Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Dechlorosoma suillum PS | Dsui_3287 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | cofit | 100 | 100 |
| Pseudomonas stutzeri RCH2 | Psest_1725 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | strong | 32 | 93 |
| Pseudomonas putida KT2440 | PP_4363 | | Sensor histidine kinase/response regulator | sig. | 30 | 93 |
| Pseudomonas syringae pv. syringae B728a | Psyr_3451 | | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E | insig. | 30 | 93 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3451 | | Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E | insig. | 30 | 93 |
| Pseudomonas sp. S08-1 | OH686_02805 | | Serine phosphatase RsbU, regulator of sigma subunit / Serine-protein kinase RsbW | cofit | 30 | 93 |
| Marinobacter adhaerens HP15 | HP15_2320 | | response regulator receiver protein | insig. | 30 | 93 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3610 | | Serine phosphatase RsbU, regulator of sigma subunit | insig. | 30 | 93 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_03805 | | chemotaxis protein CheY | sig. | 30 | 93 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_18710 | | chemotaxis protein CheY | sig. | 29 | 94 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2587 | | Serine phosphatase RsbU, regulator of sigma subunit | strong | 31 | 93 |
| Pseudomonas fluorescens SBW25 | PFLU_RS21745 | | fused response regulator/phosphatase | insig. | 30 | 93 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS21745 | | fused response regulator/phosphatase | sig. | 30 | 93 |
| Pseudomonas sp. RS175 | PFR28_00838 | | Sensor histidine kinase RcsC | sig. | 30 | 93 |
| Alteromonas macleodii MIT1002 | MIT1002_01320 | | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP | cofit | 28 | 92 |
| Pseudomonas simiae WCS417 | PS417_19775 | | chemotaxis protein CheY | insig. | 30 | 93 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_4347 | | Serine phosphatase RsbU, regulator of sigma subunit | insig. | 28 | 93 |
| Azospirillum sp. SherDot2 | MPMX19_06045 | | putative cyclic di-GMP phosphodiesterase | insig. | 56 | 34 |
| Dechlorosoma suillum PS | Dsui_0777 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | cofit | 52 | 35 |
| Shewanella amazonensis SB2B | Sama_2951 | | response regulator receiver protein (RefSeq) | insig. | 53 | 34 |
| Dechlorosoma suillum PS | Dsui_3334 | | PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein | cofit | 48 | 40 |
| Shewanella loihica PV-4 | Shew_3199 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 50 | 34 |
| Acidovorax sp. GW101-3H11 | Ac3H11_2270 | | Pole remodelling regulatory diguanylate cyclase | insig. | 51 | 36 |
| Pseudomonas sp. S08-1 | OH686_00410 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 60 | 31 |
| Shewanella oneidensis MR-1 | SO0860 | | response regulator (NCBI ptt file) | insig. | 51 | 34 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_19505 | | two-component system sensor histidine kinase/response regulator | insig. | 27 | 93 |
| Magnetospirillum magneticum AMB-1 | AMB_RS09310 | | two-component system response regulator | insig. | 49 | 36 |
| Shewanella oneidensis MR-1 | SO4003 | | response regulator (NCBI ptt file) | insig. | 49 | 36 |
| Shewanella sp. ANA-3 | Shewana3_3418 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 51 | 34 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_1097 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 49 | 35 |
| Shewanella sp. ANA-3 | Shewana3_0479 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 49 | 32 |
| Azospirillum sp. SherDot2 | MPMX19_02025 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 55 | 31 |
| Pseudomonas sp. S08-1 | OH686_07455 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 50 | 34 |
| Dechlorosoma suillum PS | Dsui_0919 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | insig. | 47 | 38 |
| Azospirillum brasilense Sp245 | AZOBR_RS03050 | | diguanylate cyclase | sig. | 54 | 31 |
| Magnetospirillum magneticum AMB-1 | AMB_RS20960 | | two-component system response regulator | cofit | 46 | 35 |
| Dechlorosoma suillum PS | Dsui_1715 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | cofit | 27 | 92 |
| Shewanella amazonensis SB2B | Sama_0065 | | response regulator receiver protein (RefSeq) | insig. | 42 | 51 |
| Shewanella amazonensis SB2B | Sama_3111 | | response regulator receiver protein (RefSeq) | insig. | 53 | 31 |
| Acidovorax sp. GW101-3H11 | Ac3H11_4352 | | Response regulator | insig. | 56 | 31 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS34710 | | chemotaxis protein CheY | insig. | 44 | 38 |
| Shewanella loihica PV-4 | Shew_3790 | | response regulator receiver modulated diguanylate cyclase (RefSeq) | insig. | 37 | 54 |
| Pseudomonas sp. S08-1 | OH686_23605 | | Response regulator c-di-GMP phosphodiesterase, RpfG family | insig. | 46 | 34 |
| Azospirillum brasilense Sp245 | AZOBR_RS22690 | | sensor protein | insig. | 46 | 39 |
| Alteromonas macleodii MIT1002 | MIT1002_00763 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 51 | 31 |
| Magnetospirillum magneticum AMB-1 | AMB_RS09305 | | two-component system response regulator | insig. | 44 | 37 |
| Pseudomonas sp. S08-1 | OH686_23615 | | Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY | insig. | 41 | 43 |
| Acidovorax sp. GW101-3H11 | Ac3H11_3644 | | Pole remodelling regulatory diguanylate cyclase | insig. | 45 | 36 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS31465 | | diguanylate cyclase | insig. | 53 | 31 |
| Alteromonas macleodii MIT1002 | MIT1002_01768 | | Cyclic di-GMP phosphodiesterase response regulator RpfG | insig. | 48 | 32 |
| Azospirillum sp. SherDot2 | MPMX19_01522 | | Response regulator PleD | insig. | 54 | 30 |
| Pseudomonas syringae pv. syringae B728a | Psyr_2939 | | response regulator receiver modulated diguanylate cyclase | no data | 50 | 32 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2939 | | response regulator receiver modulated diguanylate cyclase | no data | 50 | 32 |
| Acidovorax sp. GW101-3H11 | Ac3H11_2310 | | Pole remodelling regulatory diguanylate cyclase | insig. | 44 | 35 |
| Shewanella sp. ANA-3 | Shewana3_3334 | | response regulator receiver modulated metal dependent phosphohydrolase (RefSeq) | insig. | 47 | 32 |
| Phocaeicola dorei CL03T12C01 | ABI39_RS20605 | | response regulator | insig. | 45 | 34 |
| Azospirillum brasilense Sp245 | AZOBR_RS16180 | | diguanylate cyclase | strong | 54 | 30 |
| Shewanella sp. ANA-3 | Shewana3_4015 | | response regulator receiver modulated diguanylate cyclase (RefSeq) | cofit | 48 | 30 |
| Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS06810 | | response regulator | insig. | 44 | 34 |
| Acidovorax sp. GW101-3H11 | Ac3H11_2271 | | Response regulator | insig. | 37 | 38 |
| Magnetospirillum magneticum AMB-1 | AMB_RS13380 | | fused response regulator/phosphatase | insig. | 28 | 93 |
| Dechlorosoma suillum PS | Dsui_2782 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | no data | 41 | 34 |
| Azospirillum brasilense Sp245 | AZOBR_RS22685 | | response regulator PleD (with diguanylate cyclase and response regulator receiver domains) (fragment) | insig. | 51 | 29 |
| Shewanella sp. ANA-3 | Shewana3_0481 | | response regulator receiver protein (RefSeq) | cofit | 39 | 33 |
| Variovorax sp. SCN45 | GFF2488 | | Two-component transcriptional response regulator, LuxR family | insig. | 44 | 34 |
| Bacteroides stercoris CC31F | HMPREF1181_RS15245 | | response regulator | insig. | 43 | 35 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_06795 | | two-component system response regulator | insig. | 36 | 40 |
| Shewanella loihica PV-4 | Shew_0981 | | response regulator receiver protein (RefSeq) | insig. | 46 | 31 |
| Burkholderia phytofirmans PsJN | BPHYT_RS30905 | | histidine kinase | insig. | 41 | 38 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2188.1 | | two-component system regulatory protein | insig. | 46 | 35 |
| Paraburkholderia graminis OAS925 | ABIE53_004192 | | PAS domain S-box-containing protein | strong | 41 | 38 |
| Agrobacterium fabrum C58 | Atu1297 | | two component response regulator | insig. | 47 | 36 |
| Variovorax sp. OAS795 | ABID97_RS23505 | | response regulator transcription factor | insig. | 44 | 34 |
| Rhodopseudomonas palustris CGA009 | TX73_016195 | | PleD family two-component system response regulator | insig. | 53 | 29 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03106 | | PAS domain S-box-containing protein | insig. | 40 | 38 |
| Caulobacter crescentus NA1000 | CCNA_02546 | | GGDEF/response regulator protein PleD | strong | 50 | 29 |
| Caulobacter crescentus NA1000 Δfur | CCNA_02546 | | GGDEF/response regulator protein PleD | cofit | 50 | 29 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS18655 | | response regulator | insig. | 40 | 31 |
| Marinobacter adhaerens HP15 | HP15_1054 | | multi-sensor signal transduction histidine kinase | strong | 40 | 35 |
| Dechlorosoma suillum PS | Dsui_3468 | | Response regulator receiver domain protein,histidine kinase | cofit | 39 | 37 |
| Phaeobacter inhibens DSM 17395 | PGA1_c34880 | | putative response regulator | strong | 24 | 91 |
| Sinorhizobium meliloti 1021 | SMc01370 | | response regulator PleD | insig. | 48 | 32 |
| Acidovorax sp. GW101-3H11 | Ac3H11_3695 | | Two-component response regulator | sig. | 43 | 33 |
| Bacteroides ovatus ATCC 8483 | BACOVA_04086 | | response regulator receiver domain protein | insig. | 40 | 34 |
| Bosea sp. OAE506 | ABIE41_RS18170 | | PleD family two-component system response regulator | insig. | 45 | 35 |
| Pseudomonas simiae WCS417 | PS417_11585 | | LuxR family transcriptional regulator | insig. | 35 | 55 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4462 | | Serine phosphatase RsbU, regulator of sigma subunit | insig. | 28 | 94 |
| Pseudomonas fluorescens SBW25 | PFLU_RS15265 | | EAL domain-containing response regulator | insig. | 43 | 36 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS15265 | | EAL domain-containing response regulator | insig. | 43 | 36 |
| Parabacteroides merdae CL09T00C40 | HMPREF1078_RS16335 | | hybrid sensor histidine kinase/response regulator transcription factor | cofit | 40 | 30 |
| Ralstonia sp. UNC404CL21Col | ABZR87_RS22750 | | response regulator transcription factor | insig. | 40 | 32 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS32075 | | response regulator | insig. | 37 | 46 |
| Pseudomonas fluorescens SBW25 | PFLU_RS12370 | | response regulator transcription factor | insig. | 35 | 55 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS12370 | | response regulator transcription factor | insig. | 35 | 55 |
| Sinorhizobium meliloti 1021 | SM_b20610 | | two-component response regulator protein | insig. | 41 | 31 |
| Bacteroides thetaiotaomicron VPI-5482 | BT1058 | | two-component system sensor histidine kinase (NCBI ptt file) | strong | 39 | 34 |
| Shewanella oneidensis MR-1 | SO2119 | | response regulator (NCBI ptt file) | cofit | 24 | 93 |
o | Dinoroseobacter shibae DFL-12 | Dshi_3485 | | response regulator receiver modulated serine phosphatase (RefSeq) | sig. | 25 | 94 |
| Dinoroseobacter shibae DFL-12 | Dshi_2820 | | response regulator receiver modulated diguanylate cyclase (RefSeq) | sig. | 48 | 29 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS11200 | | hybrid sensor histidine kinase/response regulator transcription factor | insig. | 40 | 33 |