Conservation of cofitness between Xcc-8004.3681.1 and Xcc-8004.5193.1 in Xanthomonas campestris pv. campestris strain 8004

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE 1.0 Xcc-8004.5193.1 Outer membrane protein assembly factor YaeT precursor 0.43 7
Lysobacter sp. OAE881 0.79 ABIE51_RS13890 RNA polymerase sigma factor RpoE 0.47 ABIE51_RS01235 autotransporter assembly complex family protein low > 62
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS07180 RNA polymerase sigma factor RpoE 0.23 ABZR86_RS19705 autotransporter assembly complex family protein low > 74
Rhodanobacter denitrificans MT42 0.66 LRK55_RS16655 RNA polymerase sigma factor RpoE 0.23 LRK55_RS12405 autotransporter assembly complex family protein — —
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS16940 RNA polymerase sigma factor RpoE 0.23 LRK54_RS12665 autotransporter assembly complex protein TamA low > 59
Pseudomonas stutzeri RCH2 0.60 Psest_3100 RNA polymerase sigma factor RpoE 0.18 Psest_2132 Outer membrane protein low > 67
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_04575 RNA polymerase subunit sigma 0.17 AO356_01050 hypothetical protein low > 104
Pseudomonas sp. RS175 0.59 PFR28_00690 RNA polymerase sigma-H factor 0.18 PFR28_02752 Translocation and assembly module subunit TamA low > 88
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT 0.17 Pf1N1B4_3997 Uncharacterized protein YtfM precursor — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS07230 RNA polymerase sigma factor RpoE 0.17 PFLU_RS18920 outer membrane protein assembly factor low > 109
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT 0.18 PfGW456L13_2601 Uncharacterized protein YtfM precursor low > 87
Pseudomonas simiae WCS417 0.59 PS417_07120 RNA polymerase sigma-H factor 0.17 PS417_16970 membrane protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS07230 RNA polymerase sigma factor RpoE 0.17 PFLU_RS18920 outer membrane protein assembly factor low > 109
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT 0.18 Pf6N2E2_144 Uncharacterized protein YtfM precursor low > 103
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_17625 RNA polymerase subunit sigma 0.17 AO353_27865 hypothetical protein low > 101
Pseudomonas putida KT2440 0.59 PP_1427 RNA polymerase sigma E factor 0.16 PP_2892 conserved exported protein of unknown function low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.17 Psyr_2478 surface antigen (D15):Surface antigen variable number low > 86
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.17 Psyr_2478 surface antigen (D15):Surface antigen variable number low > 86
Alteromonas macleodii MIT1002 0.57 MIT1002_02719 Sigma-24 0.16 MIT1002_04048 Autotransporter assembly factor TamA — —
Pantoea sp. MT58 0.56 IAI47_04850 RNA polymerase sigma factor RpoE 0.18 IAI47_02715 outer membrane protein assembly factor — —
Erwinia tracheiphila SCR3 0.56 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE 0.17 LU632_RS02105 autotransporter assembly complex protein TamA low > 74
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS04575 RNA polymerase sigma factor RpoE 0.10 QEN71_RS25050 autotransporter assembly complex family protein low > 153
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS14405 RNA polymerase sigma factor RpoE 0.11 BPHYT_RS04945 membrane protein — —
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE 0.10 H281DRAFT_00153 autotransporter secretion outer membrane protein TamA — —
Enterobacter sp. TBS_079 0.56 MPMX20_03444 ECF RNA polymerase sigma-E factor 0.18 MPMX20_00503 Translocation and assembly module subunit TamA — —
Serratia liquefaciens MT49 0.56 IAI46_19585 RNA polymerase sigma factor RpoE 0.20 IAI46_01770 outer membrane protein assembly factor — —
Enterobacter asburiae PDN3 0.56 EX28DRAFT_0072 RNA polymerase sigma factor RpoE 0.18 EX28DRAFT_3406 Outer membrane protein — —
Paraburkholderia graminis OAS925 0.56 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) 0.10 ABIE53_001263 translocation and assembly module TamA low > 113
Shewanella sp. ANA-3 0.56 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) 0.15 Shewana3_1894 surface antigen (D15) (RefSeq) — —
Escherichia coli ECOR38 0.55 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE 0.18 HEPCGN_10200 tamA autotransporter assembly complex protein TamA — —
Escherichia coli ECOR27 0.55 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE 0.18 NOLOHH_04260 tamA autotransporter assembly complex protein TamA — —
Escherichia coli BW25113 0.55 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) 0.18 b4220 ytfM predicted outer membrane protein and surface antigen (NCBI) — —
Escherichia coli ECRC99 0.55 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE 0.18 KEDOAH_16155 tamA autotransporter assembly complex protein TamA — —
Escherichia coli ECRC62 0.55 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE 0.18 BNILDI_07255 tamA autotransporter assembly complex protein TamA — —
Escherichia coli ECRC101 0.55 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE 0.18 MCAODC_02515 tamA autotransporter assembly complex protein TamA — —
Shewanella loihica PV-4 0.55 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) 0.17 Shew_2172 surface antigen (D15) (RefSeq) — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS14560 RNA polymerase sigma factor RpoE 0.18 ECOLIN_RS24510 autotransporter assembly complex protein TamA — —
Pectobacterium carotovorum WPP14 0.55 HER17_RS05780 RNA polymerase sigma factor RpoE 0.19 HER17_RS03980 autotransporter assembly complex protein TamA — —
Escherichia fergusonii Becca 0.55 EFB2_01323 ECF RNA polymerase sigma-E factor 0.18 EFB2_04309 Translocation and assembly module subunit TamA — —
Escherichia coli ECRC100 0.55 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE 0.18 OKFHMN_12000 tamA autotransporter assembly complex protein TamA — —
Klebsiella michiganensis M5al 0.55 BWI76_RS21355 RNA polymerase sigma factor RpoE 0.19 BWI76_RS02775 outer membrane protein assembly factor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01134 ECF RNA polymerase sigma-E factor 0.18 OHPLBJKB_03813 Translocation and assembly module subunit TamA — —
Escherichia coli BL21 0.55 ECD_02467 RNA polymerase sigma E factor 0.18 ECD_04091 translocation and assembly module for autotransporter export, outer membrane subunit — —
Escherichia coli ECRC102 0.55 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE 0.18 NIAGMN_09850 tamA autotransporter assembly complex protein TamA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF2107 RNA polymerase sigma factor RpoE 0.18 GFF874 Uncharacterized protein YtfM precursor — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS09625 RNA polymerase sigma factor RpoE 0.11 HSERO_RS07725 membrane protein — —
Shewanella oneidensis MR-1 0.55 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) 0.15 SO2114 conserved hypothetical protein (NCBI ptt file) — —
Escherichia coli ECRC98 0.55 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE 0.18 JDDGAC_15640 tamA autotransporter assembly complex protein TamA — —
Rahnella sp. WP5 0.55 EX31_RS21800 RNA polymerase sigma factor RpoE 0.19 EX31_RS08695 outer membrane protein assembly factor — —
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_12485 RNA polymerase sigma factor RpoE 0.18 CSW01_12905 outer membrane protein assembly factor — —
Dickeya dadantii 3937 0.55 DDA3937_RS15765 RNA polymerase sigma factor RpoE 0.18 DDA3937_RS17160 outer membrane protein assembly factor low > 74
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS14445 RNA polymerase sigma factor RpoE 0.10 RALBFv3_RS04420 outer membrane protein assembly factor 0.61 52
Dickeya dianthicola 67-19 0.55 HGI48_RS15850 RNA polymerase sigma factor RpoE 0.17 HGI48_RS17215 outer membrane protein assembly factor low > 71
Ralstonia solanacearum UW163 0.55 UW163_RS11910 RNA polymerase sigma factor RpoE 0.10 UW163_RS09250 outer membrane protein assembly factor — —
Ralstonia solanacearum GMI1000 0.55 RS_RS05225 RNA polymerase sigma factor RpoE 0.11 RS_RS11970 outer membrane protein assembly factor low > 80
Ralstonia solanacearum PSI07 0.55 RPSI07_RS19015 RNA polymerase sigma factor RpoE 0.11 RPSI07_RS12950 outer membrane protein assembly factor low > 81
Dickeya dianthicola ME23 0.55 DZA65_RS16930 RNA polymerase sigma factor RpoE 0.17 DZA65_RS18295 outer membrane protein assembly factor low > 75
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS14080 RNA polymerase sigma factor RpoE 0.12 RR42_RS16040 membrane protein low > 128
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS10165 RNA polymerase sigma factor RpoE 0.11 ABZR87_RS00015 autotransporter assembly complex family protein low > 80
Shewanella amazonensis SB2B 0.51 Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) 0.15 Sama_1616 hypothetical protein (RefSeq) 0.39 50
Acidovorax sp. GW101-3H11 0.50 Ac3H11_1573 RNA polymerase sigma factor RpoE 0.08 Ac3H11_3933 Surface antigen (D15) precursor — —
Variovorax sp. OAS795 0.49 ABID97_RS08330 RNA polymerase sigma factor RpoE 0.08 ABID97_RS24415 BamA/TamA family outer membrane protein low > 91
Variovorax sp. SCN45 0.49 GFF3863 RNA polymerase sigma factor RpoE 0.09 GFF2183 Outer membrane component of TAM transport system 0.41 50
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF3339 RNA polymerase sigma factor RpoE 0.08 GFF671 Surface antigen (D15) precursor low > 90
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02837 RNA polymerase ECF-type sigma factor 0.07 CCNA_01675 outer membrane protein low > 67
Caulobacter crescentus NA1000 0.21 CCNA_02837 RNA polymerase ECF-type sigma factor 0.07 CCNA_01675 outer membrane protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.19 A4249_RS10790 RNA polymerase sigma factor 0.07 A4249_RS02875 autotransporter assembly complex family protein low > 48

Not shown: 19 genomes with orthologs for Xcc-8004.3681.1 only; 1 genomes with orthologs for Xcc-8004.5193.1 only