Homologs of BBR_RS16755 from Bifidobacterium breve UCC2003

site-specific tyrosine recombinase XerD
SEED: Tyrosine recombinase XerD
KEGG: integrase/recombinase XerD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Bifidobacterium breve UCC2003 BBR_RS16755 site-specific tyrosine recombinase XerD strong 100 100
o Mycobacterium tuberculosis H37Rv Rv1701 Probable integrase/recombinase sig. 50 97
o Kangiella aquimarina DSM 16071 B158DRAFT_2265 tyrosine recombinase XerD strong 41 96
o Shewanella loihica PV-4 Shew_0770 tyrosine recombinase XerD (RefSeq) strong 43 97
o Shewanella oneidensis MR-1 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) strong 42 95
o Alteromonas macleodii MIT1002 MIT1002_00786 Tyrosine recombinase XerD insig. 39 95
o Pseudomonas putida KT2440 PP_1468 Tyrosine recombinase XerD strong 41 97
o Klebsiella michiganensis M5al BWI76_RS23815 site-specific tyrosine recombinase XerD no data 42 96
o Pantoea sp. MT58 IAI47_03820 site-specific tyrosine recombinase XerD strong 42 97
o Shewanella sp. ANA-3 Shewana3_3331 tyrosine recombinase XerD (RefSeq) strong 41 95
o Pseudomonas sp. S08-1 OH686_17750 tyrosine recombinase XerD insig. 41 97
o Shewanella amazonensis SB2B Sama_2739 integrase/recombinase XerD (RefSeq) strong 41 97
o Desulfovibrio vulgaris Hildenborough JW710 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) sig. 41 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2991 Tyrosine recombinase XerD cofit 43 96
o Escherichia coli ECOR38 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD cofit 41 96
o Pseudomonas syringae pv. syringae B728a Psyr_0185 tyrosine recombinase XerC subunit sig. 38 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0185 tyrosine recombinase XerC subunit sig. 38 96
o Escherichia coli ECRC102 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD no data 41 96
o Enterobacter asburiae PDN3 EX28DRAFT_2945 tyrosine recombinase XerD insig. 42 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1721 Tyrosine recombinase XerD strong 39 97
o Escherichia coli BL21 ECD_02726 site-specific tyrosine recombinase strong 41 96
o Escherichia fergusonii Becca EFB2_01007 Tyrosine recombinase XerD strong 41 96
o Escherichia coli ECOR27 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD no data 41 96
o Escherichia coli ECRC101 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD no data 41 96
o Escherichia coli ECRC101 MCAODC_10090 xerD site-specific tyrosine recombinase XerD no data 41 96
o Escherichia coli ECRC62 BNILDI_10025 xerD site-specific tyrosine recombinase XerD insig. 41 96
o Escherichia coli ECRC98 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD no data 41 96
o Escherichia coli ECRC99 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD no data 41 96
o Escherichia coli Nissle 1917 ECOLIN_RS16125 site-specific tyrosine recombinase XerD cofit 41 96
o Escherichia coli BW25113 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) strong 41 96
o Vibrio cholerae E7946 ATCC 55056 CSW01_12250 site-specific tyrosine recombinase XerD strong 40 97
o Herbaspirillum seropedicae SmR1 HSERO_RS04265 tyrosine recombinase XerD insig. 40 96
  Pseudomonas putida KT2440 PP_5230 Tyrosine recombinase XerC strong 39 97
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00850 site-specific tyrosine recombinase XerD no data 37 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00821 Tyrosine recombinase XerD sig. 41 96
o Marinobacter adhaerens HP15 HP15_762 site-specific tyrosine recombinase XerD insig. 39 96
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD sig. 37 97
o Enterobacter sp. TBS_079 MPMX20_03753 Tyrosine recombinase XerD strong 42 97
o Serratia liquefaciens MT49 IAI46_20730 site-specific tyrosine recombinase XerD insig. 41 97
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS10220 site-specific tyrosine recombinase XerD insig. 36 97
o Dickeya dadantii 3937 DDA3937_RS03300 site-specific tyrosine recombinase XerD insig. 41 97
o Pseudomonas stutzeri RCH2 Psest_3129 tyrosine recombinase XerD insig. 39 96
  Pseudomonas stutzeri RCH2 Psest_3767 tyrosine recombinase XerC strong 39 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3011 Tyrosine recombinase XerD insig. 39 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS02755 site-specific tyrosine recombinase XerD no data 40 96
o Ralstonia solanacearum GMI1000 RS_RS12755 tyrosine recombinase XerD no data 41 96
o Pseudomonas fluorescens FW300-N2E3 AO353_04365 recombinase XerD strong 40 97
o Acidovorax sp. GW101-3H11 Ac3H11_302 Tyrosine recombinase XerD no data 41 96
  Marinobacter adhaerens HP15 HP15_250 site-specific tyrosine recombinase XerC strong 37 96
o Ralstonia solanacearum PSI07 RPSI07_RS12160 site-specific tyrosine recombinase XerD insig. 41 96
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1809 tyrosine recombinase XerD insig. 39 96
o Dickeya dianthicola 67-19 HGI48_RS03440 site-specific tyrosine recombinase XerD insig. 40 97
o Dickeya dianthicola ME23 DZA65_RS03485 site-specific tyrosine recombinase XerD no data 40 97
o Pectobacterium carotovorum WPP14 HER17_RS17890 site-specific tyrosine recombinase XerD strong 40 97
o Pseudomonas fluorescens FW300-N2C3 AO356_12725 recombinase XerC strong 39 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4416 Tyrosine recombinase XerC strong 39 96
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09520 site-specific tyrosine recombinase XerD sig. 36 96
o Rahnella sp. WP5 EX31_RS13480 site-specific tyrosine recombinase XerD strong 40 97
  Alteromonas macleodii MIT1002 MIT1002_00157 Tyrosine recombinase XerC insig. 36 96
o Dechlorosoma suillum PS Dsui_1217 tyrosine recombinase XerD cofit 41 96
o Pseudomonas sp. RS175 PFR28_00331 Tyrosine recombinase XerD strong 39 97
  Pseudomonas fluorescens GW456-L13 PfGW456L13_842 Tyrosine recombinase XerC sig. 39 96
o Pseudomonas fluorescens SBW25 PFLU_RS24560 site-specific tyrosine recombinase XerD sig. 39 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS24560 site-specific tyrosine recombinase XerD strong 39 97
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS05140 site-specific tyrosine recombinase XerD insig. 41 96
o Ralstonia solanacearum UW163 UW163_RS08485 site-specific tyrosine recombinase XerD insig. 41 96
  Dickeya dadantii 3937 DDA3937_RS19890 tyrosine recombinase XerC no data 40 97
o Erwinia tracheiphila SCR3 LU632_RS05975 xerD site-specific tyrosine recombinase XerD no data 39 97
  Pseudomonas syringae pv. syringae B728a Psyr_1286 tyrosine recombinase XerD subunit sig. 39 97
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1286 tyrosine recombinase XerD subunit sig. 39 97
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3145 Tyrosine recombinase XerD no data 39 97
  Kangiella aquimarina DSM 16071 B158DRAFT_0244 tyrosine recombinase XerC subunit strong 34 97
  Pseudomonas fluorescens FW300-N2E3 AO353_09050 recombinase XerC sig. 39 96
  Pseudomonas sp. S08-1 OH686_13785 tyrosine recombinase XerC insig. 38 96
  Pseudomonas sp. RS175 PFR28_04378 Tyrosine recombinase XerC strong 38 96
o Paraburkholderia graminis OAS925 ABIE53_003361 integrase/recombinase XerD strong 40 96
  Pseudomonas fluorescens FW300-N2C3 AO356_06385 recombinase XerD strong 39 97
o Pseudomonas simiae WCS417 PS417_22895 tyrosine recombinase XerD strong 38 97
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2171 Tyrosine recombinase XerC insig. 38 96
o Bacteroides ovatus ATCC 8483 BACOVA_02123 tyrosine recombinase XerD insig. 37 94
o Castellaniella sp019104865 MT123 ABCV34_RS00515 site-specific tyrosine recombinase XerD insig. 40 98
  Erwinia tracheiphila SCR3 LU632_RS24135 xerC tyrosine recombinase XerC no data 39 96
  Escherichia coli ECRC101 OKFHMN_14420 xerC tyrosine recombinase XerC no data 37 97
  Escherichia coli ECRC101 MCAODC_04925 xerC tyrosine recombinase XerC no data 37 97
  Escherichia coli ECRC102 NIAGMN_12175 xerC tyrosine recombinase XerC no data 37 97
  Escherichia coli ECRC98 JDDGAC_18045 xerC tyrosine recombinase XerC no data 37 97
  Escherichia coli ECRC99 KEDOAH_13730 xerC tyrosine recombinase XerC no data 37 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.847.1 Site-specific tyrosine recombinase no data 37 100
  Escherichia fergusonii Becca EFB2_04826 Tyrosine recombinase XerC strong 39 97
o Phocaeicola dorei CL03T12C01 ABI39_RS07000 site-specific tyrosine recombinase XerD sig. 36 94
o Burkholderia phytofirmans PsJN BPHYT_RS15950 tyrosine recombinase XerD sig. 38 96
  Escherichia coli BL21 ECD_03687 site-specific tyrosine recombinase sig. 38 97
  Escherichia coli ECOR27 NOLOHH_06550 xerC tyrosine recombinase XerC no data 38 97
  Escherichia coli ECOR38 HEPCGN_13125 xerC tyrosine recombinase XerC insig. 38 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04239 Tyrosine recombinase XerC insig. 38 97
  Escherichia coli Nissle 1917 ECOLIN_RS21875 tyrosine recombinase XerC cofit 38 97
  Escherichia coli BW25113 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) strong 38 97
o Variovorax sp. SCN45 GFF2772 Site-specific tyrosine recombinase XerD strong 40 96
  Dickeya dianthicola 67-19 HGI48_RS20045 tyrosine recombinase XerC strong 39 97
  Escherichia coli ECRC62 BNILDI_04985 xerC tyrosine recombinase XerC no data 38 97