Homologs of PS417_06770 from Pseudomonas simiae WCS417

multidrug transporter
SEED: RND efflux system, inner membrane transporter CmeB
KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_06770 multidrug transporter strong 100 100
o Pseudomonas orientalis W4I3 QF045_RS09535 efflux RND transporter permease subunit strong 98 100
o Pseudomonas fluorescens SBW25 PFLU_RS06805 efflux RND transporter permease subunit cofit 97 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06805 efflux RND transporter permease subunit strong 97 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01515 putative efflux pump membrane transporter TtgB cofit 95 100
o Pseudomonas syringae pv. syringae B728a Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 strong 85 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 no data 85 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2824 RND efflux system, inner membrane transporter CmeB strong 83 100
o Pseudomonas fluorescens FW300-N2C3 AO356_04880 multidrug transporter strong 83 100
o Pseudomonas sp. SVBP6 COO64_RS26275 efflux RND transporter permease subunit cofit 83 100
o Pseudomonas fluorescens FW300-N2E3 AO353_17295 multidrug transporter strong 82 100
o Pseudomonas sp. DMC3 GFF2212 Toluene efflux pump membrane transporter TtgB cofit 82 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4581 RND efflux system, inner membrane transporter CmeB strong 82 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3246 RND efflux system, inner membrane transporter CmeB strong 82 100
o Pseudomonas sp. RS175 PFR28_00631 putative efflux pump membrane transporter TtgB strong 82 100
o Pseudomonas putida KT2440 PP_1385 Probable efflux pump membrane transporter TtgB strong 80 100
o Pseudomonas sp. BP01 JOY50_RS14445 ttgB multidrug efflux RND transporter permease subunit TtgB cofit 80 100
  Pseudomonas fluorescens FW300-N2C3 AO356_30440 multidrug transporter insig. 78 100
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1949 RND efflux system, inner membrane transporter CmeB insig. 78 100
o Pseudomonas aeruginosa PA14 IKLFDK_23290 multidrug efflux RND transporter permease subunit MexB strong 79 98
o Pseudomonas aeruginosa PUPa3 DQ20_RS37190 mexB;inference=COORDINATES multidrug efflux RND transporter permease subunit MexB cofit 79 98
o Pseudomonas aeruginosa MRSN321 DY961_RS22115 mexB;inference=COORDINATES multidrug efflux RND transporter permease subunit MexB strong 79 98
o Pseudomonas sp. S08-1 OH686_16050 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) cofit 77 100
o Pseudomonas stutzeri RCH2 Psest_0310 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 73 100
o Pseudomonas segetis P6 ACVTMO_RS03400 efflux RND transporter permease subunit insig. 72 99
o Klebsiella pneumoniae MKP103 KDGMDA_14835 acriflavine resistance protein B strong 68 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4379 RND efflux system, inner membrane transporter CmeB sig. 66 99
o Klebsiella michiganensis M5al BWI76_RS06775 multidrug efflux RND transporter permease subunit strong 67 97
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS10680 multidrug efflux RND transporter permease subunit cofit 67 100
o Pantoea sp. MT58 IAI47_14515 multidrug efflux RND transporter permease subunit cofit 67 100
o Rahnella sp. WP5 EX31_RS22470 multidrug efflux RND transporter permease subunit cofit 67 100
o Erwinia amylovora T8 OLJFJH_17855 multidrug efflux RND transporter permease subunit AcrB strong 68 97
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_16580 adeB hydrophobe/amphiphile efflux-1 family RND transporter no data 67 97
o Enterobacter asburiae PDN3 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family cofit 66 99
o Erwinia tracheiphila SCR3 LU632_RS18185 efflux RND transporter permease subunit no data 67 97
o Enterobacter sp. TBS_079 MPMX20_01064 Multidrug efflux pump subunit AcrB strong 66 99
o Escherichia coli BL21 ECD_00413 multidrug efflux system protein strong 65 99
o Escherichia fergusonii Becca EFB2_03596 Multidrug efflux pump subunit AcrB insig. 65 99
o Escherichia coli ECOR27 NOLOHH_01140 acrB efflux RND transporter permease AcrB insig. 65 99
o Escherichia coli ECOR38 HEPCGN_06820 acrB efflux RND transporter permease AcrB strong 65 99
o Escherichia coli ECRC62 BNILDI_22555 acrB efflux RND transporter permease AcrB insig. 65 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03212 Multidrug efflux pump subunit AcrB cofit 65 99
o Escherichia coli Nissle 1917 ECOLIN_RS02750 efflux RND transporter permease AcrB sig. 65 99
o Escherichia coli BW25113 b0462 acrB multidrug efflux system protein (NCBI) strong 65 99
o Escherichia coli ECRC100 OKFHMN_08205 acrB efflux RND transporter permease AcrB cofit 65 99
o Escherichia coli ECRC101 MCAODC_27430 acrB efflux RND transporter permease AcrB strong 65 99
o Escherichia coli ECRC102 NIAGMN_06260 acrB efflux RND transporter permease AcrB cofit 65 99
o Escherichia coli ECRC99 KEDOAH_19760 acrB efflux RND transporter permease AcrB no data 65 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2116 RND efflux system, inner membrane transporter CmeB insig. 66 97
  Klebsiella pneumoniae MKP103 KDGMDA_06465 hydrophobe/amphiphile efflux-1 family RND transporter insig. 66 97
  Klebsiella michiganensis M5al BWI76_RS25585 multidrug efflux RND transporter permease subunit insig. 66 97
o Serratia liquefaciens MT49 IAI46_16735 efflux RND transporter permease subunit insig. 64 99
o Methylophilus sp. DMC18 GFF2593 Multidrug efflux pump subunit AcrB insig. 65 98
  Rahnella sp. WP5 EX31_RS13325 efflux RND transporter permease subunit insig. 65 99
o Dickeya dadantii 3937 DDA3937_RS05735 multidrug efflux RND transporter permease subunit strong 65 97
  Enterobacter sp. TBS_079 MPMX20_04175 Multidrug export protein AcrF insig. 65 97
  Serratia liquefaciens MT49 IAI46_05185 multidrug efflux RND transporter permease subunit SdeY strong 66 97
o Pectobacterium carotovorum WPP14 HER17_RS15740 multidrug efflux RND transporter permease subunit cofit 65 99
  Escherichia coli ECOR27 NOLOHH_09440 acrF multidrug efflux RND transporter permease subunit AcrF insig. 65 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00439 Multidrug export protein AcrF insig. 65 97
  Escherichia fergusonii Becca EFB2_00558 Multidrug export protein AcrF insig. 64 97
  Escherichia coli ECRC62 BNILDI_02080 acrF multidrug efflux RND transporter permease subunit AcrF insig. 65 97
  Escherichia coli BL21 ECD_03124 multidrug efflux system protein insig. 64 97
  Escherichia coli Nissle 1917 ECOLIN_RS18755 multidrug efflux RND transporter permease subunit AcrF insig. 64 97
  Escherichia coli BW25113 b3266 acrF multidrug efflux system protein (NCBI) insig. 64 97
o Shewanella sp. ANA-3 Shewana3_4045 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) strong 65 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS02525 efflux RND transporter permease subunit strong 63 100
o Azospirillum sp. SherDot2 MPMX19_05884 Multidrug efflux pump subunit AcrB insig. 63 100
o Dickeya dianthicola ME23 DZA65_RS06115 multidrug efflux RND transporter permease subunit strong 64 100
o Dickeya dianthicola 67-19 HGI48_RS05790 multidrug efflux RND transporter permease subunit cofit 64 100
o Azospirillum brasilense Sp245 AZOBR_RS30185 multidrug transporter insig. 63 98
  Enterobacter asburiae PDN3 EX28DRAFT_3319 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 64 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04170 multidrug efflux pump strong 63 99
  Pseudomonas sp. BP01 JOY50_RS12340 efflux RND transporter permease subunit insig. 63 99
o Desulfovibrio vulgaris Hildenborough JW710 DVU2816 multidrug resistance protein (TIGR) sig. 62 99
o Shewanella oneidensis MR-1 SO4692 AcrB/AcrD/AcrF family protein (NCBI ptt file) strong 63 100
o Burkholderia phytofirmans PsJN BPHYT_RS16170 multidrug efflux RND transporter permease subunit no data 63 99
o Shewanella amazonensis SB2B Sama_3554 AcrB/AcrD/AcrF family protein (RefSeq) strong 62 100
o Cupriavidus basilensis FW507-4G11 RR42_RS32420 multidrug efflux RND transporter permease subunit insig. 63 100
o Paraburkholderia graminis OAS925 ABIE53_003408 multidrug efflux pump strong 63 99
  Paraburkholderia sabiae LMG 24235 QEN71_RS29865 efflux RND transporter permease subunit insig. 63 99
o Shewanella loihica PV-4 Shew_0032 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) strong 63 97
o Rhodospirillum rubrum S1H Rru_A2051 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) cofit 64 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1794.1 RND efflux system, inner membrane transporter CmeB insig. 62 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS19795 multidrug efflux RND transporter permease subunit insig. 63 99
o Ralstonia solanacearum UW163 UW163_RS19380 multidrug efflux RND transporter permease subunit insig. 63 99
o Ralstonia solanacearum PSI07 RPSI07_RS03390 multidrug efflux RND transporter permease subunit insig. 63 98
o Caulobacter crescentus NA1000 CCNA_00850 cation/multidrug efflux pump acrB2 strong 64 97
o Caulobacter crescentus NA1000 Δfur CCNA_00850 cation/multidrug efflux pump acrB2 cofit 64 97
o Ralstonia solanacearum GMI1000 RS_RS21030 multidrug efflux RND transporter permease subunit insig. 63 98
o Herbaspirillum seropedicae SmR1 HSERO_RS06815 multidrug transporter insig. 61 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18285 efflux RND transporter permease subunit insig. 61 100
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19190 efflux RND transporter permease subunit strong 61 97
  Serratia liquefaciens MT49 IAI46_18690 multidrug efflux RND transporter permease AcrD insig. 59 98
o Bosea sp. OAE506 ABIE41_RS01595 efflux RND transporter permease subunit insig. 59 100
  Rahnella sp. WP5 EX31_RS22805 multidrug efflux RND transporter permease AcrD insig. 60 98
o Acinetobacter baumannii LAC-4 RR41_RS03865 multidrug efflux RND transporter permease subunit AdeJ no data 57 100
  Klebsiella pneumoniae MKP103 KDGMDA_27695 multidrug efflux RND transporter permease AcrD insig. 58 100
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2188 RND efflux system, inner membrane transporter CmeB cofit 58 100
  Herbaspirillum seropedicae SmR1 HSERO_RS23055 multidrug transporter insig. 58 99