Homologs of BT1817 from Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Bacteroides thetaiotaomicron VPI-5482	BT1817		RNA polymerase ECF-type sigma factor (NCBI ptt file)	sig.	100	100
o	Parabacteroides merdae CL09T00C40	HMPREF1078_RS04360		sigma-70 family RNA polymerase sigma factor	insig.	49	99
o	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS16905		sigma-70 family RNA polymerase sigma factor	insig.	51	98
o	Phocaeicola dorei CL03T12C01	ABI39_RS12815		sigma-70 family RNA polymerase sigma factor	insig.	51	98
o	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS21575		RNA polymerase subunit sigma	insig.	37	96
o	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS22010		RNA polymerase sigma factor	insig.	38	91
o	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_19605		RNA polymerase	insig.	34	93
o	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_2047		RNA polymerase sigma factor, sigma-70 family	strong	32	86
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS15190		RNA polymerase sigma factor	insig.	32	90
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS13970		RNA polymerase sigma factor	insig.	32	93
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_00665		RNA polymerase subunit sigma-24	strong	33	85
	Bacteroides thetaiotaomicron VPI-5482	BT4647		RNA polymerase ECF-type sigma factor (NCBI ptt file)	insig.	31	85
	Kangiella aquimarina DSM 16071	B158DRAFT_2027		RNA polymerase sigma factor, sigma-70 family	insig.	30	95
	Azospirillum sp. SherDot2	MPMX19_05214		ECF RNA polymerase sigma factor SigE	insig.	28	98
	Ralstonia sp. UNC404CL21Col	ABZR87_RS10165		RNA polymerase sigma factor RpoE	strong	31	96
o	Castellaniella sp019104865 MT123	ABCV34_RS11175		sigma-70 family RNA polymerase sigma factor	insig.	30	88
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_4578		RNA polymerase sigma factor, sigma-70 family	insig.	28	95
	Phocaeicola dorei CL03T12C01	ABI39_RS11710		RNA polymerase sigma factor	insig.	29	88
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS19950		RNA polymerase subunit sigma-24	insig.	31	85
	Bacteroides ovatus ATCC 8483	BACOVA_05461		Sigma-70 region 2	insig.	30	85
o	Azospirillum brasilense Sp245	AZOBR_RS31600		RNA polymerase	insig.	34	99
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS15730		RNA polymerase sigma factor	sig.	29	88
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS14445		RNA polymerase sigma factor RpoE	strong	30	96
	Ralstonia solanacearum GMI1000	RS_RS05225		RNA polymerase sigma factor RpoE	strong	30	96
	Ralstonia solanacearum PSI07	RPSI07_RS19015		RNA polymerase sigma factor RpoE	strong	30	96
	Ralstonia solanacearum UW163	UW163_RS11910		RNA polymerase sigma factor RpoE	insig.	30	96
	Bacteroides stercoris CC31F	HMPREF1181_RS04660		sigma-70 family RNA polymerase sigma factor	insig.	33	87
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_11965		RNA polymerase subunit sigma	insig.	28	85
	Paraburkholderia sabiae LMG 24235	QEN71_RS04575		RNA polymerase sigma factor RpoE	strong	30	97
	Rhodanobacter denitrificans MT42	LRK55_RS11045		sigma-70 family RNA polymerase sigma factor	insig.	28	91
	Burkholderia phytofirmans PsJN	BPHYT_RS14405		RNA polymerase sigma factor RpoE	no data	30	97
	Paraburkholderia graminis OAS925	ABIE53_003043		RNA polymerase sigma-70 factor (ECF subfamily)	strong	30	97
	Cupriavidus basilensis FW507-4G11	RR42_RS14080		RNA polymerase sigma factor RpoE	strong	30	96
	Rhodopseudomonas palustris CGA009	TX73_003315		RNA polymerase sigma factor	insig.	28	94
	Alteromonas macleodii MIT1002	MIT1002_00882		Sigma-W factor	insig.	27	96
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_04355		RNA polymerase, sigma-24 subunit, RpoE	no data	30	97
	Sphingomonas koreensis DSMZ 15582	Ga0059261_2952		RNA polymerase sigma factor, sigma-70 family	strong	30	89
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS11315		sigma-70 family RNA polymerase sigma factor	insig.	27	91
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS10600		RNA polymerase subunit sigma-24	strong	28	98
	Kangiella aquimarina DSM 16071	B158DRAFT_1843		RNA polymerase sigma factor, sigma-70 family	insig.	28	93
	Azospirillum brasilense Sp245	AZOBR_RS28490		hypothetical protein	sig.	26	93
	Rhodanobacter sp. FW510-T8	OKGIIK_12575	rpoE	RNA polymerase subunit sigma-24	insig.	31	79
	Phocaeicola dorei CL03T12C01	ABI39_RS12855		RNA polymerase sigma factor	insig.	31	87
	Rhodopseudomonas palustris CGA009	TX73_024905		sigma-70 family RNA polymerase sigma factor	insig.	29	92
	Azospirillum sp. SherDot2	MPMX19_05475		hypothetical protein	no data	28	83
	Variovorax sp. SCN45	GFF3863		RNA polymerase sigma factor RpoE	insig.	29	95
	Bacteroides ovatus ATCC 8483	BACOVA_00397		Sigma-70 region 2	sig.	33	87
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS16945		RNA polymerase sigma factor	sig.	31	87
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS07715		RNA polymerase sigma factor	no data	29	88
	Pseudomonas sp. S08-1	OH686_20045		RNA polymerase sigma factor RpoE	strong	26	96
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.1840.1		FIG01210863: hypothetical protein	insig.	36	73
	Pseudomonas stutzeri RCH2	Psest_3456		RNA polymerase sigma factor, sigma-70 family	insig.	25	93
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF3339		RNA polymerase sigma factor RpoE	cofit	29	92
	Variovorax sp. OAS795	ABID97_RS08330		RNA polymerase sigma factor RpoE	strong	29	95
	Rhodopseudomonas palustris CGA009	TX73_009355		sigma-70 family RNA polymerase sigma factor	insig.	28	94
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS00075		RNA polymerase sigma factor	insig.	25	85
o	Pseudomonas fluorescens FW300-N2C3	AO356_04270		RNA polymerase subunit sigma-24	insig.	29	96
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2692		RNA polymerase sigma factor RpoE	sig.	27	96
	Bacteroides thetaiotaomicron VPI-5482	BT0248		RNA polymerase ECF-type sigma factor (NCBI ptt file)	sig.	33	85
	Azospirillum sp. SherDot2	MPMX19_04274		RNA polymerase sigma-H factor	insig.	32	81
	Bacteroides thetaiotaomicron VPI-5482	BT4347		RNA polymerase ECF-type sigma factor (NCBI ptt file)	insig.	30	85
	Vibrio cholerae E7946 ATCC 55056	CSW01_12485		RNA polymerase sigma factor RpoE	no data	29	96
	Pseudomonas syringae pv. syringae B728a	Psyr_3958		RNA polymerase, sigma-24 subunit, RpoE	strong	27	96
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_3958		RNA polymerase, sigma-24 subunit, RpoE	strong	27	96
	Magnetospirillum magneticum AMB-1	AMB_RS14160		RNA polymerase sigma factor	cofit	26	96
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS07350		sigma-70 family RNA polymerase sigma factor	insig.	29	85
	Pseudomonas sp. RS175	PFR28_00741		ECF RNA polymerase sigma-E factor	insig.	28	96
	Pseudomonas fluorescens SBW25	PFLU_RS07230		RNA polymerase sigma factor RpoE	sig.	27	96
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS07230		RNA polymerase sigma factor RpoE	strong	27	96
	Pseudomonas sp. RS175	PFR28_00690		RNA polymerase sigma-H factor	strong	27	96
	Pseudomonas simiae WCS417	PS417_07120		RNA polymerase sigma-H factor	strong	27	96
	Pseudomonas fluorescens GW456-L13	PfGW456L13_4516		RNA polymerase sigma-H factor AlgT	sig.	27	96
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_3323		RNA polymerase sigma-H factor AlgT	no data	27	96
	Pseudomonas fluorescens FW300-N2E3	AO353_17625		RNA polymerase subunit sigma	strong	27	96
	Pseudomonas fluorescens FW300-N2C3	AO356_04575		RNA polymerase subunit sigma	strong	27	96
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2756		RNA polymerase sigma-H factor AlgT	strong	27	96
	Bosea sp. OAE506	ABIE41_RS07610		sigma-70 family RNA polymerase sigma factor	insig.	25	99
	Bacteroides ovatus ATCC 8483	BACOVA_05165		Sigma-70 region 2	insig.	29	85
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS19220		sigma-70 family RNA polymerase sigma factor	insig.	30	96
	Shewanella amazonensis SB2B	Sama_2611		ECF subfamily RNA polymerase sigma-24 factor (RefSeq)	insig.	29	86
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS01700		RNA polymerase sigma factor	insig.	28	86
	Bacteroides stercoris CC31F	HMPREF1181_RS11830		sigma-70 family RNA polymerase sigma factor	insig.	28	85
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_14945		RNA polymerase subunit sigma-24	strong	29	91
	Pseudomonas putida KT2440	PP_1427		RNA polymerase sigma E factor	sig.	27	96
	Bacteroides thetaiotaomicron VPI-5482	BT2492		RNA polymerase ECF-type sigma factor (NCBI ptt file)	sig.	29	88
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS13165		RNA polymerase sigma factor	insig.	27	85
	Rhodospirillum rubrum S1H	Rru_A2537		Sigma-24 (FecI) (NCBI)	insig.	33	75
	Herbaspirillum seropedicae SmR1	HSERO_RS09625		RNA polymerase sigma factor RpoE	no data	29	92
	Alteromonas macleodii MIT1002	MIT1002_02719		Sigma-24	no data	28	96
	Paraburkholderia graminis OAS925	ABIE53_005146		RNA polymerase sigma factor (sigma-70 family)	sig.	27	90
	Castellaniella sp019104865 MT123	ABCV34_RS08355		RNA polymerase sigma factor RpoE	cofit	27	92
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_01538		RNA polymerase sigma-70 factor, ECF subfamily	insig.	27	93
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_0865		RNA polymerase sigma factor, sigma-70 family	insig.	30	90
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS07180		RNA polymerase sigma factor RpoE	strong	27	93
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_02680		RNA polymerase subunit sigma-70	insig.	31	95
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_1738		RNA polymerase sigma-54 factor RpoN	insig.	27	96
	Dechlorosoma suillum PS	Dsui_2453		RNA polymerase sigma factor RpoE	no data	27	92
	Acidovorax sp. GW101-3H11	Ac3H11_1573		RNA polymerase sigma factor RpoE	no data	26	93
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS18950		sigma-70 family RNA polymerase sigma factor	insig.	30	84
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS04530		sigma-70 family RNA polymerase sigma factor	insig.	29	86