Homologs of EX28DRAFT_0044 from Enterobacter asburiae PDN3

Zn-finger domain associated with topoisomerase type I
SEED: Similar to C-terminal Zn-finger domain of DNA topoisomerase I
KEGG: putative DNA topoisomerase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Enterobacter asburiae PDN3 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I cofit 100 100
o Enterobacter sp. TBS_079 MPMX20_04191 DNA topoisomerase 1 sig. 96 100
o Klebsiella pneumoniae MKP103 KDGMDA_06525 Uncharacterized protein YrdD insig. 86 98
o Klebsiella michiganensis M5al BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein sig. 84 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I insig. 87 98
o Escherichia coli ECOR38 HEPCGN_16375 yrdD Uncharacterized protein YrdD sig. 84 98
o Escherichia coli ECRC62 BNILDI_02175 yrdD Uncharacterized protein YrdD cofit 84 98
o Escherichia fergusonii Becca EFB2_00540 DNA topoisomerase 1 cofit 84 98
o Escherichia coli Nissle 1917 ECOLIN_RS18850 type I DNA topoisomerase insig. 84 98
o Escherichia coli ECOR27 NOLOHH_09345 yrdD Uncharacterized protein YrdD insig. 84 98
o Escherichia coli BL21 ECD_03134 ssDNA-binding protein, function unknown strong 84 98
o Escherichia coli ECRC100 OKFHMN_17555 yrdD Uncharacterized protein YrdD cofit 84 98
o Escherichia coli ECRC101 MCAODC_08075 yrdD Uncharacterized protein YrdD insig. 84 98
o Escherichia coli ECRC102 NIAGMN_15315 yrdD Uncharacterized protein YrdD insig. 84 98
o Escherichia coli ECRC98 JDDGAC_21175 yrdD Uncharacterized protein YrdD insig. 84 98
o Escherichia coli ECRC99 KEDOAH_10595 yrdD Uncharacterized protein YrdD no data 84 98
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00420 DNA topoisomerase 1 insig. 84 98
o Escherichia coli BW25113 b3283 yrdD predicted DNA topoisomerase (NCBI) sig. 84 98
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS22550 hypothetical protein cofit 75 99
o Pantoea sp. MT58 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein sig. 76 99
o Erwinia amylovora T8 OLJFJH_03695 DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains insig. 73 100
o Serratia liquefaciens MT49 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 71 98
o Rahnella sp. WP5 EX31_RS15960 hypothetical protein insig. 71 100
o Pectobacterium carotovorum WPP14 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 70 99
o Erwinia tracheiphila SCR3 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 69 100
o Dickeya dianthicola 67-19 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 69 99
o Dickeya dadantii 3937 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 68 99
o Dickeya dianthicola ME23 DZA65_RS20325 hypothetical protein insig. 69 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12495 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 68 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_00255 DNA topoisomerase insig. 56 92
o Shewanella sp. ANA-3 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 47 91
o Shewanella oneidensis MR-1 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) sig. 46 91
o Shewanella loihica PV-4 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 46 91
o Shewanella amazonensis SB2B Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) insig. 47 92
o Alteromonas macleodii MIT1002 MIT1002_00024 DNA topoisomerase 1 cofit 44 84
  Desulfovibrio vulgaris Hildenborough JW710 DVU3389 topA DNA topoisomerase I (TIGR) no data 41 93
  Desulfovibrio vulgaris Miyazaki F DvMF_2069 DNA topoisomerase I (RefSeq) no data 38 98
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 49 47
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 49 47
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 27 65
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 27 65
  Rhodopseudomonas palustris CGA009 TX73_016155 type I DNA topoisomerase strong 40 48
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 38 39
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 35 45
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 38 49
  Rhizobium sp. OAE497 ABIE40_RS07355 type I DNA topoisomerase sig. 41 37
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 40 45
  Agrobacterium fabrum C58 Atu1304 DNA topoisomerase I no data 45 37
  Sinorhizobium meliloti 1021 SMc01364 DNA topoisomerase I insig. 42 37
  Bosea sp. OAE506 ABIE41_RS17240 type I DNA topoisomerase no data 44 37
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 36 49
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 36 49
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 56 22
  Phaeobacter inhibens DSM 17395 PGA1_c06220 DNA topoisomerase TopA no data 34 49
  Rhodospirillum rubrum S1H Rru_A3202 DNA topoisomerase (NCBI) strong 33 52
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 58 19
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 58 19
  Sphingobium sp. HT1-2 GFF115 DNA topoisomerase I (EC 5.99.1.2) no data 41 32
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 54 21
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04230 type I DNA topoisomerase no data 54 20
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 40 37
  Sinorhizobium meliloti 1021 SMc01364 DNA topoisomerase I insig. 53 19
  Azospirillum sp. SherDot2 MPMX19_01509 DNA topoisomerase 1 no data 50 24
  Agrobacterium fabrum C58 Atu1304 DNA topoisomerase I no data 53 19
  Rhizobium sp. OAE497 ABIE40_RS07355 type I DNA topoisomerase sig. 53 19
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 35 41
  Rhodospirillum rubrum S1H Rru_A3202 DNA topoisomerase (NCBI) strong 48 24
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2568.1 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster insig. 57 19
  Azospirillum brasilense Sp245 AZOBR_RS15890 DNA topoisomerase I strong 45 26
  Bosea sp. OAE506 ABIE41_RS17240 type I DNA topoisomerase no data 56 18
  Sphingobium sp. HT1-2 GFF115 DNA topoisomerase I (EC 5.99.1.2) no data 40 37
  Pseudomonas syringae pv. syringae B728a Psyr_1473 DNA topoisomerase III insig. 46 22
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1473 DNA topoisomerase III insig. 46 22
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04230 type I DNA topoisomerase no data 36 37
  Azospirillum sp. SherDot2 MPMX19_01509 DNA topoisomerase 1 no data 36 43
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 56 18
  Pseudomonas sp. DMC3 GFF1274 DNA topoisomerase 1 no data 32 43
  Pseudomonas aeruginosa PA14 IKLFDK_15320 type I DNA topoisomerase no data 27 50
  Pseudomonas fluorescens FW300-N2C3 AO356_00120 DNA topoisomerase III insig. 50 18
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04230 type I DNA topoisomerase no data 35 44
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 33 41
  Azospirillum brasilense Sp245 AZOBR_RS15890 DNA topoisomerase I strong 45 23
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05145 NERD domain-containing protein insig. 55 16
  Methylophilus sp. DMC18 GFF1540 DNA topoisomerase 1 no data 35 28
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 31 43
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 31 43
  Dinoroseobacter shibae DFL-12 Dshi_1137 DNA topoisomerase I (RefSeq) no data 38 37
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05145 NERD domain-containing protein insig. 46 20
  Pseudomonas fluorescens SBW25 PFLU_RS07665 type I DNA topoisomerase strong 31 43
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07665 type I DNA topoisomerase strong 31 43
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01650 DNA topoisomerase 1 no data 31 43
  Pseudomonas simiae WCS417 PS417_07590 DNA topoisomerase I no data 31 43
  Pseudomonas fluorescens FW300-N2C3 AO356_02315 DNA topoisomerase I strong 31 43
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) no data 31 43
  Pseudomonas sp. RS175 PFR28_01113 DNA topoisomerase 1 strong 31 43
  Acinetobacter baumannii LAC-4 RR41_RS16785 type I DNA topoisomerase no data 27 66
  Dinoroseobacter shibae DFL-12 Dshi_1137 DNA topoisomerase I (RefSeq) no data 46 20
  Pantoea sp. MT58 IAI47_09235 type I DNA topoisomerase insig. 35 38
  Escherichia coli BL21 ECD_01250 DNA topoisomerase I, omega subunit strong 24 48
  Escherichia fergusonii Becca EFB2_02653 DNA topoisomerase 1 strong 24 48