Homologs of EX28DRAFT_0069 from Enterobacter asburiae PDN3

Superfamily II DNA and RNA helicases
SEED: ATP-dependent RNA helicase SrmB
KEGG: ATP-dependent RNA helicase SrmB

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Enterobacter asburiae PDN3 EX28DRAFT_0069 Superfamily II DNA and RNA helicases insig. 100 100
o Enterobacter sp. TBS_079 MPMX20_03447 ATP-dependent RNA helicase SrmB strong 99 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2104 ATP-dependent RNA helicase SrmB insig. 91 100
o Pantoea sp. MT58 IAI47_04835 ATP-dependent RNA helicase SrmB strong 83 100
o Escherichia coli ECRC62 BNILDI_11835 srmB ATP-dependent RNA helicase SrmB sig. 88 100
o Klebsiella michiganensis M5al BWI76_RS21370 ATP-dependent RNA helicase SrmB insig. 87 100
o Serratia liquefaciens MT49 IAI46_19600 ATP-dependent RNA helicase SrmB strong 80 99
o Escherichia coli BL21 ECD_02470 ATP-dependent RNA helicase strong 87 100
o Escherichia fergusonii Becca EFB2_01320 ATP-dependent RNA helicase SrmB strong 87 100
o Escherichia coli ECOR27 NOLOHH_13035 srmB ATP-dependent RNA helicase SrmB strong 87 100
o Escherichia coli ECOR38 HEPCGN_20505 srmB ATP-dependent RNA helicase SrmB strong 87 100
o Escherichia coli ECRC101 OKFHMN_21360 srmB ATP-dependent RNA helicase SrmB insig. 87 100
o Escherichia coli ECRC101 MCAODC_11890 srmB ATP-dependent RNA helicase SrmB sig. 87 100
o Escherichia coli ECRC102 NIAGMN_19130 srmB ATP-dependent RNA helicase SrmB insig. 87 100
o Escherichia coli ECRC98 JDDGAC_25025 srmB ATP-dependent RNA helicase SrmB no data 87 100
o Escherichia coli ECRC99 KEDOAH_06860 srmB ATP-dependent RNA helicase SrmB no data 87 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01131 ATP-dependent RNA helicase SrmB strong 87 100
o Escherichia coli Nissle 1917 ECOLIN_RS14580 ATP-dependent RNA helicase SrmB cofit 87 100
o Escherichia coli BW25113 b2576 srmB ATP-dependent RNA helicase (NCBI) strong 87 100
o Erwinia tracheiphila SCR3 LU632_RS15440 srmB ATP-dependent RNA helicase SrmB cofit 82 98
o Pectobacterium carotovorum WPP14 HER17_RS05765 ATP-dependent RNA helicase SrmB cofit 82 100
o Rahnella sp. WP5 EX31_RS21785 ATP-dependent RNA helicase SrmB cofit 77 98
o Dickeya dadantii 3937 DDA3937_RS15780 ATP-dependent RNA helicase SrmB strong 81 100
o Dickeya dianthicola ME23 DZA65_RS16945 ATP-dependent RNA helicase SrmB cofit 81 99
o Dickeya dianthicola 67-19 HGI48_RS15865 ATP-dependent RNA helicase SrmB cofit 81 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_03475 ATP-dependent RNA helicase SrmB cofit 63 86
o Alteromonas macleodii MIT1002 MIT1002_00941 ATP-dependent RNA helicase SrmB no data 58 85
  Shewanella amazonensis SB2B Sama_2742 ATP-dependent RNA helicase SrmB (RefSeq) cofit 57 85
o Shewanella loihica PV-4 Shew_0767 ATP-dependent RNA helicase SrmB (RefSeq) strong 57 85
o Shewanella oneidensis MR-1 SO0947 srmB ATP-dependent RNA helicase SrmB (NCBI ptt file) strong 57 85
o Shewanella sp. ANA-3 Shewana3_3336 ATP-dependent RNA helicase SrmB (RefSeq) strong 57 85
o Azospirillum sp. SherDot2 MPMX19_02011 RNA helicase CrhR strong 46 89
  Azospirillum sp. SherDot2 MPMX19_06125 RNA helicase CrhR insig. 46 85
  Burkholderia phytofirmans PsJN BPHYT_RS12280 RNA helicase insig. 42 87
  Paraburkholderia graminis OAS925 ABIE53_002535 superfamily II DNA/RNA helicase strong 42 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00581 Superfamily II DNA and RNA helicase no data 42 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS06275 DEAD/DEAH box helicase insig. 42 87
  Ralstonia solanacearum PSI07 RPSI07_RS19465 ATP-dependent helicase insig. 41 87
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14000 ATP-dependent helicase insig. 41 88
  Ralstonia solanacearum UW163 UW163_RS15810 ATP-dependent helicase insig. 41 88
  Ralstonia solanacearum GMI1000 RS_RS04735 RNA helicase insig. 41 87
  Ralstonia sp. UNC404CL21Col ABZR87_RS09700 DEAD/DEAH box helicase strong 41 87
  Cupriavidus basilensis FW507-4G11 RR42_RS14720 RNA helicase no data 41 88
o Pseudomonas putida KT2440 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis strong 42 87
  Herbaspirillum seropedicae SmR1 HSERO_RS17155 RNA helicase insig. 38 91
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4451 ATP-dependent RNA helicase SrmB strong 39 98
  Pseudomonas sp. RS175 PFR28_00756 ATP-dependent RNA helicase RhlE insig. 42 86
  Pseudomonas syringae pv. syringae B728a Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal sig. 39 97
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal insig. 39 97
  Agrobacterium fabrum C58 Atu1833 ATP-dependent RNA helicase no data 43 84
  Pseudomonas fluorescens FW300-N2E3 AO353_18305 RNA helicase sig. 42 87
  Pseudomonas simiae WCS417 PS417_20275 RNA helicase no data 39 98
  Shewanella loihica PV-4 Shew_2452 DEAD/DEAH box helicase domain-containing protein (RefSeq) no data 41 90
  Pseudomonas stutzeri RCH2 Psest_1627 Superfamily II DNA and RNA helicases strong 42 86
  Pseudomonas fluorescens FW300-N2C3 AO356_04210 RNA helicase no data 41 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2675 ATP-dependent RNA helicase SrmB insig. 41 87
  Pectobacterium carotovorum WPP14 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase insig. 41 93
  Shewanella oneidensis MR-1 SO2838 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) insig. 40 93
  Pseudomonas fluorescens SBW25 PFLU_RS22195 DEAD/DEAH box helicase strong 42 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22195 DEAD/DEAH box helicase strong 42 87
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_543 ATP-dependent RNA helicase SrmB no data 41 87
o Kangiella aquimarina DSM 16071 B158DRAFT_1312 Superfamily II DNA and RNA helicases insig. 39 85
  Magnetospirillum magneticum AMB-1 AMB_RS07215 ATP-dependent helicase insig. 45 82
  Pseudomonas sp. S08-1 OH686_05415 ATP-dependent RNA helicase SrmB cofit 44 86
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4527.1 ATP-dependent RNA helicase RhlE strong 41 98
  Rhizobium sp. OAE497 ABIE40_RS10055 DEAD/DEAH box helicase sig. 42 83
  Shewanella sp. ANA-3 Shewana3_2606 DEAD/DEAH box helicase domain-containing protein (RefSeq) no data 41 85
  Bosea sp. OAE506 ABIE41_RS22380 DEAD/DEAH box helicase insig. 43 83
  Castellaniella sp019104865 MT123 ABCV34_RS12515 DEAD/DEAH box helicase cofit 40 90
  Shewanella oneidensis MR-1 SO3783 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) insig. 39 95
  Paraburkholderia graminis OAS925 ABIE53_003462 ATP-dependent RNA helicase RhlE sig. 42 87
  Pseudomonas stutzeri RCH2 Psest_0312 Superfamily II DNA and RNA helicases strong 38 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04222 ATP-dependent RNA helicase RhlE sig. 42 87
  Agrobacterium fabrum C58 Atu2333 ATP-dependent RNA helicase strong 42 82
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5046 ATP-dependent RNA helicase PA3950 strong 38 97
  Pantoea sp. MT58 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase strong 40 94
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2736 ATP-dependent RNA helicase PA3950 sig. 38 97
  Dickeya dadantii 3937 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase insig. 42 82
  Erwinia tracheiphila SCR3 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase no data 40 94
  Shewanella sp. ANA-3 Shewana3_0810 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 39 93
  Rhodanobacter denitrificans MT42 LRK55_RS02395 DEAD/DEAH box helicase insig. 43 85
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02640 DEAD/DEAH box helicase sig. 43 85
  Pseudomonas fluorescens FW300-N2E3 AO353_06265 DEAD/DEAH box helicase strong 38 97
  Pseudomonas sp. RS175 PFR28_03825 ATP-dependent RNA helicase RhlE insig. 40 88
  Dickeya dianthicola ME23 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase no data 42 82
  Pseudomonas sp. S08-1 OH686_10835 ATP-dependent RNA helicase RhlE cofit 42 82
  Vibrio cholerae E7946 ATCC 55056 CSW01_15010 ATP-dependent RNA helicase RhlE insig. 40 88
  Dickeya dianthicola 67-19 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase insig. 42 82
  Burkholderia phytofirmans PsJN BPHYT_RS16445 RNA helicase strong 42 87
  Rhodanobacter sp. FW510-T8 OKGIIK_09705 ATP-dependent RNA helicase cofit 42 83
  Desulfovibrio vulgaris Hildenborough JW710 DVU1982 rhlE ATP-dependent RNA helicase RhlE (TIGR) insig. 42 82
  Shewanella loihica PV-4 Shew_0604 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 40 88
  Pseudomonas fluorescens FW300-N2C3 AO356_15530 DEAD/DEAH box helicase sig. 38 97
  Pseudomonas putida KT2440 PP_4980 ATP-dependent RNA helicase sig. 41 84
  Sinorhizobium meliloti 1021 SMc00522 ATP-dependent RNA helicase strong 43 79
  Escherichia coli ECOR38 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD strong 40 94
  Enterobacter asburiae PDN3 EX28DRAFT_3211 Superfamily II DNA and RNA helicases no data 43 82
  Pseudomonas fluorescens FW300-N2E3 AO353_08030 DEAD/DEAH box helicase sig. 41 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1409 ATP-dependent RNA helicase PA3950 insig. 40 88
  Rhodanobacter denitrificans MT42 LRK55_RS02405 DEAD/DEAH box helicase cofit 41 83