Homologs of SO3884 from Shewanella oneidensis MR-1

site-specific recombinase, phage integrase family (NCBI ptt file)
SEED: Integrase/recombinase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO3884 site-specific recombinase, phage integrase family (NCBI ptt file) insig. 100 100
o Alteromonas macleodii MIT1002 MIT1002_03221 Tyrosine recombinase XerC insig. 53 96
o Enterobacter sp. TBS_079 MPMX20_04667 Tyrosine recombinase XerC sig. 29 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4812 Site-specific recombinase, phage integrase family insig. 28 94
o Pseudomonas fluorescens GW456-L13 PfGW456L13_3231 Site-specific recombinase, phage integrase family insig. 27 91
o Pseudomonas fluorescens SBW25 PFLU_RS14840 tyrosine-type recombinase/integrase insig. 27 93
o Pseudomonas fluorescens SBW25-INTG PFLU_RS14840 tyrosine-type recombinase/integrase insig. 27 93
o Pseudomonas simiae WCS417 PS417_13780 integrase strong 27 91
o Pseudomonas putida KT2440 PP_2841 Site-specific recombinase, phage integrase family insig. 27 87
o Pseudomonas syringae pv. syringae B728a Psyr_2751 Phage integrase:Phage integrase, N-terminal SAM-like protein insig. 28 89
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2751 Phage integrase:Phage integrase, N-terminal SAM-like protein insig. 28 89
  Bacteroides thetaiotaomicron VPI-5482 BT2742 integrase, site-specific recombinase (NCBI ptt file) insig. 27 85
  Bacteroides ovatus ATCC 8483 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein insig. 26 87
  Alteromonas macleodii MIT1002 MIT1002_00157 Tyrosine recombinase XerC insig. 33 70
  Shewanella loihica PV-4 Shew_0325 tyrosine recombinase XerC (RefSeq) sig. 27 89
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS10885 tyrosine recombinase XerC sig. 29 72
  Shewanella sp. ANA-3 Shewana3_0393 tyrosine recombinase XerC (RefSeq) strong 29 77
  Dinoroseobacter shibae DFL-12 Dshi_3696 integrase family protein (RefSeq) no data 32 82
  Dinoroseobacter shibae DFL-12 Dshi_4006 integrase family protein (RefSeq) no data 32 82
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17800 tyrosine-type recombinase/integrase insig. 26 85
  Shewanella amazonensis SB2B Sama_3247 integrase/recombinase XerC (RefSeq) strong 31 71
  Azospirillum sp. SherDot2 MPMX19_00151 Tyrosine recombinase XerC insig. 28 74
  Shewanella oneidensis MR-1 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) strong 27 77
  Bifidobacterium breve UCC2003 BBR_RS16755 site-specific tyrosine recombinase XerD strong 29 70
  Castellaniella sp019104865 MT123 ABCV34_RS00515 site-specific tyrosine recombinase XerD insig. 31 71
  Pseudomonas sp. S08-1 OH686_17750 tyrosine recombinase XerD insig. 27 92
  Azospirillum sp. SherDot2 MPMX19_00143 Tyrosine recombinase XerC insig. 29 74
  Azospirillum brasilense Sp245 AZOBR_RS03240 recombinase XerD insig. 28 71
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02835 integrase strong 24 89
  Desulfovibrio vulgaris Hildenborough JW710 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) sig. 28 70
  Desulfovibrio vulgaris Miyazaki F DvMF_0359 tyrosine recombinase XerD (RefSeq) strong 26 70
  Dinoroseobacter shibae DFL-12 Dshi_3629 integrase family protein (RefSeq) no data 30 59
  Dinoroseobacter shibae DFL-12 Dshi_3661 integrase family protein (RefSeq) no data 30 59
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15025 tyrosine recombinase XerC strong 28 87
  Pectobacterium carotovorum WPP14 HER17_RS17890 site-specific tyrosine recombinase XerD strong 32 54
  Dickeya dadantii 3937 DDA3937_RS03300 site-specific tyrosine recombinase XerD insig. 28 88
  Erwinia tracheiphila SCR3 LU632_RS24135 xerC tyrosine recombinase XerC no data 27 86
  Rhizobium sp. OAE497 ABIE40_RS17950 tyrosine recombinase XerC insig. 27 76
  Vibrio cholerae E7946 ATCC 55056 CSW01_00650 tyrosine recombinase XerC strong 27 69
  Magnetospirillum magneticum AMB-1 AMB_RS19880 site-specific tyrosine recombinase XerD cofit 32 55
  Pseudomonas putida KT2440 PP_5230 Tyrosine recombinase XerC strong 27 89
  Variovorax sp. SCN45 GFF2772 Site-specific tyrosine recombinase XerD strong 36 54
  Variovorax sp. OAS795 ABID97_RS20265 site-specific tyrosine recombinase XerD insig. 35 54
  Pseudomonas fluorescens FW300-N2E3 AO353_09050 recombinase XerC sig. 29 76
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19035 integrase no data 28 72
  Pseudomonas sp. RS175 PFR28_04378 Tyrosine recombinase XerC strong 25 89
  Erwinia tracheiphila SCR3 LU632_RS05975 xerD site-specific tyrosine recombinase XerD no data 32 54
  Phocaeicola dorei CL03T12C01 ABI39_RS03835 tyrosine-type recombinase/integrase no data 25 70
  Dinoroseobacter shibae DFL-12 Dshi_1611 integrase family protein (RefSeq) strong 33 57
  Dickeya dianthicola 67-19 HGI48_RS03440 site-specific tyrosine recombinase XerD insig. 32 54
  Dickeya dianthicola ME23 DZA65_RS03485 site-specific tyrosine recombinase XerD no data 32 54
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS05140 site-specific tyrosine recombinase XerD insig. 31 71
  Ralstonia solanacearum UW163 UW163_RS08485 site-specific tyrosine recombinase XerD insig. 31 71
  Alteromonas macleodii MIT1002 MIT1002_00786 Tyrosine recombinase XerD insig. 29 70
  Agrobacterium fabrum C58 Atu2628 site-specific recombinase no data 27 86
  Rahnella sp. WP5 EX31_RS13480 site-specific tyrosine recombinase XerD strong 33 54
  Serratia liquefaciens MT49 IAI46_20730 site-specific tyrosine recombinase XerD insig. 29 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_842 Tyrosine recombinase XerC sig. 26 89
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2171 Tyrosine recombinase XerC insig. 26 89
  Ralstonia solanacearum GMI1000 RS_RS17610 recombinase XerC insig. 34 54
  Enterobacter sp. TBS_079 MPMX20_03753 Tyrosine recombinase XerD strong 32 47
  Enterobacter asburiae PDN3 EX28DRAFT_2945 tyrosine recombinase XerD insig. 32 47
  Pantoea sp. MT58 IAI47_03820 site-specific tyrosine recombinase XerD strong 32 47
  Cupriavidus basilensis FW507-4G11 RR42_RS03345 recombinase XerD sig. 32 51
  Pseudomonas fluorescens FW300-N2C3 AO356_12725 recombinase XerC strong 26 89
  Escherichia coli ECRC102 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD no data 32 47
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0827 Site-specific recombinase XerD insig. 27 73
  Vibrio cholerae E7946 ATCC 55056 CSW01_12250 site-specific tyrosine recombinase XerD strong 31 54
  Burkholderia phytofirmans PsJN BPHYT_RS01655 tyrosine recombinase XerC no data 28 90
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00850 site-specific tyrosine recombinase XerD no data 25 88
  Pseudomonas stutzeri RCH2 Psest_3767 tyrosine recombinase XerC strong 34 49
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2991 Tyrosine recombinase XerD cofit 31 54
  Ralstonia solanacearum GMI1000 RS_RS12755 tyrosine recombinase XerD no data 30 71
  Ralstonia solanacearum PSI07 RPSI07_RS12160 site-specific tyrosine recombinase XerD insig. 34 54
  Ralstonia solanacearum UW163 UW163_RS23220 recombinase XerC insig. 33 54
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00821 Tyrosine recombinase XerD sig. 31 47
  Escherichia coli BL21 ECD_02726 site-specific tyrosine recombinase strong 31 54
  Escherichia fergusonii Becca EFB2_01007 Tyrosine recombinase XerD strong 31 54
  Escherichia coli ECOR27 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD no data 31 54
  Escherichia coli ECRC101 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD no data 31 54
  Escherichia coli ECRC101 MCAODC_10090 xerD site-specific tyrosine recombinase XerD no data 31 54
  Escherichia coli ECRC62 BNILDI_10025 xerD site-specific tyrosine recombinase XerD insig. 31 54
  Escherichia coli ECRC98 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD no data 31 54
  Escherichia coli ECRC99 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD no data 31 54
  Escherichia coli Nissle 1917 ECOLIN_RS16125 site-specific tyrosine recombinase XerD cofit 31 54
  Escherichia coli BW25113 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) strong 31 54
  Marinobacter adhaerens HP15 HP15_250 site-specific tyrosine recombinase XerC strong 27 85
  Shewanella oneidensis MR-1 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) strong 27 76
  Azospirillum sp. SherDot2 MPMX19_02643 Tyrosine recombinase XerD no data 27 70
  Dickeya dianthicola 67-19 HGI48_RS20045 tyrosine recombinase XerC strong 25 89
  Dickeya dianthicola ME23 DZA65_RS21090 tyrosine recombinase XerC insig. 25 89
  Phocaeicola dorei CL03T12C01 ABI39_RS16135 site-specific integrase insig. 25 92
  Escherichia coli ECOR38 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD cofit 31 47
  Ralstonia solanacearum PSI07 RPSI07_RS23690 tyrosine recombinase XerC insig. 27 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1244 Site-specific recombinase XerD no data 25 94
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1749 Site-specific recombinase XerD no data 25 94
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1789 Site-specific recombinase XerD no data 25 94
  Klebsiella michiganensis M5al BWI76_RS23815 site-specific tyrosine recombinase XerD no data 31 54
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19225 site-specific tyrosine recombinase XerD strong 31 49
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09520 site-specific tyrosine recombinase XerD sig. 30 51