Homologs of AMB_RS08060 from Magnetospirillum magneticum AMB-1

RNA polymerase sigma factor

89 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Magnetospirillum magneticum AMB-1	AMB_RS08060		RNA polymerase sigma factor	cofit	100	100
o	Rhodopseudomonas palustris CGA009	TX73_021225		sigma-70 family RNA polymerase sigma factor	insig.	51	90
o	Rhodospirillum rubrum S1H	Rru_A1809		Sigma-24 (FecI) (NCBI)	strong	45	98
o	Herbaspirillum seropedicae SmR1	HSERO_RS15420		RNA polymerase subunit sigma-24	insig.	30	95
o	Paraburkholderia graminis OAS925	ABIE53_002123		RNA polymerase sigma factor (sigma-70 family)	sig.	34	89
o	Burkholderia phytofirmans PsJN	BPHYT_RS21530		RNA polymerase subunit sigma-24	insig.	31	93
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_00202		RNA polymerase sigma factor, sigma-70 family	insig.	31	94
o	Paraburkholderia sabiae LMG 24235	QEN71_RS14060		sigma-70 family RNA polymerase sigma factor	insig.	30	94
	Dechlorosoma suillum PS	Dsui_2099		RNA polymerase sigma factor, sigma-70 family	no data	33	89
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS21740		RNA polymerase sigma factor	sig.	30	83
o	Klebsiella michiganensis M5al	BWI76_RS14070		ECF subfamily RNA polymerase sigma-24 subunit	no data	34	89
	Sinorhizobium meliloti 1021	SMc01419		RNA polymerase sigma factor protein	sig.	37	75
	Ralstonia solanacearum PSI07	RPSI07_RS10230		RNA polymerase sigma factor	no data	40	65
	Azospirillum brasilense Sp245	AZOBR_RS06360		RNA polymerase subunit sigma-24	no data	35	73
	Rhizobium sp. OAE497	ABIE40_RS11455		RNA polymerase sigma factor	insig.	35	71
	Ralstonia solanacearum GMI1000	RS_RS14950		RNA polymerase sigma factor	no data	39	65
	Ralstonia sp. UNC404CL21Col	ABZR87_RS02660		RNA polymerase sigma factor	insig.	41	61
	Cupriavidus basilensis FW507-4G11	RR42_RS19070		DNA-directed RNA polymerase sigma-70 factor	insig.	38	62
	Agrobacterium fabrum C58	Atu2030		ECF family sigma factor	insig.	36	75
	Enterobacter asburiae PDN3	EX28DRAFT_1130		RNA polymerase sigma factor, sigma-70 family	insig.	31	96
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS07010		RNA polymerase sigma factor	no data	40	65
	Ralstonia solanacearum UW163	UW163_RS06605		RNA polymerase sigma factor	no data	40	65
	Azospirillum sp. SherDot2	MPMX19_00764		ECF RNA polymerase sigma factor EcfG	insig.	32	78
	Enterobacter sp. TBS_079	MPMX20_02342		hypothetical protein	insig.	31	94
	Bacteroides ovatus ATCC 8483	BACOVA_01066		hypothetical protein	insig.	27	93
	Rhizobium sp. OAE497	ABIE40_RS20320		sigma-70 family RNA polymerase sigma factor	insig.	33	75
	Marinobacter adhaerens HP15	HP15_342		RNA polymerase sigma factor SigE	insig.	29	78
	Azospirillum brasilense Sp245	AZOBR_RS10625		RNA polymerase sigma-70 factor	insig.	34	72
	Azospirillum brasilense Sp245	AZOBR_RS11020		RNA polymerase subunit sigma-70	no data	34	70
	Rhizobium sp. OAE497	ABIE40_RS27415		sigma-70 family RNA polymerase sigma factor	insig.	29	77
	Sphingobium sp. HT1-2	GFF2028		hypothetical protein	cofit	31	86
	Burkholderia phytofirmans PsJN	BPHYT_RS08240		RNA polymerase subunit sigma-24	sig.	33	74
	Sinorhizobium meliloti 1021	SMc01506		RNA polymerase sigma factor	strong	26	72
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF329		RNA polymerase sigma-54 factor RpoN	insig.	30	73
	Variovorax sp. SCN45	GFF215		RNA polymerase sigma-54 factor RpoN	insig.	30	73
	Rhodopseudomonas palustris CGA009	TX73_021900		sigma-70 family RNA polymerase sigma factor	strong	28	69
	Pseudomonas sp. DMC3	GFF1465		ECF RNA polymerase sigma factor EcfG	insig.	37	57
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_05124		RNA polymerase sigma-70 factor, ECF subfamily	insig.	33	72
	Synechococcus elongatus PCC 7942	Synpcc7942_2004	sigI	RNA polymerase sigma factor	insig.	28	89
	Bacteroides thetaiotaomicron VPI-5482	BT2198		RNA polymerase ECF-type sigma factor (NCBI ptt file)	insig.	26	74
	Fusobacterium nucleatum SB010	HUW76_07635		RNA polymerase sigma factor	no data	21	84
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_4295		Predicted RNA polymerase sigma factor containing a TPR repeat domain	insig.	30	70
	Azospirillum sp. SherDot2	MPMX19_01371		hypothetical protein	insig.	35	74
	Pseudomonas syringae pv. syringae B728a	Psyr_4731		Sigma-70 region 2:Sigma-70 region 4	insig.	29	95
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_4731		Sigma-70 region 2:Sigma-70 region 4	insig.	29	95
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS15765		RNA polymerase sigma factor	strong	25	74
	Paraburkholderia sabiae LMG 24235	QEN71_RS23005		sigma-70 family RNA polymerase sigma factor	insig.	31	74
	Paraburkholderia graminis OAS925	ABIE53_003919		RNA polymerase sigma-70 factor (ECF subfamily)	insig.	30	70
	Rhizobium sp. OAE497	ABIE40_RS14450		RNA polymerase sigma factor	insig.	26	72
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_19215		RNA polymerase subunit sigma	sig.	24	80
	Pseudomonas lactucae CFBP13502	GEMAOFIL_03722		ECF RNA polymerase sigma factor EcfG	no data	36	57
	Cupriavidus basilensis FW507-4G11	RR42_RS32410		RNA polymerase subunit sigma-24	no data	34	57
	Agrobacterium fabrum C58	Atu4160		RNA polymerase sigma factor	strong	27	71
	Pseudomonas syringae pv. syringae B728a	Psyr_1217		Sigma-70 region 2:Sigma-70 region 4	strong	27	94
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_1217		Sigma-70 region 2:Sigma-70 region 4	cofit	27	94
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_3977		RNA polymerase sigma-54 factor RpoN	insig.	36	57
	Pseudomonas simiae WCS417	PS417_17070		RNA polymerase subunit sigma-24	insig.	36	67
	Pseudomonas sp. RS175	PFR28_01251		ECF RNA polymerase sigma factor EcfG	insig.	35	67
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2200		RNA polymerase sigma-54 factor RpoN	sig.	34	57
	Pseudomonas fluorescens SBW25	PFLU_RS19010		sigma-70 family RNA polymerase sigma factor	insig.	33	57
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS19010		sigma-70 family RNA polymerase sigma factor	sig.	33	57
	Variovorax sp. OAS795	ABID97_RS16445		sigma-70 family RNA polymerase sigma factor	no data	33	69
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS12920		RNA polymerase sigma-70 factor	cofit	24	86
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_01465		RNA polymerase sigma-70 factor, ECF subfamily	insig.	30	72
	Pseudomonas orientalis W4I3	QF045_RS18740		sigma-70 family RNA polymerase sigma factor	insig.	34	67
	Paraburkholderia graminis OAS925	ABIE53_002425		RNA polymerase sigma-70 factor (ECF subfamily)	insig.	31	75
	Mycobacterium tuberculosis H37Rv	Rv3223c		Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE)	insig.	28	92
	Pseudomonas fluorescens FW300-N2E3	AO353_20305		RNA polymerase subunit sigma-24	no data	35	57
	Pseudomonas fluorescens FW300-N2C3	AO356_01625		RNA polymerase subunit sigma-24	insig.	34	57
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_06547		RNA polymerase sigma-70 factor, ECF subfamily	insig.	30	71
	Phaeobacter inhibens DSM 17395	PGA1_c27070		RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup)	insig.	26	69
	Pseudomonas putida KT2440	PP_2888		putative ECF sigma factor PrtI	no data	27	74
	Azospirillum sp. SherDot2	MPMX19_00923		hypothetical protein	insig.	29	73
	Burkholderia phytofirmans PsJN	BPHYT_RS24740		RNA polymerase subunit sigma-24	sig.	31	74
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_05041		RNA polymerase sigma-70 factor, ECF subfamily	insig.	30	68
	Synechococcus elongatus PCC 7942	Synpcc7942_1923	sigG	RNA polymerase sigma factor RpoE	strong	28	73
	Pseudomonas sp. BP01	JOY50_RS05860		sigma-70 family RNA polymerase sigma factor	no data	30	74
	Sphingomonas koreensis DSMZ 15582	Ga0059261_3411		RNA polymerase sigma factor, sigma-70 family	insig.	29	77
	Pseudomonas putida KT2440	PP_3006		RNA polymerase sigma-70 factor, ECF subfamily	insig.	28	92
	Dinoroseobacter shibae DFL-12	Dshi_3835		RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq)	insig.	26	72
	Pseudomonas fluorescens GW456-L13	PfGW456L13_2582		RNA polymerase sigma-54 factor RpoN	insig.	35	57
	Azospirillum sp. SherDot2	MPMX19_01197		ECF RNA polymerase sigma factor EcfG	insig.	30	69
	Sphingobium sp. HT1-2	GFF4551		hypothetical protein	cofit	27	74
	Serratia liquefaciens MT49	IAI46_11745		sigma-70 family RNA polymerase sigma factor	no data	25	90
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF4350		RNA polymerase sigma-54 factor RpoN	insig.	34	69
	Phocaeicola dorei CL03T12C01	ABI39_RS17450		RNA polymerase sigma factor	strong	26	74
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS03770		RNA polymerase sigma factor	strong	26	74
	Azospirillum brasilense Sp245	AZOBR_RS14755		RNA polymerase sigma-70 factor	insig.	30	69
	Phaeobacter inhibens DSM 17395	PGA1_c27510		'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)'	insig.	25	84