Homologs of GFF3935 from Variovorax sp. SCN45

RNA polymerase ECF-type sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF3935 RNA polymerase ECF-type sigma factor insig. 100 100
o Variovorax sp. OAS795 ABID97_RS08675 RNA polymerase sigma factor insig. 89 99
o Cupriavidus basilensis FW507-4G11 RR42_RS26775 RNA polymerase subunit sigma-24 insig. 74 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19755 RNA polymerase sigma factor insig. 74 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS16225 RNA polymerase sigma factor insig. 73 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03679 RNA polymerase, sigma subunit, ECF family insig. 74 98
o Burkholderia phytofirmans PsJN BPHYT_RS35225 RNA polymerase subunit sigma-24 insig. 74 97
o Lysobacter sp. OAE881 ABIE51_RS14880 RNA polymerase sigma factor insig. 72 95
o Rhodanobacter denitrificans MT42 LRK55_RS01915 RNA polymerase sigma factor cofit 71 97
o Paraburkholderia graminis OAS925 ABIE53_004579 RNA polymerase sigma factor (sigma-70 family) insig. 74 97
o Ralstonia solanacearum GMI1000 RS_RS20165 RNA polymerase subunit sigma-24 insig. 69 97
o Rhodanobacter sp. FW510-T8 OKGIIK_09210 RNA polymerase subunit sigma-24 insig. 72 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02165 RNA polymerase sigma factor insig. 71 97
o Ralstonia sp. UNC404CL21Col ABZR87_RS21130 RNA polymerase sigma factor insig. 70 97
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF454 RNA polymerase sigma-70 factor, ECF subfamily insig. 68 97
o Acidovorax sp. GW101-3H11 Ac3H11_5010 RNA polymerase sigma-70 factor, ECF subfamily insig. 67 97
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3970 Predicted RNA polymerase sigma factor containing a TPR repeat domain insig. 64 97
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07860 RNA polymerase sigma factor insig. 70 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4799.1 RNA polymerase sigma-70 factor, ECF subfamily insig. 62 97
o Pseudomonas fluorescens FW300-N2E3 AO353_03200 RNA polymerase subunit sigma-24 insig. 47 96
o Pseudomonas sp. S08-1 OH686_16765 RNA polymerase ECF-type sigma factor cofit 48 94
o Pseudomonas stutzeri RCH2 Psest_4133 RNA polymerase sigma factor, sigma-70 family sig. 50 94
o Pseudomonas orientalis W4I3 QF045_RS24050 RNA polymerase sigma factor insig. 47 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3399 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 97
o Pseudomonas fluorescens SBW25 PFLU_RS23540 RNA polymerase sigma factor insig. 49 95
o Pseudomonas fluorescens SBW25-INTG PFLU_RS23540 RNA polymerase sigma factor insig. 49 95
o Pseudomonas simiae WCS417 PS417_21945 RNA polymerase subunit sigma-24 insig. 50 95
o Pseudomonas aeruginosa PUPa3 DQ20_RS53230 RNA polymerase sigma factor insig. 49 88
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04525 hypothetical protein cofit 48 95
o Pseudomonas sp. DMC3 GFF5258 hypothetical protein cofit 47 97
o Pseudomonas aeruginosa MRSN321 DY961_RS19105 RNA polymerase sigma factor insig. 48 88
o Pseudomonas aeruginosa PA14 IKLFDK_06430 RNA polymerase subunit sigma-24 insig. 48 89
o Rhizobium sp. OAE497 ABIE40_RS05880 RNA polymerase sigma factor insig. 44 96
o Pseudomonas sp. BP01 JOY50_RS01330 RNA polymerase sigma factor insig. 47 95
o Pseudomonas sp. RS175 PFR28_00603 hypothetical protein insig. 47 97
o Pseudomonas fluorescens FW300-N2C3 AO356_05020 RNA polymerase subunit sigma-24 insig. 46 97
o Pseudomonas putida KT2440 PP_4553 RNA polymerase sigma-70 factor, ECF subfamily insig. 46 95
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2854 RNA polymerase sigma-70 factor, ECF subfamily insig. 46 97
o Pseudomonas segetis P6 ACVTMO_RS18060 RNA polymerase sigma factor insig. 48 90
o Pseudomonas sp. SVBP6 COO64_RS22035 RNA polymerase sigma factor insig. 46 97
  Rhizobium sp. OAE497 ABIE40_RS13680 RNA polymerase sigma factor insig. 44 89
  Rhizobium sp. OAE497 ABIE40_RS18175 RNA polymerase sigma factor cofit 41 96
o Xanthobacter sp. DMC5 GFF549 hypothetical protein insig. 46 91
o Sinorhizobium meliloti 1021 SMc01150 hypothetical protein insig. 44 92
  Caulobacter crescentus NA1000 CCNA_01390 RNA polymerase sigma factor insig. 44 87
  Caulobacter crescentus NA1000 Δfur CCNA_01390 RNA polymerase sigma factor insig. 44 87
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1935 RNA polymerase sigma-70 factor, ECF subfamily insig. 49 63
o Rhodopseudomonas palustris CGA009 TX73_005700 RNA polymerase sigma factor insig. 42 91
  Burkholderia phytofirmans PsJN BPHYT_RS31175 RNA polymerase sigma70 factor insig. 38 95
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4295 Predicted RNA polymerase sigma factor containing a TPR repeat domain insig. 32 96
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12320 RNA polymerase sigma factor insig. 34 85
  Paraburkholderia sabiae LMG 24235 QEN71_RS33360 sigma factor insig. 38 93
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS15535 DNA-directed RNA polymerase sigma-70 factor insig. 40 93
  Variovorax sp. SCN45 GFF4791 RNA polymerase ECF-type sigma factor insig. 35 94
  Rhodanobacter denitrificans MT42 LRK55_RS15255 sigma factor insig. 42 78
  Variovorax sp. OAS795 ABID97_RS20345 DUF6596 domain-containing protein insig. 36 82
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4599 RNA polymerase sigma-70 factor, ECF subfamily insig. 34 95
  Bosea sp. OAE506 ABIE41_RS09620 DUF6596 domain-containing protein insig. 35 98
  Caulobacter crescentus NA1000 CCNA_00393 RNA polymerase sigma factor insig. 37 83
  Caulobacter crescentus NA1000 Δfur CCNA_00393 RNA polymerase sigma factor cofit 37 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1936 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 33
  Mycobacterium tuberculosis H37Rv Rv1189 Possible alternative RNA polymerase sigma factor SigI no data 30 43
  Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 31 39
  Variovorax sp. SCN45 GFF5440 RNA polymerase ECF-type sigma factor insig. 34 38
  Mycobacterium tuberculosis H37Rv Rv0445c Alternative RNA polymerase sigma factor SigK insig. 32 36
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 30 38
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 31 38
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 31 38
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 31 38
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 31 38
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 32 36
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 31 38
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08045 sigma-70 family RNA polymerase sigma factor cofit 28 39
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 27 43
  Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 25 38
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 32 36
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 32 36
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 32 36
  Variovorax sp. OAS795 ABID97_RS02030 RNA polymerase sigma-70 factor insig. 31 37
  Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 26 40
  Burkholderia phytofirmans PsJN BPHYT_RS21845 hypothetical protein insig. 29 38
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 28 38
  Paraburkholderia sabiae LMG 24235 QEN71_RS31540 RNA polymerase sigma-70 factor insig. 31 37
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 29 42
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE no data 29 42
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 27 35
  Burkholderia phytofirmans PsJN BPHYT_RS11635 RNA polymerase subunit sigma-24 insig. 33 38
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 26 38
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 29 36
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 29 42
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 29 42
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 25 41
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 27 38
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 26 37
  Kangiella aquimarina DSM 16071 B158DRAFT_0930 RNA polymerase sigma factor, sigma-70 family insig. 22 38
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01268 RNA polymerase sigma-70 factor, ECF subfamily insig. 33 40
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 28 35
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 28 43
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 26 38
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01445 sigma-70 family RNA polymerase sigma factor insig. 30 42