0.65 PS417_00240 anhydrase low > 88
Variovorax sp. SCN45 0.74 GFF4829 Isocitrate lyase (EC 4.1.3.1) 0.36 GFF2764 Carbonic anhydrase-like protein MJ0304 low > 127
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) 0.64 PfGW456L13_625 carbonic anhydrase, family 3 low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.74 GFF4147 Isocitrate lyase (EC 4.1.3.1) 0.36 GFF5446 carbonic anhydrase, family 3
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_3196 isocitrate lyase 0.63 Psyr_0044 transferase hexapeptide repeat protein
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_3196 isocitrate lyase 0.63 Psyr_0044 transferase hexapeptide repeat protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) 0.66 Pf1N1B4_1843 carbonic anhydrase, family 3 low > 87
Pseudomonas sp. RS175 0.74 PFR28_02625 Isocitrate lyase 0.65 PFR28_04700 Protein YrdA low > 88
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_22080 isocitrate lyase 0.65 AO356_11115 anhydrase low > 104
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) 0.65 Pf6N2E2_4090 carbonic anhydrase, family 3 low > 103
Acidovorax sp. GW101-3H11 0.73 Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) (from data) 0.49 Ac3H11_4230 carbonic anhydrase, family 3 low > 79
Pseudomonas putida KT2440 0.73 PP_4116 isocitrate lyase 0.65 PP_0095 putative enzyme of unknown function low > 96
Castellaniella sp019104865 MT123 0.71 ABCV34_RS06915 isocitrate lyase 0.37 ABCV34_RS13300 gamma carbonic anhydrase family protein low > 48
Lysobacter sp. OAE881 0.69 ABIE51_RS00190 isocitrate lyase 0.49 ABIE51_RS01770 gamma carbonic anhydrase family protein low > 62
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS06270 isocitrate lyase 0.33 QEN71_RS05900 gamma carbonic anhydrase family protein low > 153
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS10565 isocitrate lyase 0.34 HSERO_RS08610 anhydrase low > 78
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS12200 isocitrate lyase 0.60 RR42_RS06425 anhydrase low > 128
Rhodanobacter denitrificans MT42 0.68 LRK55_RS10225 isocitrate lyase 0.48 LRK55_RS08375 gamma carbonic anhydrase family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS10585 isocitrate lyase 0.48 LRK54_RS08610 gamma carbonic anhydrase family protein low > 59
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.311.1 Isocitrate lyase (EC 4.1.3.1) 0.49 Xcc-8004.456.1 carbonic anhydrase, family 3 low > 74
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS12285 isocitrate lyase 0.33 BPHYT_RS31840 anhydrase low > 109
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_13320 aceA isocitrate lyase 0.48 OKGIIK_15375 Carnitine operon protein CaiE low > 52
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS13490 isocitrate lyase 0.49 ABZR86_RS14950 gamma carbonic anhydrase family protein low > 74
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS11590 isocitrate lyase 0.33 ABZR87_RS10490 gamma carbonic anhydrase family protein low > 80
Pontibacter actiniarum KMM 6156, DSM 19842 0.63 CA264_09255 isocitrate lyase 0.40 CA264_14360 gamma carbonic anhydrase family protein low > 74
Azospirillum sp. SherDot2 0.59 MPMX19_05830 Isocitrate lyase 0.37 MPMX19_03844 Protein YrdA 0.54 18
Sinorhizobium meliloti 1021 0.57 SMc00768 isocitrate lyase 0.35 SMc04241 acetyltransferase low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS02595 isocitrate lyase 0.29 A4249_RS02210 gamma carbonic anhydrase family protein low > 48
Azospirillum brasilense Sp245 0.56 AZOBR_RS02405 isocitrate lyase 0.36 AZOBR_RS07800 carbonic anhydrase low > 97
Caulobacter crescentus NA1000 0.17 CCNA_01841 isocitrate lyase 0.32 CCNA_02726 gamma carbonic anhydrase family protein low > 66
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_01841 isocitrate lyase 0.32 CCNA_02726 gamma carbonic anhydrase family protein low > 67
Acinetobacter radioresistens SK82 0.16 MPMX26_02319 Isocitrate lyase 0.60 MPMX26_01050 Protein YrdA low > 36
Alteromonas macleodii MIT1002 0.16 MIT1002_02831 Isocitrate lyase 0.63 MIT1002_00030 carnitine operon protein CaiE low > 70
Rhodopseudomonas palustris CGA009 0.15 TX73_022775 isocitrate lyase 0.32 TX73_017715 gamma carbonic anhydrase family protein
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_1963 Isocitrate lyase 0.37 Ga0059261_0268 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily low > 68

Not shown: 9 genomes with orthologs for b4015 only; 17 genomes with orthologs for b3279 only