Homologs of GFF3346 from Sphingobium sp. HT1-2

RidA/YER057c/UK114 superfamily, group 1
SEED: Endoribonuclease L-PSP

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3346 RidA/YER057c/UK114 superfamily, group 1 cofit 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2685 Putative translation initiation inhibitor, yjgF family strong 71 97
o Rhodospirillum rubrum S1H Rru_A2457 Endoribonuclease L-PSP (NCBI) no data 59 97
o Phaeobacter inhibens DSM 17395 PGA1_c29320 putative endoribonuclease L-PSP sig. 57 97
o Dinoroseobacter shibae DFL-12 Dshi_0137 Endoribonuclease L-PSP (RefSeq) strong 55 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08380 RidA family protein strong 59 98
o Magnetospirillum magneticum AMB-1 AMB_RS13835 RidA family protein insig. 57 96
o Rhizobium sp. OAE497 ABIE40_RS08890 RidA family protein insig. 55 96
o Caulobacter crescentus NA1000 CCNA_02241 endoribonuclease L-PSP strong 54 97
o Caulobacter crescentus NA1000 Δfur CCNA_02241 endoribonuclease L-PSP insig. 54 97
o Azospirillum sp. SherDot2 MPMX19_00535 hypothetical protein insig. 60 96
o Agrobacterium fabrum C58 Atu1372 hypothetical protein strong 51 96
o Azospirillum brasilense Sp245 AZOBR_RS05145 endoribonuclease sig. 57 96
o Sinorhizobium meliloti 1021 SMc02103 hypothetical protein insig. 52 96
o Ralstonia solanacearum GMI1000 RS_RS04880 RidA family protein no data 53 96
o Bosea sp. OAE506 ABIE41_RS18195 RidA family protein insig. 53 97
o Xanthobacter sp. DMC5 GFF387 hypothetical protein sig. 51 97
o Mycobacterium tuberculosis H37Rv Rv3678c Conserved protein no data 53 97
o Cupriavidus basilensis FW507-4G11 RR42_RS26810 endoribonuclease insig. 54 99
o Rhodopseudomonas palustris CGA009 TX73_016220 RidA family protein sig. 53 96
o Herbaspirillum seropedicae SmR1 HSERO_RS09045 translation initiation inhibitor protein no data 51 97
o Ralstonia solanacearum PSI07 RPSI07_RS19360 RidA family protein no data 54 96
o Burkholderia phytofirmans PsJN BPHYT_RS05960 endoribonuclease L-PSP strong 51 95
o Acidovorax sp. GW101-3H11 Ac3H11_268 Bona fide RidA/YjgF/TdcF/RutC subgroup sig. 48 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS24665 RidA family protein insig. 50 95
o Cellulophaga baltica 18 M666_RS04690 RidA family protein insig. 52 95
o Paraburkholderia graminis OAS925 ABIE53_001398 enamine deaminase RidA (YjgF/YER057c/UK114 family) strong 51 95
  Cupriavidus basilensis FW507-4G11 RR42_RS14585 L-PSP family endoribonuclease sig. 53 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00270 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family strong 50 95
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS14100 RidA family protein no data 54 96
o Ralstonia solanacearum UW163 UW163_RS15710 RidA family protein insig. 54 96
o Ralstonia sp. UNC404CL21Col ABZR87_RS09820 RidA family protein insig. 54 95
  Burkholderia phytofirmans PsJN BPHYT_RS10460 endoribonuclease no data 46 94
o Pseudomonas sp. SVBP6 COO64_RS23680 RidA family protein insig. 48 97
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5556 Bona fide RidA/YjgF/TdcF/RutC subgroup no data 47 98
o Pseudomonas simiae WCS417 PS417_06660 endoribonuclease insig. 50 98
  Burkholderia phytofirmans PsJN BPHYT_RS13395 endoribonuclease L-PSP insig. 43 98
o Variovorax sp. SCN45 GFF2690 RidA/YER057c/UK114 superfamily, group 1 no data 49 97
  Bosea sp. OAE506 ABIE41_RS21995 RidA family protein insig. 44 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_10595 NAD(P)H:quinone oxidoreductase, type IV insig. 41 96
o Variovorax sp. OAS795 ABID97_RS20010 RidA family protein no data 49 97
o Pseudomonas fluorescens SBW25 PFLU_RS06690 RidA family protein insig. 47 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06690 RidA family protein insig. 47 98
o Pseudomonas sp. BP01 JOY50_RS05210 RidA family protein no data 44 97
  Agrobacterium fabrum C58 Atu3265 hypothetical protein insig. 45 95
o Pseudomonas aeruginosa PA14 IKLFDK_03535 RidA family protein insig. 46 85
  Pseudomonas sp. BP01 JOY50_RS05535 RidA family protein no data 43 94
  Variovorax sp. SCN45 GFF116 RidA/YER057c/UK114 superfamily, group 1 insig. 49 95
  Pseudomonas fluorescens FW300-N2E3 AO353_14625 hypothetical protein insig. 41 84
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01472 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family insig. 37 98
  Variovorax sp. SCN45 GFF4151 RidA/YER057c/UK114 superfamily, group 1 insig. 41 92
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3623 Endoribonuclease L-PSP insig. 42 98
  Rhizobium sp. OAE497 ABIE40_RS26075 RidA family protein insig. 48 95
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2090 Putative translation initiation inhibitor, yjgF family insig. 38 98
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1690 Putative translation initiation inhibitor, yjgF family no data 37 98
  Acidovorax sp. GW101-3H11 Ac3H11_3793 Bona fide RidA/YjgF/TdcF/RutC subgroup insig. 38 99
  Variovorax sp. SCN45 GFF195 RidA/YER057c/UK114 superfamily, group 1 insig. 38 92
  Ralstonia sp. UNC404CL21Col ABZR87_RS08380 RidA family protein insig. 38 97
o Shewanella oneidensis MR-1 SO1960 conserved hypothetical protein (NCBI ptt file) insig. 37 89
  Variovorax sp. SCN45 GFF3327 RidA/YER057c/UK114 superfamily, group 1 insig. 39 97
  Burkholderia phytofirmans PsJN BPHYT_RS35560 endoribonuclease L-PSP insig. 42 95
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4927 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein insig. 32 99
o Pseudomonas sp. DMC3 GFF4390 hypothetical protein insig. 31 100
  Pseudomonas fluorescens SBW25 PFLU_RS16860 RidA family protein insig. 41 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16860 RidA family protein strong 41 81
  Variovorax sp. OAS795 ABID97_RS02865 RidA family protein insig. 43 74
  Variovorax sp. OAS795 ABID97_RS01340 RidA family protein insig. 45 70
  Pseudomonas simiae WCS417 PS417_14845 endoribonuclease L-PSP insig. 40 81
  Pseudomonas fluorescens SBW25 PFLU_RS29515 RidA family protein strong 31 91
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29515 RidA family protein strong 31 91
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00035 2-iminobutanoate/2-iminopropanoate deaminase strong 31 91
  Pseudomonas simiae WCS417 PS417_27835 endoribonuclease strong 31 91
  Pseudomonas syringae pv. syringae B728a Psyr_0208 endoribonuclease L-PSP strong 30 91
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0208 endoribonuclease L-PSP strong 30 91
  Pseudomonas sp. S08-1 OH686_13545 RidA/YER057c/UK114 superfamily protein strong 33 89
  Pseudomonas sp. RS175 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase strong 31 91
  Pseudomonas sp. BP01 JOY50_RS08980 RidA family protein cofit 30 94
  Pseudomonas segetis P6 MPMX49_00037 2-iminobutanoate/2-iminopropanoate deaminase strong 32 91
  Dinoroseobacter shibae DFL-12 Dshi_0720 Endoribonuclease L-PSP (RefSeq) sig. 27 89
  Phocaeicola dorei CL03T12C01 ABI39_RS14715 RidA family protein strong 32 86
  Pseudomonas sp. DMC3 GFF420 2-iminobutanoate/2-iminopropanoate deaminase strong 31 91
  Pseudomonas fluorescens FW300-N2C3 AO356_12475 reactive intermediate/imine deaminase strong 31 91
  Synechocystis sp000284455 PCC 6803 SGL_RS16325 RidA family protein strong 35 85
  Methylophilus sp. DMC18 GFF1301 2-iminobutanoate/2-iminopropanoate deaminase cofit 35 87
  Sphingobium sp. HT1-2 GFF2064 RidA/YER057c/UK114 superfamily protein cofit 32 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18400 RidA family protein strong 32 86
  Bacteroides stercoris CC31F HMPREF1181_RS10885 RidA family protein strong 32 86
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 31 91
  Pseudomonas sp. SVBP6 COO64_RS01560 RidA family protein strong 30 91
  Pseudomonas fluorescens GW456-L13 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 30 91
  Pseudomonas fluorescens FW300-N2E3 AO353_09285 reactive intermediate/imine deaminase strong 30 91
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1205.1 hypothetical protein cofit 35 87
  Pseudomonas putida KT2440 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase strong 31 88
  Pseudomonas stutzeri RCH2 Psest_3818 endoribonuclease L-PSP, putative strong 29 92
  Sinorhizobium meliloti 1021 SM_b21157 translation initiation inhibitor protein insig. 29 89
  Pseudomonas sp. DMC3 GFF3667 2-iminobutanoate/2-iminopropanoate deaminase no data 27 85
  Azospirillum brasilense Sp245 AZOBR_RS32435 dfrA insig. 34 87
  Pseudomonas syringae pv. syringae B728a Psyr_3399 Endoribonuclease L-PSP insig. 31 90
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3399 Endoribonuclease L-PSP insig. 31 90
  Shewanella amazonensis SB2B Sama_0263 YjgF-like protein (RefSeq) strong 32 87