Homologs of PS417_20565 from Pseudomonas simiae WCS417

RNA polymerase subunit sigma-24
SEED: RNA polymerase sigma factor RpoE
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_20565 RNA polymerase subunit sigma-24 insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS22255 RNA polymerase sigma factor cofit 99 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22255 RNA polymerase sigma factor insig. 99 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04263 ECF RNA polymerase sigma-E factor cofit 98 100
o Pseudomonas orientalis W4I3 QF045_RS22475 RNA polymerase sigma factor insig. 96 100
o Pseudomonas sp. RS175 PFR28_00741 ECF RNA polymerase sigma-E factor insig. 85 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2692 RNA polymerase sigma factor RpoE sig. 85 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3390 RNA polymerase sigma factor RpoE insig. 90 100
o Pseudomonas fluorescens FW300-N2C3 AO356_04270 RNA polymerase subunit sigma-24 insig. 83 100
o Pseudomonas fluorescens FW300-N2E3 AO353_18235 RNA polymerase subunit sigma-24 insig. 89 98
o Pseudomonas sp. DMC3 GFF2343 ECF RNA polymerase sigma-E factor insig. 88 99
o Pseudomonas sp. SVBP6 COO64_RS21990 RNA polymerase sigma factor insig. 80 100
o Pseudomonas segetis P6 ACVTMO_RS16165 RNA polymerase sigma factor sig. 75 100
o Pseudomonas sp. S08-1 OH686_05515 RNA polymerase sigma factor RpoE cofit 76 99
o Pseudomonas aeruginosa PA14 IKLFDK_16830 RNA polymerase subunit sigma-24 insig. 73 100
o Pseudomonas aeruginosa MRSN321 DY961_RS00460 RNA polymerase sigma factor insig. 72 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS40570 RNA polymerase sigma factor insig. 72 100
o Kangiella aquimarina DSM 16071 B158DRAFT_0596 RNA polymerase sigma factor, sigma-70 family insig. 43 98
o Marinobacter adhaerens HP15 HP15_3848 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 40 96
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 32 90
  Marinobacter adhaerens HP15 HP15_1654 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 28 90
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 30 92
  Dickeya dianthicola 67-19 HGI48_RS15850 RNA polymerase sigma factor RpoE cofit 32 90
  Dickeya dianthicola ME23 DZA65_RS16930 RNA polymerase sigma factor RpoE strong 32 90
  Serratia liquefaciens MT49 IAI46_19585 RNA polymerase sigma factor RpoE no data 32 90
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 30 90
  Pectobacterium carotovorum WPP14 HER17_RS05780 RNA polymerase sigma factor RpoE no data 32 90
  Dickeya dadantii 3937 DDA3937_RS15765 RNA polymerase sigma factor RpoE strong 32 90
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 31 90
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 30 90
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 30 90
  Bacteroides thetaiotaomicron VPI-5482 BT1817 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 27 94
  Enterobacter asburiae PDN3 EX28DRAFT_0072 RNA polymerase sigma factor RpoE no data 32 90
  Enterobacter sp. TBS_079 MPMX20_03444 ECF RNA polymerase sigma-E factor no data 32 90
  Rahnella sp. WP5 EX31_RS21800 RNA polymerase sigma factor RpoE no data 30 90
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 28 97
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 28 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 28 97
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 28 99
  Escherichia coli BL21 ECD_02467 RNA polymerase sigma E factor no data 31 90
  Escherichia fergusonii Becca EFB2_01323 ECF RNA polymerase sigma-E factor no data 31 90
  Escherichia coli ECOR27 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli ECOR38 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli ECRC100 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli ECRC101 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli ECRC102 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli ECRC62 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli ECRC98 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli ECRC99 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01134 ECF RNA polymerase sigma-E factor no data 31 90
  Escherichia coli Nissle 1917 ECOLIN_RS14560 RNA polymerase sigma factor RpoE no data 31 90
  Escherichia coli BW25113 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) no data 31 90
  Methylophilus sp. DMC18 GFF1725 ECF RNA polymerase sigma factor SigM insig. 31 75
  Pantoea sp. MT58 IAI47_04850 RNA polymerase sigma factor RpoE no data 31 90
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 30 90
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 30 90
  Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 30 90
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01572 RNA polymerase sigma-H factor cofit 30 90
  Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 30 90
  Pseudomonas sp. SVBP6 COO64_RS16525 rpoE RNA polymerase sigma factor RpoE insig. 30 90
  Pseudomonas orientalis W4I3 QF045_RS09835 RNA polymerase sigma factor RpoE cofit 30 90
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 30 90
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 30 90
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 30 90
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 30 90
  Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 30 90
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 30 90
  Erwinia tracheiphila SCR3 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE strong 29 90
  Marinobacter adhaerens HP15 HP15_3537 protein containing RNA polymerase sigma-70 domain sig. 28 91
  Pseudomonas sp. BP01 JOY50_RS14665 rpoE RNA polymerase sigma factor RpoE insig. 30 90
  Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 30 90
  Rhodanobacter sp. FW510-T8 OKGIIK_14380 RNA polymerase sigma factor insig. 27 88
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS14740 RNA polymerase sigma factor RpoE no data 31 90
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2107 RNA polymerase sigma factor RpoE no data 31 90
  Erwinia amylovora T8 OLJFJH_10215 RNA polymerase sigma factor RpoE strong 30 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 28 97
  Pseudomonas segetis P6 ACVTMO_RS06940 rpoE RNA polymerase sigma factor RpoE strong 30 92
  Shewanella amazonensis SB2B Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) strong 31 90
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 29 90
  Pseudomonas aeruginosa MRSN321 DY961_RS08690 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 30 90
  Pseudomonas aeruginosa PA14 IKLFDK_03265 alginate biosynthesis protein AlgZ/FimS strong 30 90
  Pseudomonas aeruginosa PUPa3 DQ20_RS44160 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 30 90
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 30 90
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 30 90
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01235 rpoE RNA polymerase sigma factor RpoE strong 30 90
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 27 95
  Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 31 90
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 30 88
  Klebsiella pneumoniae MKP103 KDGMDA_28480 RNA polymerase sigma factor RpoE no data 30 90
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 29 90
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 28 93
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 29 90
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 28 90
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 28 90
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 28 90
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 28 90
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 28 90
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 25 95
  Pseudomonas segetis P6 ACVTMO_RS12985 sigX RNA polymerase sigma factor SigX no data 31 83
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 29 90