Homologs of Sama_3264 from Shewanella amazonensis SB2B

putative diguanylate phosphodiesterase (RefSeq)
SEED: Membrane bound c-di-GMP receptor LapD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella amazonensis SB2B Sama_3264 putative diguanylate phosphodiesterase (RefSeq) sig. 100 100
o Shewanella loihica PV-4 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 77 100
o Shewanella sp. ANA-3 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) sig. 75 100
o Shewanella oneidensis MR-1 SO4323 GGDEF domain protein (NCBI ptt file) cofit 75 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_19490 GGDEF domain-containing protein cofit 30 99
o Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 26 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 27 97
o Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 25 99
o Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 25 99
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 25 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 26 99
o Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 25 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 25 97
o Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 25 97
o Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 25 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 25 100
o Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 25 97
o Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 26 99
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 25 99
o Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 27 91
o Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 26 96
o Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 25 99
o Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 26 99
o Pseudomonas aeruginosa PA14 IKLFDK_06810 Diguanylate cyclase/phosphodiesterase insig. 25 92
o Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 23 97
o Methylophilus sp. DMC18 GFF459 hypothetical protein insig. 21 99
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 21 99
  Pseudomonas sp. BP01 JOY50_RS25465 bifunctional diguanylate cyclase/phosphodiesterase insig. 28 62
  Rahnella sp. WP5 EX31_RS07415 bifunctional diguanylate cyclase/phosphodiesterase insig. 25 62
  Pseudomonas putida KT2440 PP_2258 Sensory box protein insig. 27 63
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 63
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 24 61
  Paraburkholderia graminis OAS925 ABIE53_001117 diguanylate cyclase (GGDEF)-like protein insig. 24 69
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 76
  Paraburkholderia sabiae LMG 24235 QEN71_RS12220 GGDEF and EAL domain-containing protein insig. 23 66
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 23 78
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 22 72
  Alteromonas macleodii MIT1002 MIT1002_00062 Bacteriophytochrome cph2 insig. 24 76
  Magnetospirillum magneticum AMB-1 AMB_RS23225 GGDEF domain-containing protein insig. 24 79
  Ralstonia solanacearum PSI07 RPSI07_RS05100 bifunctional diguanylate cyclase/phosphodiesterase insig. 26 62
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 24 61
  Dechlorosoma suillum PS Dsui_2419 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 26 62
  Pseudomonas aeruginosa PA14 IKLFDK_22535 bifunctional diguanylate cyclase/phosphodiesterase cofit 24 62
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 68
  Shewanella loihica PV-4 Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) insig. 24 69
  Rhodopseudomonas palustris CGA009 TX73_015335 EAL domain-containing protein insig. 26 64
  Pseudomonas syringae pv. syringae B728a Psyr_4493 PAS:GGDEF insig. 26 62
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4493 PAS:GGDEF cofit 26 62
  Pseudomonas fluorescens FW300-N2E3 AO353_20610 histidine kinase insig. 26 62
  Rhodospirillum rubrum S1H Rru_A2604 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI) insig. 23 68
  Shewanella loihica PV-4 Shew_3416 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 22 62
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS03860 EAL domain-containing protein insig. 25 75
  Pseudomonas sp. S08-1 OH686_07355 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 62
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 24 62
  Pseudomonas syringae pv. syringae B728a Psyr_2432 diguanylate cyclase/phosphodiesterase insig. 22 68
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2432 diguanylate cyclase/phosphodiesterase insig. 22 68
  Paraburkholderia sabiae LMG 24235 QEN71_RS13125 EAL domain-containing protein insig. 23 72
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 27 53
  Cupriavidus basilensis FW507-4G11 RR42_RS01495 diguanylate cyclase insig. 23 59
  Paraburkholderia sabiae LMG 24235 QEN71_RS20660 EAL domain-containing protein insig. 24 66
  Desulfovibrio vulgaris Hildenborough JW710 DVU2432 sensory box/GGDEF domain/EAL domain protein (TIGR) insig. 24 66
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 23 74
  Ralstonia solanacearum GMI1000 RS_RS22415 bifunctional diguanylate cyclase/phosphodiesterase insig. 25 62
  Herbaspirillum seropedicae SmR1 HSERO_RS13620 diguanylate cyclase strong 25 61
  Acidovorax sp. GW101-3H11 Ac3H11_1725 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) cofit 23 64
  Shewanella sp. ANA-3 Shewana3_2929 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 24 63
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1185 sensory box/GGDEF domain/EAL domain protein insig. 25 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_725 Sensory box/GGDEF family protein insig. 26 65
  Alteromonas macleodii MIT1002 MIT1002_01199 Bacteriophytochrome cph2 insig. 23 62
  Shewanella sp. ANA-3 Shewana3_0133 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 26 62
  Rhodanobacter denitrificans MT42 LRK55_RS10715 EAL domain-containing protein insig. 25 75
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11010 EAL domain-containing protein insig. 25 75
  Synechocystis sp000284455 PCC 6803 SGL_RS11860 EAL domain-containing protein insig. 24 61
  Shewanella sp. ANA-3 Shewana3_0620 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 61
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4157 diguanylate cyclase (GGDEF) domain insig. 23 57
  Pseudomonas aeruginosa PA14 IKLFDK_03805 PAS domain S-box protein insig. 25 63
  Pseudomonas simiae WCS417 PS417_18610 histidine kinase sig. 25 62
  Acidovorax sp. GW101-3H11 Ac3H11_5002 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 70
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 26 61
  Desulfovibrio vulgaris Miyazaki F DvMF_2963 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) insig. 24 62
  Shewanella amazonensis SB2B Sama_2405 sensory box protein (RefSeq) insig. 25 62
  Shewanella amazonensis SB2B Sama_2164 sensory box protein (RefSeq) strong 25 63
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3423 PAS domain S-box/diguanylate cyclase (GGDEF) domain insig. 24 66
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01564 diguanylate cyclase/phosphodiesterase insig. 23 68
  Pseudomonas fluorescens SBW25 PFLU_RS20590 EAL domain-containing protein insig. 25 62
  Pseudomonas fluorescens SBW25-INTG PFLU_RS20590 EAL domain-containing protein insig. 25 62
  Pseudomonas fluorescens FW300-N2E3 AO353_27105 diguanylate cyclase insig. 24 63
  Dechlorosoma suillum PS Dsui_0894 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 24 64
  Pseudomonas fluorescens FW300-N2C3 AO356_11995 diguanylate cyclase insig. 25 65
  Pseudomonas sp. S08-1 OH686_04490 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 64
  Pseudomonas fluorescens SBW25 PFLU_RS29895 EAL domain-containing protein insig. 24 64
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29895 EAL domain-containing protein insig. 24 64
  Marinobacter adhaerens HP15 HP15_68 sensory box/FOG: EAL domain/GGDEF domain containing protein insig. 23 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2007 Sensory box/GGDEF family protein insig. 26 63
  Shewanella oneidensis MR-1 SO3084 sensory box protein (NCBI ptt file) sig. 24 69
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3950 Sensory box/GGDEF family protein insig. 25 62
  Pseudomonas stutzeri RCH2 Psest_1163 diguanylate cyclase (GGDEF) domain strong 23 76
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_39 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 23 65
  Pseudomonas sp. SVBP6 COO64_RS01840 EAL domain-containing protein insig. 26 65
  Xanthobacter sp. DMC5 GFF4278 hypothetical protein insig. 25 62