Conservation of cofitness between Xcc-8004.3118.1 and Xcc-8004.2348.1 in Xanthomonas campestris pv. campestris strain 8004

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3118.1 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 1.0 Xcc-8004.2348.1 hypothetical protein 0.69 1
Lysobacter sp. OAE881 0.79 ABIE51_RS07790 CinA family protein 0.79 ABIE51_RS08735 pyridoxal phosphate-dependent aminotransferase low > 62
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS00655 CinA family protein 0.65 ABZR86_RS02120 pyridoxal phosphate-dependent aminotransferase low > 74
Rhodanobacter denitrificans MT42 0.67 LRK55_RS14690 CinA family protein 0.65 LRK55_RS00605 pyridoxal phosphate-dependent aminotransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS14975 CinA family protein 0.65 LRK54_RS00830 pyridoxal phosphate-dependent aminotransferase low > 59
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_03735 pncC damage-inducible protein CinA 0.66 OKGIIK_06390 aspB methionine aminotransferase low > 52
Dickeya dadantii 3937 0.54 DDA3937_RS16250 nicotinamide-nucleotide amidase 0.50 DDA3937_RS16625 pyridoxal phosphate-dependent aminotransferase low > 74
Dickeya dianthicola 67-19 0.54 HGI48_RS16360 nicotinamide-nucleotide amidase 0.51 HGI48_RS16695 pyridoxal phosphate-dependent aminotransferase low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS17455 nicotinamide-nucleotide amidase 0.50 DZA65_RS17785 pyridoxal phosphate-dependent aminotransferase low > 75
Escherichia coli ECOR27 0.52 NOLOHH_12540 pncC nicotinamide-nucleotide amidase 0.52 NOLOHH_23910 ybdL methionine-oxo-acid transaminase low > 75
Escherichia coli BL21 0.52 ECD_02550 nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase 0.52 ECD_00568 methionine aminotransferase, PLP-dependent low > 61
Escherichia coli BW25113 0.52 b2700 ygaD competence damage-inducible protein A (NCBI) 0.52 b0600 ybdL putative aminotransferase (NCBI) low > 76
Escherichia coli ECRC62 0.52 BNILDI_11100 pncC nicotinamide-nucleotide amidase 0.52 BNILDI_21920 ybdL methionine-oxo-acid transaminase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01034 Nicotinamide-nucleotide amidohydrolase PncC 0.52 OHPLBJKB_03105 Methionine aminotransferase low > 73
Escherichia coli Nissle 1917 0.52 ECOLIN_RS15065 nicotinamide-nucleotide amidase 0.52 ECOLIN_RS03295 methionine-oxo-acid transaminase low > 55
Enterobacter sp. TBS_079 0.52 MPMX20_03581 Nicotinamide-nucleotide amidohydrolase PncC 0.51 MPMX20_01269 Methionine aminotransferase low > 85
Escherichia fergusonii Becca 0.52 EFB2_01224 Nicotinamide-nucleotide amidohydrolase PncC 0.52 EFB2_03491 Methionine aminotransferase low > 86
Escherichia coli ECRC102 0.52 NIAGMN_18470 pncC nicotinamide-nucleotide amidase 0.52 NIAGMN_05590 ybdL methionine-oxo-acid transaminase — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2786 amidohydrolase, PncC family 0.52 EX28DRAFT_2353 Aspartate/tyrosine/aromatic aminotransferase low > 76
Escherichia coli ECRC98 0.52 JDDGAC_24365 pncC nicotinamide-nucleotide amidase 0.52 JDDGAC_11180 ybdL methionine-oxo-acid transaminase low > 86
Escherichia coli ECRC100 0.52 OKFHMN_20700 pncC nicotinamide-nucleotide amidase 0.52 OKFHMN_07535 ybdL methionine-oxo-acid transaminase low > 80
Escherichia coli ECRC99 0.52 KEDOAH_07435 pncC nicotinamide-nucleotide amidase 0.52 KEDOAH_20435 ybdL methionine-oxo-acid transaminase — —
Escherichia coli ECRC101 0.52 MCAODC_11225 pncC nicotinamide-nucleotide amidase 0.52 MCAODC_26750 ybdL methionine-oxo-acid transaminase low > 87
Escherichia coli ECOR38 0.52 HEPCGN_19895 pncC nicotinamide-nucleotide amidase 0.52 HEPCGN_00745 ybdL methionine-oxo-acid transaminase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF4694 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.50 GFF4508 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Klebsiella michiganensis M5al 0.49 BWI76_RS22185 hypothetical protein 0.52 BWI76_RS07920 methionine aminotransferase low > 92
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS27055 CinA family protein 0.55 QEN71_RS24010 pyridoxal phosphate-dependent aminotransferase low > 153
Serratia liquefaciens MT49 0.47 IAI46_03835 nicotinamide-nucleotide amidase 0.54 IAI46_04300 pyridoxal phosphate-dependent aminotransferase low > 86
Pectobacterium carotovorum WPP14 0.46 HER17_RS05040 nicotinamide-nucleotide amidase 0.52 HER17_RS04575 pyridoxal phosphate-dependent aminotransferase low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_1377 CinA, C-terminal 0.59 Psyr_1253 2-keto-4-methylthiobutyrate aminotransferase apoenzyme low > 86
Pseudomonas stutzeri RCH2 0.46 Psest_2873 competence/damage-inducible protein CinA C-terminal domain 0.54 Psest_1268 Aspartate/tyrosine/aromatic aminotransferase low > 67
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_1377 CinA, C-terminal 0.59 Psyr_1253 2-keto-4-methylthiobutyrate aminotransferase apoenzyme low > 86
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16895 competence damage-inducible protein A 0.56 BPHYT_RS06770 aminotransferase low > 109
Pantoea sp. MT58 0.45 IAI47_04295 nicotinamide-nucleotide amidase 0.51 IAI47_15225 pyridoxal phosphate-dependent aminotransferase low > 76
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_06305 nicotinamide-nucleotide amidase 0.56 H281DRAFT_04597 2-keto-4-methylthiobutyrate aminotransferase apoenzyme low > 103
Pseudomonas sp. S08-1 0.44 OH686_18200 Nicotinamide-nucleotide amidase 0.57 OH686_17555 Methionine aminotransferase, PLP-dependent or Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase low > 80
Paraburkholderia graminis OAS925 0.44 ABIE53_003546 nicotinamide-nucleotide amidase 0.56 ABIE53_001620 methionine aminotransferase low > 113
Desulfovibrio vulgaris Hildenborough JW710 0.44 DVU1033 cinA competence/damage-inducible protein CinA protein, truncation (TIGR) 0.25 DVU0392 aromatic aminotransferase (TIGR) low > 55
Pseudomonas fluorescens SBW25 0.44 PFLU_RS05880 CinA family protein 0.58 PFLU_RS24775 pyridoxal phosphate-dependent aminotransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS05880 CinA family protein 0.58 PFLU_RS24775 pyridoxal phosphate-dependent aminotransferase low > 109
Pseudomonas simiae WCS417 0.44 PS417_05810 damage-inducible protein CinA 0.59 PS417_23120 aminotransferase low > 88
Dechlorosoma suillum PS 0.43 Dsui_0710 competence/damage-inducible protein CinA-like protein 0.52 Dsui_3376 aspartate/tyrosine/aromatic aminotransferase low > 51
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_16800 damage-inducible protein CinA 0.57 AO353_15915 aminotransferase low > 101
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS01580 CinA family protein 0.55 ABZR87_RS14645 pyridoxal phosphate-dependent aminotransferase low > 80
Rahnella sp. WP5 0.43 EX31_RS07805 nicotinamide-nucleotide amidase 0.53 EX31_RS21065 pyridoxal phosphate-dependent aminotransferase low > 89
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF3091 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.57 GFF4304 Aspartate aminotransferase (EC 2.6.1.1) low > 90
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS05915 CinA family protein 0.56 RALBFv3_RS02730 pyridoxal phosphate-dependent aminotransferase low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS07710 CinA family protein 0.56 UW163_RS10995 pyridoxal phosphate-dependent aminotransferase — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS17625 damage-inducible protein CinA 0.55 RR42_RS05770 aminotransferase low > 128
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS16840 competence damage-inducible protein A 0.56 HSERO_RS15115 aminotransferase low > 78
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_4669 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.59 PfGW456L13_4856 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_3142 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.58 Pf1N1B4_849 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Ralstonia solanacearum PSI07 0.42 RPSI07_RS11330 CinA family protein 0.56 RPSI07_RS14585 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum GMI1000 0.42 RS_RS13860 CinA family protein 0.56 RS_RS10105 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_05675 damage-inducible protein CinA 0.56 AO356_06565 aminotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_2994 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.56 Pf6N2E2_3173 Aspartate aminotransferase (EC 2.6.1.1) low > 103
Azospirillum brasilense Sp245 0.41 AZOBR_RS14405 competence damage-inducible protein A 0.35 AZOBR_RS20195 aminotransferase low > 97
Pseudomonas putida KT2440 0.41 PP_1628 NMN amidohydrolase 0.57 PP_0858 putative methionine/glutamine aminotransferase low > 96
Pseudomonas sp. RS175 0.41 PFR28_00471 Nicotinamide-nucleotide amidohydrolase PncC 0.58 PFR28_00302 Methionine aminotransferase low > 88
Azospirillum sp. SherDot2 0.40 MPMX19_01107 Nicotinamide-nucleotide amidohydrolase PncC 0.37 MPMX19_04906 Methionine aminotransferase low > 112
Magnetospirillum magneticum AMB-1 0.40 AMB_RS12830 CinA family protein 0.36 AMB_RS03565 pyridoxal phosphate-dependent aminotransferase — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_738 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.57 Ac3H11_2404 Aspartate aminotransferase (EC 2.6.1.1) low > 79
Sinorhizobium meliloti 1021 0.39 SMc01039 hypothetical protein 0.21 SMc04386 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data) low > 103
Rhizobium sp. OAE497 0.37 ABIE40_RS09070 CinA family protein 0.21 ABIE40_RS21035 pyridoxal phosphate-dependent aminotransferase low > 107
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_1530 competence/damage-inducible protein CinA C-terminal domain 0.18 B158DRAFT_2340 Aspartate/tyrosine/aromatic aminotransferase low > 40
Variovorax sp. SCN45 0.37 GFF6273 Nicotinamide-nucleotide amidase (EC 3.5.1.42) 0.54 GFF245 Aspartate aminotransferase (EC 2.6.1.1) low > 127
Castellaniella sp019104865 MT123 0.33 ABCV34_RS10110 CinA family protein 0.45 ABCV34_RS11735 methionine aminotransferase low > 48
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01811 competence/damage-inducible protein CinA 0.32 CCNA_00775 aspartate aminotransferase low > 67
Caulobacter crescentus NA1000 0.33 CCNA_01811 competence/damage-inducible protein CinA 0.32 CCNA_00775 aspartate aminotransferase low > 66
Bosea sp. OAE506 0.26 ABIE41_RS16805 CinA family protein 0.38 ABIE41_RS03840 aminotransferase low > 77

Not shown: 11 genomes with orthologs for Xcc-8004.3118.1 only; 16 genomes with orthologs for Xcc-8004.2348.1 only