| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | 1.0 | Xcc-8004.3040.1 | | Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) | 0.66 | 17 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS00325 | | response regulator transcription factor | 0.18 | QEN71_RS00320 | | ATP-binding protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS10115 | | response regulator transcription factor | 0.25 | ABZR86_RS10110 | | ATP-binding protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_10900 | | two-component system response regulator | 0.20 | OKGIIK_10895 | | Histidine kinase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS04040 | | response regulator transcription factor | 0.22 | LRK54_RS04035 | | ATP-binding protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS03810 | | response regulator transcription factor | 0.22 | LRK55_RS03805 | | histidine kinase dimerization/phospho-acceptor domain-containing protein | low | > 63 |
| Burkholderia phytofirmans PsJN | 0.45 | BPHYT_RS01625 | | chemotaxis protein CheY | 0.18 | BPHYT_RS01620 | | sensor histidine kinase | 0.36 | 30 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_000420 | | two-component system response regulator RegA | 0.18 | ABIE53_000419 | | two-component system sensor histidine kinase RegB | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | 0.18 | H281DRAFT_02209 | | two-component system, sensor histidine kinase RegB | — | — |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS13000 | | chemotaxis protein CheY | 0.18 | HSERO_RS12295 | | histidine kinase | low | > 78 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_5048 | | Dna binding response regulator PrrA (RegA) | 0.15 | PfGW456L13_5049 | | Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) | 0.56 | 1 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.15 | Psyr_4231 | | ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | 0.53 | 2 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_4230 | | Helix-turn-helix, Fis-type | 0.15 | Psyr_4231 | | ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | 0.69 | 1 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_05335 | | chemotaxis protein CheY | 0.16 | AO353_05340 | | histidine kinase | — | — |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS03965 | | DNA-binding response regulator | 0.21 | UW163_RS03970 | | sensor histidine kinase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.21 | RALBFv3_RS09610 | | sensor histidine kinase | 0.75 | 1 |
| Pseudomonas putida KT2440 | 0.41 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.15 | PP_0887 | | Sensor histidine kinase | 0.27 | 24 |
| Dechlorosoma suillum PS | 0.41 | Dsui_1180 | | response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein | 0.19 | Dsui_1181 | | signal transduction histidine kinase | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS05135 | | response regulator transcription factor | 0.20 | ABZR87_RS05140 | | ATP-binding protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | 0.14 | Pf1N1B4_1116 | | Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) | 0.97 | 1 |
| Shewanella oneidensis MR-1 | 0.41 | SO4172 | | DNA-binding response regulator (NCBI ptt file) | 0.13 | SO4173 | | sensor histidine kinase (NCBI ptt file) | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS00200 | | DNA-binding response regulator | 0.18 | RS_RS00195 | | sensor histidine kinase | 0.64 | 1 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3707 | | response regulator receiver protein (RefSeq) | 0.12 | Shewana3_3708 | | ATPase domain-containing protein (RefSeq) | 0.79 | 1 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS23750 | | DNA-binding response regulator | 0.20 | RPSI07_RS23755 | | sensor histidine kinase | 0.79 | 1 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.12 | PFR28_00136 | | Sensor histidine kinase RegB | — | — |
| Pseudomonas sp. S08-1 | 0.41 | OH686_08680 | | Dna binding response regulator PrrA (RegA) | 0.14 | OH686_08685 | | Sensor histidine kinase PrrB (RegB) | low | > 80 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_04100 | | chemotaxis protein CheY | 0.15 | PS417_04095 | | histidine kinase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.15 | PFLU_RS04135 | | HAMP domain-containing histidine kinase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.15 | PFLU_RS04135 | | HAMP domain-containing histidine kinase | 0.39 | 21 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.14 | Pf6N2E2_3303 | | Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_07205 | | chemotaxis protein CheY | 0.14 | AO356_07210 | | histidine kinase | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3338 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.16 | Psest_3339 | | Signal transduction histidine kinase | 0.61 | 1 |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_1932 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.15 | B158DRAFT_1931 | | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.99 | 1 |
| Shewanella amazonensis SB2B | 0.39 | Sama_3186 | | response regulator receiver protein (RefSeq) | 0.13 | Sama_3187 | | sensor histidine kinase (RefSeq) | 0.74 | 1 |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | 0.13 | Dshi_3432 | | integral membrane sensor signal transduction histidine kinase (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.37 | PGA1_c35390 | | photosynthetic apparatus regulatory protein RegA | 0.11 | PGA1_c35370 | | sensor histidine kinase RegB | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_01845 | | two-component response regulator protein | 0.12 | CCNA_01846 | | two-component sensor histidine kinase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_01845 | | two-component response regulator protein | 0.12 | CCNA_01846 | | two-component sensor histidine kinase | 0.70 | 1 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.37 | A4249_RS04475 | | response regulator transcription factor | 0.18 | A4249_RS04470 | | ATP-binding protein | low | > 48 |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS01085 | | chemotaxis protein CheY | 0.19 | RR42_RS01090 | | histidine kinase | 0.57 | 1 |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS19505 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.12 | ABIE40_RS19510 | | ActS/PrrB/RegB family redox-sensitive histidine kinase | 0.90 | 1 |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_06181 | | Photosynthetic apparatus regulatory protein RegA | 0.17 | MPMX19_06180 | | Sensor histidine kinase RegB | — | — |
| Sinorhizobium meliloti 1021 | 0.36 | SMc02584 | | transcriptional regulator | 0.13 | SMc02585 | | sensor histidine kinase transmembrane protein | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS23150 | | chemotaxis protein CheY | 0.17 | AZOBR_RS23155 | | histidine kinase | 0.44 | 9 |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_1560 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.16 | Ga0059261_1561 | | Signal transduction histidine kinase | 0.76 | 4 |
| Agrobacterium fabrum C58 | 0.35 | Atu0050 | | two component response regulator | 0.09 | Atu0051 | | two component sensor kinase | 0.91 | 1 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS09795 | | response regulator transcription factor | 0.19 | ABIE51_RS09790 | | ATP-binding protein | — | — |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3147 | | Dna binding response regulator PrrA (RegA) | 0.15 | Ac3H11_3146 | | Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) | — | — |
| Variovorax sp. SCN45 | 0.34 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.16 | GFF5673 | | Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) | 0.77 | 22 |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS03875 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.13 | ABIE41_RS21045 | | ATP-binding protein | low | > 77 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS07610 | | response regulator transcription factor | 0.16 | ABID97_RS07615 | | ATP-binding protein | 0.74 | 1 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.11 | TX73_002965 | | ActS/PrrB/RegB family redox-sensitive histidine kinase | 0.73 | 1 |
Not shown: 2 genomes with orthologs for Xcc-8004.3041.1 only; 0 genomes with orthologs for Xcc-8004.3040.1 only