| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.3041.1 | | Dna binding response regulator PrrA (RegA) | 1.0 | Xcc-8004.2228.1 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | 0.63 | 20 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS00325 | | response regulator transcription factor | 0.37 | QEN71_RS32270 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS10115 | | response regulator transcription factor | 0.57 | ABZR86_RS09880 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_10900 | | two-component system response regulator | 0.57 | OKGIIK_03005 | petA | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS04040 | | response regulator transcription factor | 0.58 | LRK54_RS13765 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS03810 | | response regulator transcription factor | 0.58 | LRK55_RS13480 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_000420 | | two-component system response regulator RegA | 0.36 | ABIE53_003685 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_02208 | | two component transcriptional regulator, Fis family | 0.37 | H281DRAFT_05669 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Burkholderia phytofirmans PsJN | 0.45 | BPHYT_RS01625 | | chemotaxis protein CheY | 0.35 | BPHYT_RS17630 | | ubiquinol-cytochrome C reductase | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS13000 | | chemotaxis protein CheY | 0.40 | HSERO_RS20245 | | ubiquinol-cytochrome C reductase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_05335 | | chemotaxis protein CheY | 0.48 | AO353_15245 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS09615 | | DNA-binding response regulator | 0.35 | RALBFv3_RS06730 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS03965 | | DNA-binding response regulator | 0.35 | UW163_RS06885 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Pseudomonas putida KT2440 | 0.41 | PP_0888 | | Photosynthetic apparatus regulatory protein RegA | 0.48 | PP_1317 | | Ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 96 |
| Shewanella oneidensis MR-1 | 0.41 | SO4172 | | DNA-binding response regulator (NCBI ptt file) | 0.48 | SO0608 | petA | ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI ptt file) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_1115 | | Dna binding response regulator PrrA (RegA) | 0.48 | Pf1N1B4_962 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | low | > 87 |
| Dechlorosoma suillum PS | 0.41 | Dsui_1180 | | response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein | 0.42 | Dsui_1812 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS05135 | | response regulator transcription factor | 0.35 | ABZR87_RS02385 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS00200 | | DNA-binding response regulator | 0.35 | RS_RS14675 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 80 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_00137 | | Photosynthetic apparatus regulatory protein RegA | 0.48 | PFR28_03606 | | Ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Pseudomonas sp. S08-1 | 0.41 | OH686_08680 | | Dna binding response regulator PrrA (RegA) | 0.48 | OH686_08390 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_3302 | | Dna binding response regulator PrrA (RegA) | 0.47 | Pf6N2E2_5337 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.49 | PFLU_RS04195 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 109 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3707 | | response regulator receiver protein (RefSeq) | 0.49 | Shewana3_0601 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_07205 | | chemotaxis protein CheY | 0.47 | AO356_17065 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS04140 | | response regulator transcription factor | 0.49 | PFLU_RS04195 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS23750 | | DNA-binding response regulator | 0.34 | RPSI07_RS10505 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_04100 | | chemotaxis protein CheY | 0.47 | PS417_04155 | | ubiquinol-cytochrome C reductase | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3338 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.46 | Psest_3279 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | — | — |
| Shewanella loihica PV-4 | 0.41 | Shew_3342 | | two component Fis family transcriptional regulator (RefSeq) | 0.49 | Shew_0570 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_1932 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.44 | B158DRAFT_2100 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | — | — |
| Shewanella amazonensis SB2B | 0.39 | Sama_3186 | | response regulator receiver protein (RefSeq) | 0.47 | Sama_3021 | | ubiquinol--cytochrome-c reductase (RefSeq) | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_3430 | | two component transcriptional regulator, Fis family (RefSeq) | 0.20 | Dshi_3278 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) | — | — |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_01845 | | two-component response regulator protein | 0.23 | CCNA_00505 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_01845 | | two-component response regulator protein | 0.23 | CCNA_00505 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.37 | PGA1_c35390 | | photosynthetic apparatus regulatory protein RegA | 0.17 | PGA1_c34000 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.37 | A4249_RS04475 | | response regulator transcription factor | 0.23 | A4249_RS02560 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 48 |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS01085 | | chemotaxis protein CheY | 0.39 | RR42_RS18825 | | ubiquinol-cytochrome C reductase | 0.26 | 49 |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS19505 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.25 | ABIE40_RS13130 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 107 |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_06181 | | Photosynthetic apparatus regulatory protein RegA | 0.26 | MPMX19_05012 | | Ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Sinorhizobium meliloti 1021 | 0.36 | SMc02584 | | transcriptional regulator | 0.23 | SMc00187 | | ubiquinol-cytochrome C reductase iron-sulfur subunit protein | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS23150 | | chemotaxis protein CheY | 0.27 | AZOBR_RS20745 | | ubiquinol-cytochrome C reductase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_1560 | | Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | 0.25 | Ga0059261_3219 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | low | > 68 |
| Agrobacterium fabrum C58 | 0.35 | Atu0050 | | two component response regulator | 0.23 | Atu2239 | | ubiquinol-cytochrome C reductase iron-sulfur subunit | low | > 89 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS09795 | | response regulator transcription factor | 0.82 | ABIE51_RS15440 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Marinobacter adhaerens HP15 | 0.34 | HP15_3981 | | two component transcriptional regulator, Fis family | 0.47 | HP15_545 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Variovorax sp. SCN45 | 0.34 | GFF5672 | | Dna binding response regulator PrrA (RegA) | 0.42 | GFF6694 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | low | > 127 |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS03875 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.28 | ABIE41_RS11190 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.47 | 12 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002960 | | ActR/PrrA/RegA family redox response regulator transcription factor | 0.26 | TX73_006120 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | — | — |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS07610 | | response regulator transcription factor | 0.41 | ABID97_RS22985 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | low | > 91 |
Not shown: 4 genomes with orthologs for Xcc-8004.3041.1 only; 6 genomes with orthologs for Xcc-8004.2228.1 only