Homologs of CCNA_03362 from Caulobacter crescentus NA1000

ECF-family RNA polymerase sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Caulobacter crescentus NA1000 CCNA_03362 ECF-family RNA polymerase sigma factor strong 100 100
o Caulobacter crescentus NA1000 Δfur CCNA_03362 ECF-family RNA polymerase sigma factor cofit 100 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS01090 sigma-70 family RNA polymerase sigma factor insig. 55 97
o Variovorax sp. OAS795 ABID97_RS16825 sigma-70 family RNA polymerase sigma factor insig. 50 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS20845 sigma-70 family RNA polymerase sigma factor insig. 49 98
o Herbaspirillum seropedicae SmR1 HSERO_RS16195 RNA polymerase sigma factor insig. 49 96
o Burkholderia phytofirmans PsJN BPHYT_RS25505 RNA polymerase sigma factor insig. 46 98
  Acidovorax sp. GW101-3H11 Ac3H11_1827 RNA polymerase sigma-70 factor, ECF subfamily insig. 47 98
o Variovorax sp. SCN45 GFF320 RNA polymerase ECF-type sigma factor insig. 48 96
  Burkholderia phytofirmans PsJN BPHYT_RS25560 RNA polymerase sigma factor insig. 47 97
o Bosea sp. OAE506 ABIE41_RS02435 sigma-70 family RNA polymerase sigma factor insig. 46 98
o Agrobacterium fabrum C58 Atu2268 ECF family sigma factor insig. 50 92
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3636 RNA polymerase sigma factor, sigma-70 family insig. 44 98
o Dechlorosoma suillum PS Dsui_0155 RNA polymerase sigma factor, sigma-70 family strong 47 97
o Pseudomonas putida KT2440 PP_0994 putative RNA polymerase sigma factor insig. 43 92
o Azospirillum sp. SherDot2 MPMX19_04570 ECF RNA polymerase sigma factor SigF insig. 44 92
o Pseudomonas stutzeri RCH2 Psest_0114 RNA polymerase sigma factor, sigma-70 family insig. 44 96
o Rhodopseudomonas palustris CGA009 TX73_009325 sigma-70 family RNA polymerase sigma factor insig. 44 92
o Rhizobium sp. OAE497 ABIE40_RS01010 sigma-70 family RNA polymerase sigma factor insig. 41 94
  Rhizobium sp. OAE497 ABIE40_RS19610 sigma-70 family RNA polymerase sigma factor insig. 43 85
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01786 RNA polymerase sigma-70 factor, ECF subfamily insig. 39 96
o Sinorhizobium meliloti 1021 SM_b20531 RNA polymerase sigma factor insig. 38 94
o Rhodanobacter sp. FW510-T8 OKGIIK_03490 hypothetical protein insig. 43 88
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS09080 sigma-70 family RNA polymerase sigma factor cofit 41 88
  Rhodanobacter denitrificans MT42 LRK55_RS14380 sigma-70 family RNA polymerase sigma factor insig. 39 94
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS14665 sigma-70 family RNA polymerase sigma factor insig. 39 94
o Pantoea sp. MT58 IAI47_20240 sigma-70 family RNA polymerase sigma factor insig. 35 95
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 38 91
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 34 73
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 32 89
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 31 91
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 30 91
  Azospirillum sp. SherDot2 MPMX19_05475 hypothetical protein no data 36 77
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 30 80
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 30 88
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1738 RNA polymerase sigma-54 factor RpoN insig. 38 53
  Magnetospirillum magneticum AMB-1 AMB_RS09285 RNA polymerase sigma factor no data 37 77
  Shewanella amazonensis SB2B Sama_2036 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 88
  Mycobacterium tuberculosis H37Rv Rv0735 Probable alternative RNA polymerase sigma factor SigL insig. 34 74
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 34 91
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 29 92
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 28 85
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19605 RNA polymerase insig. 27 75
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 25 74
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 24 88
  Phocaeicola dorei CL03T12C01 ABI39_RS04680 RNA polymerase sigma factor insig. 30 74
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18610 RNA polymerase sigma-70 factor insig. 27 79
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 25 88
  Mycobacterium tuberculosis H37Rv Rv3911 Possible alternative RNA polymerase sigma factor SigM insig. 32 61
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 25 88
  Mycobacterium tuberculosis H37Rv Rv3414c Probable alternative RNA polymerase sigma-D factor SigD sig. 29 97
  Fusobacterium nucleatum SB010 HUW76_07635 RNA polymerase sigma factor no data 27 69
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 32 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0778 RNA polymerase sigma factor, sigma-70 family insig. 31 83
o Cupriavidus basilensis FW507-4G11 RR42_RS35625 RNA polymerase sigma24 factor insig. 31 92
o Castellaniella sp019104865 MT123 ABCV34_RS09955 sigma-70 family RNA polymerase sigma factor insig. 30 93
  Bacteroides stercoris CC31F HMPREF1181_RS02545 sigma-70 family RNA polymerase sigma factor insig. 29 78
  Marinobacter adhaerens HP15 HP15_342 RNA polymerase sigma factor SigE insig. 28 78
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 26 74
  Pseudomonas simiae WCS417 PS417_00810 RNA polymerase sigma factor insig. 33 69
  Lysobacter sp. OAE881 ABIE51_RS05545 RNA polymerase sigma factor insig. 36 69
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 35 85
  Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 35 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12120 RNA polymerase sigma factor sig. 30 74
  Bacteroides ovatus ATCC 8483 BACOVA_03129 Sigma-70 region 2 insig. 23 98
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13165 RNA polymerase sigma factor insig. 23 77
  Bacteroides ovatus ATCC 8483 BACOVA_01066 hypothetical protein insig. 27 80
  Pseudomonas fluorescens SBW25 PFLU_RS00840 RNA polymerase sigma factor insig. 33 69
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00840 RNA polymerase sigma factor sig. 33 69
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07135 RNA polymerase sigma factor insig. 26 66
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 29 85
  Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 24 92
  Lysobacter sp. OAE881 ABIE51_RS18540 sigma-70 family RNA polymerase sigma factor insig. 27 78
  Bacteroides ovatus ATCC 8483 BACOVA_00098 RNA polymerase sigma-70 factor insig. 26 80
  Bacteroides thetaiotaomicron VPI-5482 BT2044 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 22 80
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 26 88
  Bacteroides ovatus ATCC 8483 BACOVA_05165 Sigma-70 region 2 insig. 24 78
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 33 78
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 32 80
  Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 30 87
  Kangiella aquimarina DSM 16071 B158DRAFT_0139 RNA polymerase sigma factor, sigma-70 family insig. 28 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16905 sigma-70 family RNA polymerase sigma factor insig. 26 95
  Bacteroides ovatus ATCC 8483 BACOVA_01909 Sigma-70 region 2 sig. 26 77
  Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 34 80
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 28 83
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 28 83
  Shewanella loihica PV-4 Shew_2956 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 28 91
  Bacteroides thetaiotaomicron VPI-5482 BT3396 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 26 77
  Bacteroides thetaiotaomicron VPI-5482 BT1103 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 68
  Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor cofit 30 88
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 30 88
  Phocaeicola dorei CL03T12C01 ABI39_RS12815 sigma-70 family RNA polymerase sigma factor insig. 26 95
  Bacteroides stercoris CC31F HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor insig. 25 80
  Bacteroides ovatus ATCC 8483 BACOVA_00923 RNA polymerase sigma-70 factor insig. 23 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4300 RNA polymerase sigma factor, sigma-70 family insig. 26 79
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 26 77
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04435 RNA polymerase sigma factor insig. 25 77
  Pseudomonas sp. RS175 PFR28_04750 RNA polymerase sigma-H factor insig. 32 69
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 30 83
  Pseudomonas fluorescens FW300-N2C3 AO356_10740 RNA polymerase subunit sigma insig. 30 91