Homologs of GFF4047 from Sphingobium sp. HT1-2

RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF4047 RNA polymerase ECF-type sigma factor cofit 100 100
  Sphingobium sp. HT1-2 GFF1845 hypothetical protein cofit 49 100
  Caulobacter crescentus NA1000 CCNA_01032 RNA polymerase ECF-type sigma factor cofit 41 74
  Caulobacter crescentus NA1000 Δfur CCNA_01032 RNA polymerase ECF-type sigma factor cofit 41 74
  Sphingobium sp. HT1-2 GFF5314 hypothetical protein cofit 38 88
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0584 RNA polymerase sigma factor, sigma-70 family insig. 35 77
  Variovorax sp. SCN45 GFF2401 hypothetical protein insig. 36 74
  Sphingobium sp. HT1-2 GFF5276 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 32 77
  Sphingobium sp. HT1-2 GFF4091 hypothetical protein insig. 31 73
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0766 RNA polymerase sigma factor, sigma-70 family insig. 29 78
  Alteromonas macleodii MIT1002 MIT1002_03920 putative RNA polymerase sigma factor FecI cofit 31 66
  Alteromonas macleodii MIT1002 MIT1002_01237 Sigma-24 cofit 29 72
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 34 73
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 34 64
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 39 52
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 32 68
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 36 68
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 32 64
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 34 68
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 34 64
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 27 74
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 27 74
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 27 74
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 35 71
  Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 30 79
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 29 68
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS19630 RNA polymerase sigma factor sig. 27 78
  Ralstonia solanacearum UW163 UW163_RS19545 RNA polymerase sigma factor insig. 27 78
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 31 63
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 31 63
  Pseudomonas sp. BP01 JOY50_RS11380 RNA polymerase sigma factor insig. 30 79
  Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 30 79
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 35 64
  Pseudomonas fluorescens FW300-N2E3 AO353_03435 RNA polymerase subunit sigma-24 insig. 29 76
  Herbaspirillum seropedicae SmR1 HSERO_RS12165 RNA polymerase sigma factor insig. 33 74
  Klebsiella pneumoniae MKP103 KDGMDA_00205 RNA polymerase sigma factor FecI insig. 28 74
  Pseudomonas aeruginosa PA14 IKLFDK_24795 RNA polymerase sigma factor insig. 38 49
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02700 RNA polymerase sigma-70 factor insig. 29 63
  Pseudomonas sp. SVBP6 COO64_RS04525 RNA polymerase sigma factor insig. 28 76
  Pseudomonas aeruginosa MRSN321 DY961_RS27025 RNA polymerase sigma factor insig. 38 49
  Pseudomonas aeruginosa PUPa3 DQ20_RS31565 RNA polymerase sigma factor sig. 38 49
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0778 RNA polymerase sigma factor, sigma-70 family insig. 32 69
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1886 FIG006045: Sigma factor, ECF subfamily insig. 28 76
  Methylophilus sp. DMC18 GFF1078 hypothetical protein insig. 27 76
  Pseudomonas aeruginosa MRSN321 DY961_RS18835 RNA polymerase sigma factor sig. 31 66
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma no data 31 66
  Pseudomonas aeruginosa PUPa3 DQ20_RS52975 RNA polymerase sigma factor insig. 31 66
  Ralstonia solanacearum PSI07 RPSI07_RS03580 RNA polymerase sigma factor insig. 27 78
  Pseudomonas orientalis W4I3 QF045_RS19140 sigma-70 family RNA polymerase sigma factor insig. 34 64
  Sphingobium sp. HT1-2 GFF5162 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 30 71
  Ralstonia solanacearum PSI07 RPSI07_RS01670 RNA polymerase sigma factor insig. 29 60
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2900 FIG006045: Sigma factor, ECF subfamily insig. 27 79
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 26 75
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 33 64
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 31 64
  Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 29 78
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 34 59
  Caulobacter crescentus NA1000 CCNA_01187 RNA polymerase ECF-type sigma factor insig. 32 61
  Caulobacter crescentus NA1000 Δfur CCNA_01187 RNA polymerase ECF-type sigma factor cofit 32 61
  Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 30 76
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 30 76
  Pseudomonas sp. SVBP6 COO64_RS04025 sigma-70 family RNA polymerase sigma factor insig. 33 72
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 32 64
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3549 RNA polymerase sigma factor, sigma-70 family insig. 32 71
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 30 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 30 79
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 39 48
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 39 48
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09435 RNA polymerase sigma factor insig. 31 76
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 32 74
  Bacteroides ovatus ATCC 8483 BACOVA_05617 RNA polymerase sigma-70 factor sig. 30 73
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 29 68
  Pseudomonas sp. SVBP6 COO64_RS16380 RNA polymerase sigma factor insig. 34 68
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 31 68
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 30 76
  Pseudomonas sp. SVBP6 COO64_RS14455 sigma-70 family RNA polymerase sigma factor insig. 30 73
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 30 84
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_604 FIG006045: Sigma factor, ECF subfamily insig. 28 76
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 26 80
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05575 RNA polymerase sigma-70 factor insig. 26 74
  Ralstonia solanacearum GMI1000 RS_RS21190 RNA polymerase sigma factor cofit 26 78
  Bacteroides stercoris CC31F HMPREF1181_RS02545 sigma-70 family RNA polymerase sigma factor insig. 30 73
  Pseudomonas sp. DMC3 GFF5154 hypothetical protein insig. 27 79
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01230 putative RNA polymerase sigma factor FecI insig. 31 74
  Bacteroides thetaiotaomicron VPI-5482 BT0139 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 33 60
  Pseudomonas fluorescens FW300-N2C3 AO356_07625 RNA polymerase subunit sigma insig. 31 63
  Pseudomonas sp. BP01 JOY50_RS26950 sigma-70 family RNA polymerase sigma factor insig. 31 68
  Pseudomonas sp. BP01 JOY50_RS04635 sigma-70 family RNA polymerase sigma factor insig. 39 49
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09360 RNA polymerase sigma factor insig. 32 78
  Pseudomonas sp. BP01 JOY50_RS15495 RNA polymerase sigma factor insig. 32 80
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05735 RNA polymerase sigma-70 factor insig. 24 69
  Pseudomonas orientalis W4I3 QF045_RS08105 RNA polymerase sigma factor insig. 37 48
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 31 64
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 29 68
  Ralstonia solanacearum GMI1000 RS_RS19160 RNA polymerase sigma factor sig. 29 60
  Phocaeicola dorei CL03T12C01 ABI39_RS04680 RNA polymerase sigma factor insig. 27 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 37 48
  Sphingobium sp. HT1-2 GFF3691 RNA polymerase ECF-type sigma factor cofit 35 62
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 32 61
  Pseudomonas sp. BP01 JOY50_RS12990 sigma-70 family RNA polymerase sigma factor insig. 30 68